cluster # 4365

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Schistosoma mansoni
cluster # 4365 cluster # 4365 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4365#0 length = 951 sequences # 2

consensus_4365#1 length = 560 sequences # 1

consensusID : consensus_4365#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 951
fasta sequence

                              [CTTTATTGGATATGTATGGACCTGGTCCTATTCTGAGAAGTTTAGCAAGTTGTTTATCCACTTCAATGTCAAATTCTTATCAAGTGAATTCTCCAACTTTAACATCAACAAATATTTCAAGTTTAGCTGATGCAGCACGTGGATTAGTTGGCCGTTTATCAGCATCATCTGGATTATTTAATACAACAAATAGTAATAATGTAGACATCGCTAAATCCAATTTAATTTCATCGACAATAGCTTCAGTATGTGCTACAAAAGCTGCACGAATTTTGGAGTATTTAACAGAAAGTTCAAGATTCCTTATACTTGCTCGATCTTCTAGTGATGGTTTACAAGGTCTATTGTCAGTCATTGAGTCTGCTTTAACTTCTTCATCTCCAACTACTAATACCAATCAACCTTCATCGAC-AACATGCCAGTGTCTAGCAACTTTGTTAGACAGTTTAGGCAATGCTTGCCAAGATCGTACTTTTCAAAAAACTATTCTACAAAGTCGTAAAGCTTTATTATTCGGATTATCTAATTGTCTTTCATATCATGTTCCACTGCTGAGTGATGCTAGTCATGCTCGTCTAATTGCTTCAATCTGTCGATTACTACATAATATTTATGTGGGACAATCGGATCAATCAATAGGGACTAATAACAATAGCTTCAATTTGCCAGATACTTCAAATAATGATTGTTCAACGTCTTGTTTAACATCAAGCAAATTAGTTAATTCATTACTGAATAGTATTGGTGCTATTTTAGATCAAATTGGTCATGGACCAGAATTAAGAGCTGTAGTTGTTGCTTTAGCTGGAAGATTATTACCTCTATGTCATGATACTAATCAACTTACATCTTGGTTTGGAGAGAATACAACTGAGTCAATTAGCGATTTAACACCACGAACTCGTTTACTTCTTGCAATTTTAGATAGCTGTTCATTAGATTCGTGTTCTA]

[+] EMBL CD194280             [CTTTATTGGATATGTATGGACCTGGTCCTATTCTGAGAAGTTTAGCAAGTTGTTTATCCACTTCAATGTCAAATTCTTATCAAGTGAATTCTCCAACTTTAACATCAACAAATATTTCAAGTTTAGCTGATGCAGCACGTGGATTAGTTGGCCGTTTATCAGCATCATCTGGATTATTTAATACAACAAATAGTAATAATGTAGACATCGCTAAATCCAATTTAATTTCATCGACAATAGCTTCAGTATGTGCTACAAAAGCTGCACGAATTTTGGAGTATTTAACAGAAAGTTCAAGATTCCTTATACTTGCTCGATCTTCTAGTGATGGTTTACAAGGTCTATTGTCAGTCATTGAGTCTGCTTTAACTTCTTCATCTCCAACTACTAATACCAATCAACCTTCATCGAC AACATGCCAGTGTCTAGCAACTTTGTTAGACAGTTTAGGCAATGCTTGCCAAGATCGTACTTTTCAAAAAACTATTCTACAAAGTCGTAAAGCTTTATTATTCGGATTATCTAATTGTCTTTCA                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD113413             [                                                                                                                                                                                                                                                                                                                                                                                                               AACCTTCATCGACAAACATGCCAGTGTCTAGCAACTTTGTTAGACAGTTTAGGCAATGCTTGCCAAGATCGTACTTTTCAAAAAACTATTCTACAAAGTCGTAAAGCTTTATTATTCGGATTATCTAATTGTCTTTCATATCATGTTCCACTGCTGAGTGATGCTAGTCATGCTCGTCTAATTGCTTCAATCTGTCGATTACTACATAATATTTATGTGGGACAATCGGATCAATCAATAGGGACTAATAACAATAGCTTCAATTTGCCAGATACTTCAAATAATGATTGTTCAACGTCTTGTTTAACATCAAGCAAATTAGTTAATTCATTACTGAATAGTATTGGTGCTATTTTAGATCAAATTGGTCATGGACCAGAATTAAGAGCTGTAGTTGTTGCTTTAGCTGGAAGATTATTACCTCTATGTCATGATACTAATCAACTTACATCTTGGTTTGGAGAGAATACAACTGAGTCAATTAGCGATTTAACACCACGAACTCGTTTACTTCTTGCAATTTTAGATAGCTGTTCATTAGATTCGTGTTCTA]




