These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [TGATCTGACATGTAGGTTAGGGAAGGGAGCTTCCTATGAGGAAATCAAGGCTGCAGTTAAAGCAGCTGCATCTGGACCATTGAAGGGGATTTTGGAATACACTGAAGATGAGGTTGTCAGTTCAGACTTTGTTGGAAGTACCAGTTCATCTATCTTTGATGCGAAGGCTGGGATATCTCTTAACAACAACTTCGTGAAATTAGTTTCATGGTATGATAATGAGTTTGGATACAGATGCCGCGTAGTTGATCTCATTACGCACATGCATAAAGTCGACCATGCATAATGAAGTAGTTTCAACTGTAGCCGACTAACTNTTTGTCAATCGATAGATAACGAATAAAGCGTTAATCTGCCAAAAATGGATTGGAAAATTCCTAGCAATATAACT] [+] EMBL AI976193 [TGATCTGACATGTAGGTTAGGGAAGGGAGCTTCCTATGAGGAAATCAAGGCTGCAGTTAAAGCAGCTGCATCTGGACCATTGAAGGGGATTTTGGAATACACTGAAGATGAGGTTGTCAGTTCAGACTTTGTTGGAAGTACCAGTTCATCTATCTTTGATGCGAAGGCTGGGATATCTCTTAACAACAACTTCGTGAAATTAGTTTCATGGTATGATAATGAGTTTGGATACAGATGCCGCGTAGTTGATCTCATTACGCACATGCATAAAGTCGACCATGCATAATGAAGTAGTTTCAACTGTAGCCGACTAACTNTTTGTCAATCGATAGATAACGAATAAAGCGTTAATCTGCCAAAAATGGATTGGAAAATTCCTAGCAATATAACT] consensusID : consensus_4349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [GAGTAATAAATGCAAACGTCTCTTGCCTACGTGATTCGAGGTTGCTTCGCGTTTGACTTCACGGGACGACTCTGAAATGTTAGGTAAACTTGAGTTATGGTGAACGAAAAATCAGACGGAATGTCAACGCACAGATCTAGGCTGCGGGCAAACGAGAAGCACGTTTACTAAGCAACTTAGACGACCACGCACGCACAAACTCTCATCAATTAAAAGCCATACATTCTCAGTAGCTTATTCATAAAGCACTTAACTTATTTAGGGGCGACCG] [+] EMBL CD136030 [GAGTAATAAATGCAAACGTCTCTTGCCTACGTGATTCGAGGTTGCTTCGCGTTTGACTTCACGGGACGACTCTGAAATGTTAGGTAAACTTGAGTTATGGTGAACGAAAAATCAGACGGAATGTCAACGCACAGATCTAGGCTGCGGGCAAACGAGAAGCACGTTTACTAAGCAACTTAGACGACCACGCACGCACAAACTCTCATCAATTAAAAGCCATACATTCTCAGTAGCTTATTCATAAAGCACTTAACTTATTTAGGGGCGACCG] consensusID : consensus_4349#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence [ACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATCATCAAGTCGGATGGAAGAGTCGCCGACTCCAGTTGATCGCTCTTCATGTCGACCACACTTGCACCAATCCCATCCACACACGATGAATCACCCGTACCAACGACAGGTCCAACCTCAGACAACCTTCCCTTCTCCAGGTGTCGTCGAT] [+] EMBL CD142901 [ACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATCATCAAGTCGGATGGAAGAGTCGCCGACTCCAGTTGATCGCTCTTCATGTCGACCACACTTGCACCAATCCCATCCACACACGATGAATCACCCGTACCAACGACAGGTCCAACCTCAGACAACCTTCCCTTCTCCAGGTGTCGTCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4349#1 ---------GAGTAATAAATGCAAACGTCTCTTGCCTACGTGATTCGAGGTTGCT-TCGC 50 consensus_4349#2 ---------ACGTCACGATCG-AAACTCATCTCACC-ACGT---TCAA--TCACTCTCAC 44 consensus_4349#0 TGATCTGACATGTAGGTTAGGGAAGGGAGCTTCCTATGAGGAAATCAAGGCTGCAGTTAA 60 ** * ** * * ** * * * consensus_4349#1 GTTTGACTTCACGGGACGACTCTGAAATGTTA---GGTAAACTTGAGTTATGGT----GA 103 consensus_4349#2 ATCTGTCATCATCAAGTCGGATGGAAGAGTC-----GCCGACTCCAGTTG---------- 89 consensus_4349#0 AGCAGCTGCATCTGGACCATTGAAGGGGATTTTGGAATACACTGAAGATGAGGTTGTCAG 120 * * *** ** * consensus_4349#1 ACGAAAAATCAGACGGAATGTCAACGCACAGATCTAGGCTGCGGGCAAACGAGAAGCACG 163 consensus_4349#2 ATCGCTCTTCATGTCGACCACACTTGCACCAATCCCATCCACACACGAT---GAATCACC 146 consensus_4349#0 TTCAGACTTTGTTGGAAGTACCAGTTCATCTATCTTTGATGCGAAGGCT--GGGATATCT 178 * * ** *** * * * * consensus_4349#1 TTTACTAAGCAACTTAG-------ACGACCACGCACGCACAAACTCTCATCAATTAAAAG 216 consensus_4349#2 CGTACCAA-CGAC-----------AGGTCCAACCTCAGACAACCTTCCCTTCTCCAGGTG 194 consensus_4349#0 CTTAACAA-CAACTTCGTGAAATTAGTTTCATGGTATGATAATGAGTTTGGATACAGATG 237 ** ** * ** * ** * ** * * consensus_4349#1 CCA-----TACATTCTCAGTAGCTTATTCATAAAGCACTTAACTTATTTAGGGGCGACCG 271 consensus_4349#2 TCG-----TCGAT----------------------------------------------- 202 consensus_4349#0 CCGCGTAGTTGATCTCATTACGCACATGCATAAAGTCGACCATGCATAATGAAGTAGTTT 297 * * ** consensus_4349#1 ------------------------------------------------------------ consensus_4349#2 ------------------------------------------------------------ consensus_4349#0 CAACTGTAGCCGACTAACTNTTTGTCAATCGATAGATAACGAATAAAGCGTTAATCTGCC 357 consensus_4349#1 ---------------------------------- consensus_4349#2 ---------------------------------- consensus_4349#0 AAAAATGGATTGGAAAATTCCTAGCAATATAACT 391 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||