cluster # 4326

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Schistosoma mansoni
cluster # 4326 cluster # 4326 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4326#0 length = 581 sequences # 2

consensus_4326#1 length = 557 sequences # 1

consensusID : consensus_4326#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 581
fasta sequence

                              [TTTCTTGGGCACTTAACTATGACTGATTTTGCAGCCTCCCATAAAACTGATCTTTATCGTCGTCGTTGTTATCATTCGTGGGTACATAACATTGGATAACATTCATTGTGACACCCTCCTTTTTTGTTTTGAACGATGCTTTGATAGTTCTGGATCCATGAGATTTCCATCCTACAAGTGCATTTCGTGTTTCTCTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGAGCATTTTCCTCTTCGTGACCAGAGTACAACAGCATCTCTCGCGTATCTGGCCTTTGCTGTCCACCTTGAGTCCAATGGGTTTCGCTGATTCCAAGTATGCCAATTTGTATCTCCTCATTTCCGTTGCTATTCGATAGGTCTTCCCGGTCTCCCACATTGTGTGGACGTTCCATATACCTATAAAAAATGTTGCTCTGGTTGTTAGAAGGAGCATCGGCCTCGTGACTTCCGAAGAATCTCGGCTTTCATCGTGAGGCGTCATAATTCTTCCTTCAACTTGGAGGGCAGAGTTAAAATTATTTCTTCTGGTTAGCGTTTTTTAGCGAGTTAGTTTTTCTACGGGATGGGGTC]

[+] EMBL CD179425             [TTTCTTGGGCACTTAACTATGACTGATTTTGCAGCCTCCCATAAAACTGATCTTTATCGTCGTCGTTGTTATCATTCGTGGGTACATAACATTGGATAACATTCATTGTGACACCCTCCTTTTTTGTTTTGAACGATGCTTTGATAGTTCTGGATCCATGAGATTTCCATCCTACAAGTGCATTTCGTGTTTCTCTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGAGCATTTTCCTCTTCGTGACCAGAGTACAACAGCATCTCTCGCGTATCTGGCCTTTGCTGTCCACCTTGAGTCCAATGGGTTTCGCTGATTCCAAGTATGCCAATTTGTATCTCCTCATTTCCGTTGCTA                                                                                                                                                                                                                              ]
[-] EMBL CD131245             [                                                                                                                                       ATGCTTTGATAGTTCTGGATCCATGAGATTTCCATCCTACAAGTGCATTTCGTGTTTCTCTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGAGCATTTTCCTCTTCGTGACCAGAGTACAACAGCATCTCTCGCGTATCTGGCCTTTGCTGTCCACCTTGAGTCCAATGGGTTTCGCTGATTCCAAGTATGCCAATTTGTATCTCCTCATTTCCGTTGCCATTCGATAGGTCTTCCCGGTCTCCCACATTGTGTGGACGTTCCATATACCTATAAAAAATGTTGCTCTGGTTGTTAGAAGGAGCATCGGCCTCGTGACTTCCGAAGAATCTCGGCTTTCATCGTGAGGCGTCATAATTCTTCCTTCAACTTGGAGGGCAGAGTTAAAATTATTTCTTCTGGTTAGCGTTTTTTAGCGAGTTAGTTTTTCTACGGGATGGGGTC]




>consensus_4326#0
TTTCTTGGGCACTTAACTATGACTGATTTTGCAGCCTCCCATAAAACTGATCTTTATCGT
CGTCGTTGTTATCATTCGTGGGTACATAACATTGGATAACATTCATTGTGACACCCTCCT
TTTTTGTTTTGAACGATGCTTTGATAGTTCTGGATCCATGAGATTTCCATCCTACAAGTG
CATTTCGTGTTTCTCTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGAGCATTTTCCT
CTTCGTGACCAGAGTACAACAGCATCTCTCGCGTATCTGGCCTTTGCTGTCCACCTTGAG
TCCAATGGGTTTCGCTGATTCCAAGTATGCCAATTTGTATCTCCTCATTTCCGTTGCTAT
TCGATAGGTCTTCCCGGTCTCCCACATTGTGTGGACGTTCCATATACCTATAAAAAATGT
TGCTCTGGTTGTTAGAAGGAGCATCGGCCTCGTGACTTCCGAAGAATCTCGGCTTTCATC
GTGAGGCGTCATAATTCTTCCTTCAACTTGGAGGGCAGAGTTAAAATTATTTCTTCTGGT
TAGCGTTTTTTAGCGAGTTAGTTTTTCTACGGGATGGGGTC