>consensus_4365#0
CTTTATTGGATATGTATGGACCTGGTCCTATTCTGAGAAGTTTAGCAAGTTGTTTATCCA
CTTCAATGTCAAATTCTTATCAAGTGAATTCTCCAACTTTAACATCAACAAATATTTCAA
GTTTAGCTGATGCAGCACGTGGATTAGTTGGCCGTTTATCAGCATCATCTGGATTATTTA
ATACAACAAATAGTAATAATGTAGACATCGCTAAATCCAATTTAATTTCATCGACAATAG
CTTCAGTATGTGCTACAAAAGCTGCACGAATTTTGGAGTATTTAACAGAAAGTTCAAGAT
TCCTTATACTTGCTCGATCTTCTAGTGATGGTTTACAAGGTCTATTGTCAGTCATTGAGT
CTGCTTTAACTTCTTCATCTCCAACTACTAATACCAATCAACCTTCATCGACAACATGCC
AGTGTCTAGCAACTTTGTTAGACAGTTTAGGCAATGCTTGCCAAGATCGTACTTTTCAAA
AAACTATTCTACAAAGTCGTAAAGCTTTATTATTCGGATTATCTAATTGTCTTTCATATC
ATGTTCCACTGCTGAGTGATGCTAGTCATGCTCGTCTAATTGCTTCAATCTGTCGATTAC
TACATAATATTTATGTGGGACAATCGGATCAATCAATAGGGACTAATAACAATAGCTTCA
ATTTGCCAGATACTTCAAATAATGATTGTTCAACGTCTTGTTTAACATCAAGCAAATTAG
TTAATTCATTACTGAATAGTATTGGTGCTATTTTAGATCAAATTGGTCATGGACCAGAAT
TAAGAGCTGTAGTTGTTGCTTTAGCTGGAAGATTATTACCTCTATGTCATGATACTAATC
AACTTACATCTTGGTTTGGAGAGAATACAACTGAGTCAATTAGCGATTTAACACCACGAA
CTCGTTTACTTCTTGCAATTTTAGATAGCTGTTCATTAGATTCGTGTTCTA

consensusID : consensus_4365#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence

                              [AGGCCAANAATTTGGCACGAGGTTCAATTTGCCAGATACTTCAAATAATGATTGTTCAACGTCTTGTTTAACATCAAGCAAATTAGTTAATTCATTACTGAATAGTATTGGTGCTATTTTAGATCAAATTGGTCATGGACCAGAATTAAGAGCTGTAGTTGTTGCTTTAGCTGGAAGATTATTACCTCTATGTCATGATACTAATCAACTTACATCTTGGTTTGGAGAGAATACAACTGAGTCAATTAGCGATTTAACACCACGAACTCGTTTACTTCTTGCAATTTTAGATAGCTGTTCATTAGATTCGTGTTCTAAACGTAATCCTGTCAATCCATCAACCGTAACTGATGAACAACAACAACAATCAAATGGAAATGTTTCACCGTCAAAAAATGAAACAAACAATATTACATCTCATTTAATTACTGGATGTATTCGTTGTTTAGCTTTTGGAACTAATCATTCAATTAATTTACGTTATGCAATTGGTGATGATAGACGACGTGTTCGACGTTTAGCACGTTTTATTCGTGCACGACTATCAGAATATACACTTC]

