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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1371 fasta sequence
[TCTCAAGCAGGCTATGTCAACTCCAATTTCTAGTCTGAACAGTTTATTTTCATTCACATCTCCTGCTGTGAAAAGACTTCTTGGTTGGAAACAAGGAGACGAAGAAGAAAAATGGGCTGAAAAAGCGGTTGATTCACTTGTAAAAAAACTTAAAAAGAAAAAGGGTGCACTTGAAGCTTTAGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGACATAGTGAATACCCTAGTCTTAGTACTGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATCTAATCTAGGAATGTTCCCGATGACAGACTCAGCAATGCCCTACAATGTAAATTATCCACACAACTTCAGTCATTCTCCGTCTCTTCCTCCCGGAAACAGTGGAACTTCTACAGACAGCACAGTTGCTGGACCTATCCATTCACTTAATAGCTCAAACCTTCAATCTGGTTACCAAACTCAACCCAATCAAGATCCGGCCTCCTCTGGACAAACTATGCATCCAGTCAATTATCAAGAACCTAAATACTGGTGTTCCATTGTTTATTATGAACTAAATAATCGTGTCGGTGAAGCATTTAACGCTTCACAATTAAGCATAATCATTGATGGTTTTACAGATCCATCAAATAATTCAGATCGTTTTTGTCTTGGCCTTTTGTCGAATGTCAACCGAAACTCTACAATCGAGAATACAAGACGTCATATTGGAAAAGGTGTTCATCTTTATTATGTTGGTGGCGAAGTATACGCTGAATGTTTATCGGATAGTAGTATATTTGTACAATCACGTAATTGTAATTATCATCATAATTTTCATCCAACCACAGTGTGTAAAATTCCACCTGGTTGTTCATTGAAAATATTCTCAAATCAAGAATTTGCTCACCTACTTAGTCGTACAGTACATCATGGTTTTGAAGCTGTTTATGAATTAACTAAAATGTGTACAATACGTATGAGTTTTGTAAAAGGTTGGGGTGCTGAATATCATCGACAAGATGTTACATCTACTCCATGTTGGGTTGAAATCCATTTGAATGGTCCATTACAATGGCTTGATCGTGTACTTACACAAATGGGTACACCAAGAAATCCGATTTCATC]
[+] EMBL AF215933 [TCTCAAGCAGGCTATGTCAACTCCAATTTCTAGTCTGAACAGTTTATTTTCATTCACATCTCCTGCTGTGAAAAGACTTCTTGGTTGGAAACAAGGAGACGAAGAAGAAAAATGGGCTGAAAAAGCGGTTGATTCACTTGTAAAAAAACTTAAAAAGAAAAAGGGTGCACTTGAAGCTTTAGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGACATAGTGAATACCCTAGTCTTAGTACTGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATCTAATCTAGGAATGTTCCCGATGACAGACTCAGCAATGCCCTACAATGTAAATTATCCACACAACTTCAGTCATTCTCCGTCTCTTCCTCCCGGAAACAGTGGAACTTCTACAGACAGCACAGTTGCTGGACCTATCCATTCACTTAATAGCTCAAACCTTCAATCTGGTTACCAAACTCAACCCAATCAAGATCCGGCCTCCTCTGGACAAACTATGCATCCAGTCAATTATCAAGAACCTAAATACTGGTGTTCCATTGTTTATTATGAACTAAATAATCGTGTCGGTGAAGCATTTAACGCTTCACAATTAAGCATAATCATTGATGGTTTTACAGATCCATCAAATAATTCAGATCGTTTTTGTCTTGGCCTTTTGTCGAATGTCAACCGAAACTCTACAATCGAGAATACAAGACGTCATATTGGAAAAGGTGTTCATCTTTATTATGTTGGTGGCGAAGTATACGCTGAATGTTTATCGGATAGTAGTATATTTGTACAATCACGTAATTGTAATTATCATCATAATTTTCATCCAACCACAGTGTGTAAAATTCCACCTGGTTGTTCATTGAAAATATTCTCAAATCAAGAATTTGCTCACCTACTTAGTCGTACAGTACATCATGGTTTTGAAGCTGTTTATGAATTAACTAAAATGTGTACAATACGTATGAGTTTTGTAAAAGGTTGGGGTGCTGAATATCATCGACAAGATGTTACATCTACTCCATGTTGGGTTGAAATCCATTTGAATGGTCCATTACAATGGCTTGATCGTGTACTTACACAAATGGGTACACCAAGAAATCCGATTTCATC]
[-] EMBL CD195336 [ TCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGCTTTGCCTCCAGTCCTTGTTCCTCGACATAGTGAATACCCTAGTCTTAGTACTGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATCTAATCTAGGAATGTTCC ]
consensusID : consensus_4336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence
[AGACGAAGAAGAAAAATGGGCTGAAAAAGCGGTTGACTCACTTGTAAAAAACTTAAAAAGAAAAAGGGTGCCCTTGAAGCTTTAGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGCCACCCCGCAATACCCTAGTTTTAGTACCGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATTTAATCTAGGAATGTTCCCGATGACAGACCCAGAGCGGGCCGG]
[-] EMBL CD200819 [AGACGAAGAAGAAAAATGGGCTGAAAAAGCGGTTGACTCACTTGTAAAAAACTTAAAAAGAAAAAGGGTGCCCTTGAAGCTTTAGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGCCACCCCGCAATACCCTAGTTTTAGTACCGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATTTAATCTAGGAATGTTCCCGATGACAGACCCAGAGCGGGCCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4336#0 TCTCAAGCAGGCTATGTCAACTCCAATTTCTAGTCTGAACAGTTTATTTTCATTCACATC 60
consensus_4336#1 ------------------------------------------------------------
consensus_4336#0 TCCTGCTGTGAAAAGACTTCTTGGTTGGAAACAAGGAGACGAAGAAGAAAAATGGGCTGA 120
consensus_4336#1 ------------------------------------AGACGAAGAAGAAAAATGGGCTGA 24
************************
consensus_4336#0 AAAAGCGGTTGATTCACTTGTAAAAAAACTTAAAAAGAAAAAGGGTGCACTTGAAGCTTT 180
