cluster # 4353

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Schistosoma mansoni
cluster # 4353 cluster # 4353 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4353#0 length = 442 sequences # 1

consensus_4353#1 length = 311 sequences # 1
consensus_4353#2 length = 258 sequences # 1

consensusID : consensus_4353#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [ATTCAAAAATACACTCGCTCGCTCACATCTCTCGGTACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCCTCGATACAACTACACCTCTTCACAGTCCGCTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCCTCGATACAACTACACCTCTTCACAGTCCAC]

[+] EMBL CD091530             [ATTCAAAAATACACTCGCTCGCTCACATCTCTCGGTACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCCTCGATACAACTACACCTCTTCACAGTCCGCTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCCTCGATACAACTACACCTCTTCACAGTCCAC]




>consensus_4353#0
ATTCAAAAATACACTCGCTCGCTCACATCTCTCGGTACAACTACACCTCTTCACAGTCCA
CTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCAC
TCTTGTCGCCCTCGATACAACTACACCTCTTCACAGTCCGCTCTCTCCATCGCCAAACCA
ACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCG
CCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCT
CGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACC
AACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCCTCGATACA
ACTACACCTCTTCACAGTCCAC

consensusID : consensus_4353#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [GAGGTTGGCAAATGGATCGTACCTGAAGATTATAATCATGTCCAAGCAGAAGTAACCCATTTATTCTCAGAATCAGATGCAGATCAGGTAGAGCTTATGTTGATCATTATGTTTTCGTAAATATGATCTCAGATATGACCAGTGTCCTAATAATACTTGTCAGTTCGCCACTGTAGGTTTCTGTTGCTATTTATATCGAGAGACCTAAAAAGTAAGGCGGCCCTTAATTGTTTTCCGTACTAATCGTAACCTTGTATTTTCCAACCAAATGAATTAGTTTAATATTGAATTATGAAAACTTCCGGAACTAG]

[+] EMBL CD188195             [GAGGTTGGCAAATGGATCGTACCTGAAGATTATAATCATGTCCAAGCAGAAGTAACCCATTTATTCTCAGAATCAGATGCAGATCAGGTAGAGCTTATGTTGATCATTATGTTTTCGTAAATATGATCTCAGATATGACCAGTGTCCTAATAATACTTGTCAGTTCGCCACTGTAGGTTTCTGTTGCTATTTATATCGAGAGACCTAAAAAGTAAGGCGGCCCTTAATTGTTTTCCGTACTAATCGTAACCTTGTATTTTCCAACCAAATGAATTAGTTTAATATTGAATTATGAAAACTTCCGGAACTAG]




>consensus_4353#1
GAGGTTGGCAAATGGATCGTACCTGAAGATTATAATCATGTCCAAGCAGAAGTAACCCAT
TTATTCTCAGAATCAGATGCAGATCAGGTAGAGCTTATGTTGATCATTATGTTTTCGTAA
ATATGATCTCAGATATGACCAGTGTCCTAATAATACTTGTCAGTTCGCCACTGTAGGTTT
CTGTTGCTATTTATATCGAGAGACCTAAAAAGTAAGGCGGCCCTTAATTGTTTTCCGTAC
TAATCGTAACCTTGTATTTTCCAACCAAATGAATTAGTTTAATATTGAATTATGAAAACT
TCCGGAACTAG

consensusID : consensus_4353#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence

                              [TACTCCCGTCTAGTCAGTACACTCCAGCTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCCCAACCAGCGCCGCCCCGTCCAGCGCCATCTATTACCGCCTGCCGGATACCCCGGTCGGCCACCACATCAAGGAGTATCCCAGCGGGCTGCGCCAGCTG]

[-] EMBL CD156898             [TACTCCCGTCTAGTCAGTACACTCCAGCTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCCCAACCAGCGCCGCCCCGTCCAGCGCCATCTATTACCGCCTGCCGGATACCCCGGTCGGCCACCACATCAAGGAGTATCCCAGCGGGCTGCGCCAGCTG]




>consensus_4353#2
TACTCCCGTCTAGTCAGTACACTCCAGCTCAAAAATACACTCGCTCACTCACATCTCTCG
ATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTC
GCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCCCAACCAGCGCCGCCCCGTCC
AGCGCCATCTATTACCGCCTGCCGGATACCCCGGTCGGCCACCACATCAAGGAGTATCCC
AGCGGGCTGCGCCAGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4353#0      --------------------------ATTCAAAAATACACTCGCTCGCTCACATCTCTCG 34
consensus_4353#2      TACTCCCGTCTAGTCAGTACACTCCAGCTCAAAAATACACTCGCTCACTCACATCTCTCG 60
consensus_4353#1      --------------------------------GAGGTTGGCAAATGGATCGTACCTGAAG 28
                                                       *          *   **  * **   *

consensus_4353#0      GT-ACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCA---CCGT 90
consensus_4353#2      AT-ACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCA---CCGT 116
consensus_4353#1      ATTATAATCATGTCCAAGCAGAAGTAACCCATTTATTCTCAGAATCAGATGCAGATCAGG 88
                       * * **  *   *    ** *    ** *  *   ** *  ** **    **   * * 

consensus_4353#0      CTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCC-CTCGATACAACTACACCTC 149
consensus_4353#2      CTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCCCAACCAGCGCCGCCCC 176
consensus_4353#1      TAGAGCTTATGTTGATCATTATGTTTTCGTAAATATGATC-TCAGATATGACCAGTGTCC 147
                          ***  **    **** *      *     * *   *     *     *       *

consensus_4353#0      TTCACAGTCCGCTCTCTCCATCGCC--AAACCAACACCACCGTCTTCGCTCCTGAAACTC 207
consensus_4353#2      GTC-CAGCGCCATCTATT-ACCGCC--TGCCGGATACCCCGGTCGGCC-------ACCAC 225
consensus_4353#1      TAATAATACTTGTCAGTTCGCCACTGTAGGTTTCTGTTGCTATTTATATCGAGAGACCTA 207
                           *      **  *    * *               *  *            * *  

consensus_4353#0      ATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTA 267
consensus_4353#2      ATCAAGGAGTATCCCAGCGGGCTGCGCCAGCTG--------------------------- 258
consensus_4353#1      AAAAGTAAGGCGGCCCTTAATTGTTTTCCGTACTAATCGTAACCTTGTATTTTCCAACCA 267
                      *  *   *      *            * *                              

consensus_4353#0      GTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACAC 327
consensus_4353#2      ------------------------------------------------------------
consensus_4353#1      AATGAATTAGTTTAATATTGAATTATGAAAACTTCCGGAACTAG---------------- 311
                                                                                  

consensus_4353#0      CTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACT 387
consensus_4353#2      ------------------------------------------------------------
consensus_4353#1      ------------------------------------------------------------
                                                                                  

consensus_4353#0      CATCAACCAACCACTCTTGTCGCCCTCGATACAACTACACCTCTTCACAGTCCAC 442
consensus_4353#2      -------------------------------------------------------
consensus_4353#1      -------------------------------------------------------