These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 745 fasta sequence [AGGACTTAGTTCAGATTCATACTAGTTATTCTCAGATTAAATAATGTAATGTTAACCTTTAGTAGGAATATAATTACAGACTACTGACTCTGTGCCAGTCTTCCTACTACATTACGCTGGATATTTTCCATAGCTACTTAAGGACTTCATGCATTTTTCTGTTTCGTTAACAGTATTCCAAACTTATCCATGTTTATGCATTTCACTCCTCAAATCGAATGTGGAAATACTACTTAGCTGTTTCTTGTGGTCAATGTTCAGATAGATGATACTAGATAAAATCTTATCTCCCGTTGACACATGCTTATCGACAGGTTGATGTAATTAGCTGCCAAACCATTATCTCCTTATGTAGGTACAGTATTCTGATAAGCAAGTAATTTTCTTGTTAATCTCCACCTAACTAGTTCTTATTGAAGTCACTAGGTGTTATATCCTAGTGATAATGAAAGTACGAGTAACTTTCGAGGCCTGTTAATGGACTATTGTTCTATATATATTCTTATTGTATAGCTATTGAGTAACTAGATTGTGTATATCTATATTTATCTTATTATAAGCTTCATTTTGACCTATAAATTATTATTATACGAATTACTGTCCCTAAATTCAGTTTATTGATTATTGTCTCTCACGTTCACAGCCATATTANGGCTTGATCTTGTACAAATATTATTTTCTATTTTATGATGTGGTACGGTCTGTATGTCTGG-ATATAAACCGAGTATGCTTGAAAT-AATGATTC] [+] EMBL CD082123 [AGGACTTAGTTCAGATTCATACTAGTTATTCTCAGATTAAATAATGTAATGTTAACCTTTAGTAGGAATATAATTACAGACTACTGACTCTGTGCCAGTCTTCCTACTACATTACGCTGGATATTTTCCATAGCTACTTAAGGACTTCATGCATTTTTCTGTTTCGTTAACAGTATTCCAAACTTATCCATGTTTATGCATTTCACTCCTCAAATCGAATGTGGAAATACTACTTAGCTGTTTCTTGTGGTCAATGTTCAGATAGATGATACTAGATAAAATCTTATCTCCCGTTGACACATGCTTATCGACAGGTTGATGTAATTAGCTGCCAAACCATTATCTCCTTATGTAGGTACAGTATTCTGATAAGCAAGTAATTTTCTTGTTAATCTCCACCTAACTAGTTCTTATTGAAGTCACTAGGTGTTATATCCTAGTGATAATGAAAGTACGAGTAACTTTCGAGGCCTGTTAATGGACTATTGTTCTATATATATTCTTATTGTATAGCTATTGAGTAACTAGATTGTGTATATCTATATTTATCTTATTATAAGCTTCATTTTGACCTATAAATTATTATTATACGAATTACTGTCCCTAAATTCAGTTTATTGATTATTGTCTCTCACGTTCACAGCCATATTANGGCTTGATCTTGTACAAATATTATTTTCTATTTTATGATGTGGTACGGTCTGTATGTCTGG ATATAAACCGAGTATGCTTGAAAT AATGATT ] [-] EMBL CD075738 [ tanACAGTATTCCAAACTTATCCATGTTTATGCATTTCACTCCTCAAATCGAATGTGGAAATACTACTTAGCTGTTTCTTGTGGTCAATGTTCAGATAGATGATACTAGATAAAATCTTATCTCCCGTTGACACATGCTTATCGACAGGTTGATGTAATTAGCTGCCAAACCATTATCTCCTTATGTAGGTACAGTATTTTGATAAGCAAGTAATTTTCTTGTTAATCTCCACCTAACTAGTTCTTATTGAAGTCACTAGGTGTTATATCCTAGTGATAATGAAAGTACGAGTAACTTTCGAGGCCTGTTAATGGACTATTGTTCTATATATATTCTTATTGTATAGCTATTGAGTAACTAGATTGTGTATATCTATATTTATCTTATTATAAGCTTCATTTTGACCTATAAATTATTATTATACGAATTACTGTCCCTAAATTCAGTTTATTGATTATTGTCTCTCACGTTCACAGCCATATTA GGCTTGATCTTGTACAAATATTATTTTCTATTTTATGATGTGGTACGGTCTGTATGTCTGGTATATAAACCGAGTATGCTTGAAATAAATGATTC] consensusID : consensus_4333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [GTGAATAGGGTGAACAGTAATTAATGGACTAGGTATAACTCAAGAATGGTAAATCGTATAATAATAGTCTAGAGGTCAGAATGAAGCTCATAATAAAAGGAACATGAATATGAATAGTTAAATTACTTAACAATTATACAATAGGAAATATACATATCATATTGGTCCATAAATAGTTCTCAAAGTTACCATTCATAATTCTCTACGGGATATAAAATAGATCATCAATTTTAAACTTTTTTTAAACAATGAAGCAACGAATTAAAACTAGATTAAATAAATGTATATTTTCAAATGATTAGAAAGATTTTAATCGTAATACAAAGAAAACTATTTACAGATATTGTGGTGTGGTCTACTTATATCTTCATAGGTAGTATATGGTGGTGGTCAGACATAGAATGTATTTTCGCAGAAGACCGATAAAGAAAGAACTGAAATGACGCGCAATTGTTAGGAAAATGCATANACANTGAAATTAGAGAAGATGGAT] [+] EMBL CD088135 [GTGAATAGGGTGAACAGTAATTAATGGACTAGGTATAACTCAAGAATGGTAAATCGTATAATAATAGTCTAGAGGTCAGAATGAAGCTCATAATAAAAGGAACATGAATATGAATAGTTAAATTACTTAACAATTATACAATAGGAAATATACATATCATATTGGTCCATAAATAGTTCTCAAAGTTACCATTCATAATTCTCTACGGGATATAAAATAGATCATCAATTTTAAACTTTTTTTAAACAATGAAGCAACGAATTAAAACTAGATTAAATAAATGTATATTTTCAAATGATTAGAAAGATTTTAATCGTAATACAAAGAAAACTATTTACAGATATTGTGGTGTGGTCTACTTATATCTTCATAGGTAGTATATGGTGGTGGTCAGACATAGAATGTATTTTCGCAGAAGACCGATAAAGAAAGAACTGAAATGACGCGCAATTGTTAGGAAAATGCATANACANTGAAATTAGAGAAGATGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4333#0 AGGACTTAGTTCAGATTCATACTAGTTATTCTCAGATTAAATAATGT-AATGTTAACCTT 59 consensus_4333#1 ------------------------------------GTGAATAGGGTGAACAGTAATTAA 24 * **** ** ** *** consensus_4333#0 TAGTAGGAATATAATTACAGACTACTGACTC-TGTGCCAGTCTTCCTACTACATTACGCT 118 consensus_4333#1 TGGACTAGGTATAACTCAAGAATGGTAAATCGTATAATAATAGTCTAG--AGGTCAGAAT 82 * * ***** * *** * * * ** * * * * ** * * * * consensus_4333#0 GGATATTTTCCATAGCTACTTAAGGACTTCATGCATTTTTCTGTTTCGTTAACAGTATTC 178 consensus_4333#1 GAA-GCTCATAATAAAAGGAACATGAAT--ATGAATAGTTAAATTAC-TTAACAATTATA 138 * * * *** * ** * *** ** ** ** * ****** * * consensus_4333#0 CAAACTTATCCATGTTTATGCATTTCACTCCTCAAATCGAATGTGGAAATACTACTTAGC 238 consensus_4333#1 CAATAGGAAATATACATAT-CATATTGGTCCATAAATAGTTCTCAAAGTTACCATTCA-T 196 *** * ** *** *** * *** **** * * *** * * * consensus_4333#0 TGTTTCTTGTGGTCAATGTTCAGATAGATGATACTAGATAAAATCTTATCTCCCGTTGAC 298 consensus_4333#1 AATTCTCTACGGGATATA---AAATAGATCATCAATTTTAAACTTTTTTTAAACAATGAA 253 ** * ** ** * ****** ** **** * ** * * *** consensus_4333#0 ACATGCTTATCGACAGGTTGATGTAATTAGCTGCCAAACCATTATCTCCTTATGTAGGTA 358 consensus_4333#1 GCA-ACGAATTAA-AACTAGAT-TAAATAAATGT-ATATTTTCAAATGATTAGAAAGATT 309 ** * ** * * * *** *** ** ** * * * * * *** ** * consensus_4333#0 CAGTATTCTGATAAGCAAGTAATTTTCTTGTTAATCTCCACCTAACTAGTTCTTATTGAA 418 consensus_4333#1 TTA-ATCGTAATACA-AAGAAAACTATTTACAGATATTGTGGTG--TGGTCTACTTATAT 365 ** * *** *** ** * ** ** * * * ** * * consensus_4333#0 GTCACTAGGTGTTATATCCTAGTGATAATGAA-AGTACGAGTAACTTTCGAGGCCTGTTA 477 consensus_4333#1 CTTCATAGGTAGTATATGGTGGTGGTCAGACATAGAATGTATTTTCGCAGAAGACCGATA 425 * ***** ***** * *** * * * ** * * * ** * * * ** consensus_4333#0 ATGGACTATTGTTCTATATATATTCTTATTGTATAGCTATTGAGTAACTAGATTGTGTAT 537 consensus_4333#1 AAGAAAGAACTGAAATGACGCGCAATTGTTAGGAAAATGCATANACANTGAAATTAGAGA 485 * * * * * ** ** * * * * * * * * consensus_4333#0 ATCTATATTTATCTTATTATAAGCTTCATTTTGACCTATAAATTATTATTATACGAATTA 597 consensus_4333#1 AGATGGAT---------------------------------------------------- 493 * * ** consensus_4333#0 CTGTCCCTAAATTCAGTTTATTGATTATTGTCTCTCACGTTCACAGCCATATTANGGCTT 657 consensus_4333#1 ------------------------------------------------------------ consensus_4333#0 GATCTTGTACAAATATTATTTTCTATTTTATGATGTGGTACGGTCTGTATGTCTGGATAT 717 consensus_4333#1 ------------------------------------------------------------ consensus_4333#0 AAACCGAGTATGCTTGAAATAATGATTC 745 consensus_4333#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||