consensusID : consensus_4326#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [TGTAATCCCTTGCTTCTTTGTTCTGAAAGATGCTTTGATTATCCTGGGTCCATGAGATTCCCATCCTACAAGTGCATTTCGTGCTTCTTTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGGGCATTTTCCCCTTCGTGACCGGAGTACAGCAGCATCTCTCCTGTGTCTAGCCTTTGTTGTCCAGTTTGTGTCAATGGGTTTCGCTGATCCAGAGTACTGAAAGTTGTTACATGCTCTTTGATGTGTGGGTGAGAATGATAATGATTGGTTGTTTTGCTGAGTCAGACATTAGATAGGGTGACAGGTGTTATATGCGTTATATATCCCCCTATCCTTCTTCTTATTATTATTATGGACTAACTGTTCTTTGTTGTTGGATTGTGTCGGACTTTGGTGTGGAAATATTTTGACGTTATAGTTATAGCCTGTAGCTCTTCTGGAGTTACTGCCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGGGCATGGGGTTAGCGACCCCATCCCGTAGAAAAGCTAACTCGCTAAAAAAACGCTACCCAGAAAAAAAATTC]

[+] EMBL CD093126             [TGTAATCCCTTGCTTCTTTGTTCTGAAAGATGCTTTGATTATCCTGGGTCCATGAGATTCCCATCCTACAAGTGCATTTCGTGCTTCTTTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGGGCATTTTCCCCTTCGTGACCGGAGTACAGCAGCATCTCTCCTGTGTCTAGCCTTTGTTGTCCAGTTTGTGTCAATGGGTTTCGCTGATCCAGAGTACTGAAAGTTGTTACATGCTCTTTGATGTGTGGGTGAGAATGATAATGATTGGTTGTTTTGCTGAGTCAGACATTAGATAGGGTGACAGGTGTTATATGCGTTATATATCCCCCTATCCTTCTTCTTATTATTATTATGGACTAACTGTTCTTTGTTGTTGGATTGTGTCGGACTTTGGTGTGGAAATATTTTGACGTTATAGTTATAGCCTGTAGCTCTTCTGGAGTTACTGCCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGGGCATGGGGTTAGCGACCCCATCCCGTAGAAAAGCTAACTCGCTAAAAAAACGCTACCCAGAAAAAAAATTC]




>consensus_4326#1
TGTAATCCCTTGCTTCTTTGTTCTGAAAGATGCTTTGATTATCCTGGGTCCATGAGATTC
CCATCCTACAAGTGCATTTCGTGCTTCTTTGGACAGCATTAGAGCAACTCCCTGAGTGTG
TGGGGCATTTTCCCCTTCGTGACCGGAGTACAGCAGCATCTCTCCTGTGTCTAGCCTTTG
TTGTCCAGTTTGTGTCAATGGGTTTCGCTGATCCAGAGTACTGAAAGTTGTTACATGCTC
TTTGATGTGTGGGTGAGAATGATAATGATTGGTTGTTTTGCTGAGTCAGACATTAGATAG
GGTGACAGGTGTTATATGCGTTATATATCCCCCTATCCTTCTTCTTATTATTATTATGGA
CTAACTGTTCTTTGTTGTTGGATTGTGTCGGACTTTGGTGTGGAAATATTTTGACGTTAT
AGTTATAGCCTGTAGCTCTTCTGGAGTTACTGCCGGTCCCAAGCCCGGGTAAAGGAGGAG
GGTTGGGCATGGGGTTAGCGACCCCATCCCGTAGAAAAGCTAACTCGCTAAAAAAACGCT
ACCCAGAAAAAAAATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4326#0      TTTCTTGGGCACTTAACTATGACTGATTTTGCAGCCTCCCATAAAACTGATCTTTATCGT 60
consensus_4326#1      ------------------------------------------------------------
                                                                                  

