These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [NNNNNNNNNNNNNNNACTTTAAGTCATACCTCTGTGTGTAACTTGAACATGAACATGAATTCTTATTATGGTTACTGTGATTTTTTATTTTAACTTTGATATATGTATTTTTGGTCTCCTTCACCTTATCACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGNNNNNNNNCACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTTCTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACATTTGCTTTGAAAATTCTTCGGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGTTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTTCAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTTTGTTTAACAGTAGAGCGTTTACAGATTGCATAGCTATGATATACGTACTATCCTTGTTTCCTTTCACAATGGAACAGAAGAACTCTTGTATAA] [+] EMBL CD080952 [NNNNNNNNNNNNNNNACTTTAAGTCATACCTCTGTGTGTAACTTGAACATGAACATGAATTCTTATTATGGTTACTGTGATTTTTTATTTTAACTTTGATATATGTATTTTTGGTCTCCTTCACCTTATCACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGNNNNNNNNCACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTTCTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACATTTGCTTTGAAAATTCTTCGGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGTTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTTCAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTTTGTTTAACAGTAGAGCGTTTACAGATTGCATAGCTATGATATACGTACTATCCTTGTTTCCTTTCACAATGGAACAGAAGAACTCTTGTATAA] consensusID : consensus_4358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 343 fasta sequence [ACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGCTGAAATCCACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTTCTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACATTTGCTTTGAAAATTCTTCGGACTACGATCCTAATGACTAGTAAATGTTTAAAATCAAAGTTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTTCAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTT] [+] EMBL CD156323 [ACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGCTGAAATCCACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTTCTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACATTTGCTTTGAAAATTCTTCGGACTACGATCCTAATGACTAGTAAATGTTTAAAATCAAAGTTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTTCAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTT ] [-] EMBL CD156500 [ CCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGCTGAAATCCACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTTCTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACATTTGCTTTGAAAATTCTTCGGACTACGATCTTAATGACTAGTAAATGTTTAAAATCAAAGTTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTTCAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4358#0 NNNNNNNNNNNNNNNACTTTAAGTCATACCTCTGTGTGTAACTTGAACATGAACATGAAT 60 consensus_4358#1 ------------------------------------------------------------ consensus_4358#0 TCTTATTATGGTTACTGTGATTTTTTATTTTAACTTTGATATATGTATTTTTGGTCTCCT 120 consensus_4358#1 ------------------------------------------------------------ consensus_4358#0 TCACCTTATCACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGNNNNNNNNC 180 consensus_4358#1 ----------ACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGCTGAAATCC 50 ***************************************** * consensus_4358#0 ACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTT 240 consensus_4358#1 ACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTT 110 ************************************************************ consensus_4358#0 CTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACA 300 consensus_4358#1 CTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACA 170 ************************************************************ consensus_4358#0 TTTGCTTTGAAAATTCTTCGGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNN-CAAAG 359 consensus_4358#1 TTTGCTTTGAAAATTCTTCGGACTACGATCCTAATGACTAGTAAATGTTTAAAATCAAAG 230 ************************* ***** consensus_4358#0 TTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTT 419 consensus_4358#1 TTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTT 290 ************************************************************ consensus_4358#0 CAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTTTGTTTAA 479 consensus_4358#1 CAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTT------- 343 ***************************************************** consensus_4358#0 CAGTAGAGCGTTTACAGATTGCATAGCTATGATATACGTACTATCCTTGTTTCCTTTCAC 539 consensus_4358#1 ------------------------------------------------------------ consensus_4358#0 AATGGAACAGAAGAACTCTTGTATAA 565 consensus_4358#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||