cluster # 4355

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Schistosoma mansoni
cluster # 4355 cluster # 4355 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4355#0 length = 282 sequences # 1

consensus_4355#1 length = 266 sequences # 2

consensusID : consensus_4355#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGACGTGCACACATGCTCCTATATTTTCACTCTAACGGTTTCNCTTTAAACGCCACTCNGCCATTTGTTACCGCAACTGGTTTCCCAAGAAATTTTCAGGGTGGATGCTCTGAGACACAGCCAAGACATTAAGGTCTACGTCTTAATACTTGAGGAAGCAGTTTCCTTATACTCTTTTGAAGGATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACC]

[+] EMBL CD187144             [GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGACGTGCACACATGCTCCTATATTTTCACTCTAACGGTTTCNCTTTAAACGCCACTCNGCCATTTGTTACCGCAACTGGTTTCCCAAGAAATTTTCAGGGTGGATGCTCTGAGACACAGCCAAGACATTAAGGTCTACGTCTTAATACTTGAGGAAGCAGTTTCCTTATACTCTTTTGAAGGATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACC]




>consensus_4355#0
GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGA
CGTGCACACATGCTCCTATATTTTCACTCTAACGGTTTCNCTTTAAACGCCACTCNGCCA
TTTGTTACCGCAACTGGTTTCCCAAGAAATTTTCAGGGTGGATGCTCTGAGACACAGCCA
AGACATTAAGGTCTACGTCTTAATACTTGAGGAAGCAGTTTCCTTATACTCTTTTGAAGG
ATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACC

consensusID : consensus_4355#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 266
fasta sequence

                              [GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGAGTGCACACAGCTCCATATTTTCATCTAAGGTTTCCTTTAAAGCCACTCGCCTTTGTTCTGCAATGGTTTCCCAATAATTTTCAGGTGGATGCTCTGAGCACAGCCAAGCATTAAGGTCTACGTCTTCTACTTGGGAAGCAGTTTCCTTATACTCTTTTGAAGGATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACCA]

[+] EMBL CD132353             [GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGAGTGCACACAGCTCCATATTTTCATCTAAGGTTTCCTTTAAAGCCACTCGCCTTTGTTCTGCAATGGTTTCCCAATAATTTTCAGGTGGATGCTCTGAGCACAGCCAAGCATTAAGGTCTACGTCTTCTACTTGGGAAGCAGTTTCCTTATACTCTTTTGAAGGATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACC ]
[-] EMBL CD132300             [ ATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGAGTGCCCACAGCTCCATATTTTCATCTAAGGTTTCCTTTAAAGCCACTCGCCTTTGTTCCGCAATGGTTTCCCAATAATTTTCAGGTGGATGCTCTGAGCACAGCCAAGCATTAAGGTCTACGTCTTCTACTTGGGAAGCAGTTCCCTTATACTCTTTTGAAGGATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACCA]




>consensus_4355#1
GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGA
GTGCACACAGCTCCATATTTTCATCTAAGGTTTCCTTTAAAGCCACTCGCCTTTGTTCTG
CAATGGTTTCCCAATAATTTTCAGGTGGATGCTCTGAGCACAGCCAAGCATTAAGGTCTA
CGTCTTCTACTTGGGAAGCAGTTTCCTTATACTCTTTTGAAGGATTAGGACTCTGATCTT
TCTGGCTTTTAGACCGCAGAGCACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4355#0      GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGA 60
consensus_4355#1      GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGA 60
                      ************************************************************

consensus_4355#0      CGTGCACACATGCTCCTATATTTTCACTCTAACGGTTTCNCTTTAAACGCCACTCNGCCA 120
consensus_4355#1      -GTGCACACA-GCTCC-ATATTTTCA-TCTAA-GGTTTCCTTT--AAAGCCACTCGCC-- 111
                       ********* ***** ********* ***** ******  **  ** *******  *  

consensus_4355#0      TTTGTTACCGCAACTGGTTTCCCAAGAAATTTTCAGGGTGGATGCTCTGAGACACAGCCA 180
consensus_4355#1      TTTGTT-CTGCAA-TGGTTTCCCAATAA-TTTTCAGG-TGGATGCTCTGAG-CACAGCCA 166
                      ****** * **** *********** ** ******** ************* ********

consensus_4355#0      AGACATTAAGGTCTACGTCTTAATACTTGAGGAAGCAGTTTCCTTATACTCTTTTGAAGG 240
consensus_4355#1      AG-CATTAAGGTCTACGTCTTC-TACTTG-GGAAGCAGTTTCCTTATACTCTTTTGAAGG 223
                      ** ******************  ****** ******************************

consensus_4355#0      ATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACC- 282
consensus_4355#1      ATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACCA 266
                      ******************************************