consensus_4336#1 AAAAGCGGTTGACTCACTTGTAAAAAA-CTTAAAAAGAAAAAGGGTGCCCTTGAAGCTTT 83
************ ************** ******************** ***********
consensus_4336#0 AGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCT 240
consensus_4336#1 AGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCT 143
************************************************************
consensus_4336#0 CGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGT 300
consensus_4336#1 CGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGT 203
************************************************************
consensus_4336#0 ATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTT 360
consensus_4336#1 ATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTT 263
************************************************************
consensus_4336#0 CCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGA 420
consensus_4336#1 CCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGA 323
************************************************************
consensus_4336#0 AAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGACATAGTG-AATACCCTAGTCTTAGTA 479
consensus_4336#1 AAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGCCACCCCGCAATACCCTAGTTTTAGTA 383
********************************* ** * *********** ******
consensus_4336#0 CTGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTT 539
consensus_4336#1 CCGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTT 443
* **********************************************************
consensus_4336#0 CAGCATCTAATCTAGGAATGTTCCCGATGACAGACTCAGCAATGCCCTACAATGTAAATT 599
consensus_4336#1 CAGCATTTAATCTAGGAATGTTCCCGATGACAGACCCAGAGCGGGCCGG----------- 492
****** **************************** *** * **
consensus_4336#0 ATCCACACAACTTCAGTCATTCTCCGTCTCTTCCTCCCGGAAACAGTGGAACTTCTACAG 659
consensus_4336#1 ------------------------------------------------------------
consensus_4336#0 ACAGCACAGTTGCTGGACCTATCCATTCACTTAATAGCTCAAACCTTCAATCTGGTTACC 719
consensus_4336#1 ------------------------------------------------------------
consensus_4336#0 AAACTCAACCCAATCAAGATCCGGCCTCCTCTGGACAAACTATGCATCCAGTCAATTATC 779
consensus_4336#1 ------------------------------------------------------------
consensus_4336#0 AAGAACCTAAATACTGGTGTTCCATTGTTTATTATGAACTAAATAATCGTGTCGGTGAAG 839
consensus_4336#1 ------------------------------------------------------------
consensus_4336#0 CATTTAACGCTTCACAATTAAGCATAATCATTGATGGTTTTACAGATCCATCAAATAATT 899
consensus_4336#1 ------------------------------------------------------------
consensus_4336#0 CAGATCGTTTTTGTCTTGGCCTTTTGTCGAATGTCAACCGAAACTCTACAATCGAGAATA 959
consensus_4336#1 ------------------------------------------------------------
consensus_4336#0 CAAGACGTCATATTGGAAAAGGTGTTCATCTTTATTATGTTGGTGGCGAAGTATACGCTG 1019
consensus_4336#1 ------------------------------------------------------------
consensus_4336#0 AATGTTTATCGGATAGTAGTATATTTGTACAATCACGTAATTGTAATTATCATCATAATT 1079
consensus_4336#1 ------------------------------------------------------------
consensus_4336#0 TTCATCCAACCACAGTGTGTAAAATTCCACCTGGTTGTTCATTGAAAATATTCTCAAATC 1139
consensus_4336#1 ------------------------------------------------------------
consensus_4336#0 AAGAATTTGCTCACCTACTTAGTCGTACAGTACATCATGGTTTTGAAGCTGTTTATGAAT 1199
consensus_4336#1 ------------------------------------------------------------
consensus_4336#0 TAACTAAAATGTGTACAATACGTATGAGTTTTGTAAAAGGTTGGGGTGCTGAATATCATC 1259
consensus_4336#1 ------------------------------------------------------------
consensus_4336#0 GACAAGATGTTACATCTACTCCATGTTGGGTTGAAATCCATTTGAATGGTCCATTACAAT 1319
consensus_4336#1 ------------------------------------------------------------
consensus_4336#0 GGCTTGATCGTGTACTTACACAAATGGGTACACCAAGAAATCCGATTTCATC 1371
consensus_4336#1 ----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||