cluster # 436

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Schistosoma mansoni
cluster # 436 cluster # 436 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_436#0 length = 355 sequences # 1

consensus_436#1 length = 245 sequences # 1

consensusID : consensus_436#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 355
fasta sequence

                              [CAATTGCCGCAGCTGTCGGCTCGTTAATGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCTGCCCAAATAACTTTCAGCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCTCCCCAGCGGAAAACATCTTTTTCTCACCCTTATACTCAACACAAATCTTCAGCTTCCCACCGACTTGAGTCACCTCGATTATCAATTGAACCTGTCCTTGGTGTTAAATTGAGCTTGTCACGATCTGCAAAGTTAGGTTCTGCTGTGTCGTAAAACAATGACT]

[+] EMBL CD196205             [CAATTGCCGCAGCTGTCGGCTCGTTAATGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCTGCCCAAATAACTTTCAGCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCTCCCCAGCGGAAAACATCTTTTTCTCACCCTTATACTCAACACAAATCTTCAGCTTCCCACCGACTTGAGTCACCTCGATTATCAATTGAACCTGTCCTTGGTGTTAAATTGAGCTTGTCACGATCTGCAAAGTTAGGTTCTGCTGTGTCGTAAAACAATGACT]




>consensus_436#0
CAATTGCCGCAGCTGTCGGCTCGTTAATGATTCTCAACACATTAAGACCAGCTATAGCAC
CTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAG
CGTCACTCACCGTCCTGCCCAAATAACTTTCAGCAACCTCCTTCATCTTCGTCAACACCA
TTGACGAAATCTCCCCAGCGGAAAACATCTTTTTCTCACCCTTATACTCAACACAAATCT
TCAGCTTCCCACCGACTTGAGTCACCTCGATTATCAATTGAACCTGTCCTTGGTGTTAAA
TTGAGCTTGTCACGATCTGCAAAGTTAGGTTCTGCTGTGTCGTAAAACAATGACT

consensusID : consensus_436#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [CTCACGGAATTCACGTTTCCGCGGGCGGGATAGCCGAGATCGTGGTCGTGACATGCCGCGTGGACGACGAGATGATTTTCGAATCTCTCCGAACCGCCGAAATGATGATCGTGGTCGCCGTGACTACAGGTAAAAATTGATGTGGTTAGGAGTAAACGTGATGTAATTTAGTGATTCCAGGCTTCTCAACAACTTTTCTTTATATTTCAGAGGCGGTTACAATGCTTCACGTGATCGTAGTCGAG]

[+] EMBL CD067445             [CTCACGGAATTCACGTTTCCGCGGGCGGGATAGCCGAGATCGTGGTCGTGACATGCCGCGTGGACGACGAGATGATTTTCGAATCTCTCCGAACCGCCGAAATGATGATCGTGGTCGCCGTGACTACAGGTAAAAATTGATGTGGTTAGGAGTAAACGTGATGTAATTTAGTGATTCCAGGCTTCTCAACAACTTTTCTTTATATTTCAGAGGCGGTTACAATGCTTCACGTGATCGTAGTCGAG]




>consensus_436#1
CTCACGGAATTCACGTTTCCGCGGGCGGGATAGCCGAGATCGTGGTCGTGACATGCCGCG
TGGACGACGAGATGATTTTCGAATCTCTCCGAACCGCCGAAATGATGATCGTGGTCGCCG
TGACTACAGGTAAAAATTGATGTGGTTAGGAGTAAACGTGATGTAATTTAGTGATTCCAG
GCTTCTCAACAACTTTTCTTTATATTTCAGAGGCGGTTACAATGCTTCACGTGATCGTAG
TCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_436#0      CAATTGCCGCAGCTGTCGGCTCGTTAATGATTCTCAACACATTAAGACCAGCTATAGCAC 60
consensus_436#1      ------------------------------------------------------------
                                                                                 

consensus_436#0      CTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAG 120
consensus_436#1      ------CTCACGG-AATTCACGTTT-CCGCGGGCGGGATA-GCCGAGATCGTGGTCGTGA 51
                           **  **    ** *****  * *     *   ** ** *  * ***  *     

consensus_436#0      CGTCACTCACCGTCCTGCCCAAATAACTTTCAGCAACCTCCTTCATCTTCGTCAACACCA 180
consensus_436#1      CATGCCGCGTGGAC--GACGAGATGATTTTCG--AATCTCTCCGAAC--CGCCGAAATGA 105
                     * *  * *   * *  * * * ** * ****   ** ***    * *  ** * * *  *

consensus_436#0      TTGACGAAATCTCCCCAGCGGAAAACATCTTTTTCTCACCCTTATACTCAACACAAATCT 240
consensus_436#1      TGATCGTGGTCGCCGTGACTACAGGTAAAAATTGATGTGGTTAGGAGTAAACGTGA---T 162
                     *   **   ** **    *   *   *    **  *     *   * * ***   *   *

consensus_436#0      TCAGCTTCCCACCGACTTGAGTCACCTCGATTATCAATTGAACCTGTCCTTGGTGTTAAA 300
consensus_436#1      GTAATTT---AGTGATTCCAGGCTTCTCAAC---------AACTTTTCTTTATATTTCAG 210
                       *  **   *  ** *  ** *  *** *          *** * ** **    ** * 

consensus_436#0      TTGAGCTTGTCACGATCTGCAAAGTTAGGTTCTGCTGTGTCGTAAAACAATGACT 355
consensus_436#1      AGGCGGTTACAATGCTTCACGTGATCGTAGTCGAG-------------------- 245
                       * * **   * * *   *    *     **