consensus_4326#0      CGTCGTTGTTATCATTCGTGGGTACATAACATTGGATAACATTCATTGTGACACCCTCCT 120
consensus_4326#1      ----------------------------------------------TGTAATCCCTTGCT 14
                                                                    *** *  ** * **

consensus_4326#0      TTTTTGTTTTGAACGATGCTTTGATAGTTCTGGATCCATGAGATTTCCATCCTACAAGTG 180
consensus_4326#1      TCTTTGTTCTGAAAGATGCTTTGATTATCCTGGGTCCATGAGATTCCCATCCTACAAGTG 74
                      * ****** **** ***********  * **** *********** **************

consensus_4326#0      CATTTCGTGTTTCTCTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGAGCATTTTCCT 240
consensus_4326#1      CATTTCGTGCTTCTTTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGGGCATTTTCCC 134
                      ********* **** ********************************** ********* 

consensus_4326#0      CTTCGTGACCAGAGTACAACAGCATCTCTCGCGTATCTGGCCTTTGCTGTCCACCTTGAG 300
consensus_4326#1      CTTCGTGACCGGAGTACAGCAGCATCTCTCCTGTGTCTAGCCTTTGTTGTCCAGTTTGTG 194
                      ********** ******* ***********  ** *** ******* ******  *** *

consensus_4326#0      TCCAATGGGTTTCGCTGATTCCAAGTATGCCAATTTGT-ATCTCCTCATTTCCGT----- 354
consensus_4326#1      TC-AATGGGTTTCGCTGATCCAGAGTACTGAAAGTTGTTACATGCTCTTTGATGTGTGGG 253
                      ** **************** *  ****    ** **** *  * *** **   **     

consensus_4326#0      ------TGCTATTCGATAGGTCTTCC-CGGTCTCCCACATTGTGTGG------ACGTTCC 401
consensus_4326#1      TGAGAATGATAATGATTGGTTGTTTTGCTGAGTCAGACATTAGATAGGGTGACAGGTGTT 313
                            ** ** *   * * * **   * *  **  *****   * *      * **   

consensus_4326#0      ATATAC-CTATAAAAAATGTTGCTCTGGTTGTTAGAAGGAGCATCGGCC------TCGTG 454
consensus_4326#1      ATATGCGTTATATATCCCCCTATCCTTCTTCTTATTATTATTATGGACTAACTGTTCTTT 373
                      **** *  **** *      *   **  ** ***  *  *  ** * *       ** * 

consensus_4326#0      ACTTCCGAAGAATCTCGGCTTTCATCGTG-AGGCGTCATAATTCTTCCTTCAACTTGGAG 513
consensus_4326#1      GTTGTTGGATTGTGTCGGACTTTGGTGTGGAAATATTTTGACGTTATAGTTATAGCCTGT 433
                        *   * *   * ****  **    *** *    *  * *   *    * *        

consensus_4326#0      GGCAGAGTTAAAATTATTTCTTCTGGTTAGCGTTTTTTAGCGAGTTAGTTTTTCTACGGG 573
consensus_4326#1      AGCTCTTCTGGAGTTACTGCCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGGGCATGGG 493
                       **     *  * *** * *   *    ***     * *  ***   * **    * ***

consensus_4326#0      AT--GGGGTC-------------------------------------------------- 581
consensus_4326#1      GTTAGCGACCCCATCCCGTAGAAAAGCTAACTCGCTAAAAAAACGCTACCCAGAAAAAAA 553
                       *  * *  *                                                  

consensus_4326#0      ----
consensus_4326#1      ATTC 557