[+] EMBL CD080826             [AGGCCAANAATTTGGCACGAGGTTCAATTTGCCAGATACTTCAAATAATGATTGTTCAACGTCTTGTTTAACATCAAGCAAATTAGTTAATTCATTACTGAATAGTATTGGTGCTATTTTAGATCAAATTGGTCATGGACCAGAATTAAGAGCTGTAGTTGTTGCTTTAGCTGGAAGATTATTACCTCTATGTCATGATACTAATCAACTTACATCTTGGTTTGGAGAGAATACAACTGAGTCAATTAGCGATTTAACACCACGAACTCGTTTACTTCTTGCAATTTTAGATAGCTGTTCATTAGATTCGTGTTCTAAACGTAATCCTGTCAATCCATCAACCGTAACTGATGAACAACAACAACAATCAAATGGAAATGTTTCACCGTCAAAAAATGAAACAAACAATATTACATCTCATTTAATTACTGGATGTATTCGTTGTTTAGCTTTTGGAACTAATCATTCAATTAATTTACGTTATGCAATTGGTGATGATAGACGACGTGTTCGACGTTTAGCACGTTTTATTCGTGCACGACTATCAGAATATACACTTC]




>consensus_4365#1
AGGCCAANAATTTGGCACGAGGTTCAATTTGCCAGATACTTCAAATAATGATTGTTCAAC
GTCTTGTTTAACATCAAGCAAATTAGTTAATTCATTACTGAATAGTATTGGTGCTATTTT
AGATCAAATTGGTCATGGACCAGAATTAAGAGCTGTAGTTGTTGCTTTAGCTGGAAGATT
ATTACCTCTATGTCATGATACTAATCAACTTACATCTTGGTTTGGAGAGAATACAACTGA
GTCAATTAGCGATTTAACACCACGAACTCGTTTACTTCTTGCAATTTTAGATAGCTGTTC
ATTAGATTCGTGTTCTAAACGTAATCCTGTCAATCCATCAACCGTAACTGATGAACAACA
ACAACAATCAAATGGAAATGTTTCACCGTCAAAAAATGAAACAAACAATATTACATCTCA
TTTAATTACTGGATGTATTCGTTGTTTAGCTTTTGGAACTAATCATTCAATTAATTTACG
TTATGCAATTGGTGATGATAGACGACGTGTTCGACGTTTAGCACGTTTTATTCGTGCACG
ACTATCAGAATATACACTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4365#0      CTTTATTGGATATGTATGGACCTGGTCCTATTCTGAGAAGTTTAGCAAGTTGTTTATCCA 60
consensus_4365#1      ------------------------------------------------------------
                                                                                  

consensus_4365#0      CTTCAATGTCAAATTCTTATCAAGTGAATTCTCCAACTTTAACATCAACAAATATTTCAA 120
consensus_4365#1      ------------------------------------------------------------
                                                                                  

consensus_4365#0      GTTTAGCTGATGCAGCACGTGGATTAGTTGGCCGTTTATCAGCATCATCTGGATTATTTA 180
consensus_4365#1      ------------------------------------------------------------
                                                                                  

consensus_4365#0      ATACAACAAATAGTAATAATGTAGACATCGCTAAATCCAATTTAATTTCATCGACAATAG 240
consensus_4365#1      ------------------------------------------------------------
                                                                                  

consensus_4365#0      CTTCAGTATGTGCTACAAAAGCTGCACGAATTTTGGAGTATTTAACAGAAAGTTCAAGAT 300
consensus_4365#1      ------------------------------------------------------------
                                                                                  

consensus_4365#0      TCCTTATACTTGCTCGATCTTCTAGTGATGGTTTACAAGGTCTATTGTCAGTCATTGAGT 360
consensus_4365#1      ------------------------------------------------------------
                                                                                  

consensus_4365#0      CTGCTTTAACTTCTTCATCTCCAACTACTAATACCAATCAACCTTCATCGACAACATGCC 420
consensus_4365#1      ------------------------------------------------------------
                                                                                  

consensus_4365#0      AGTGTCTAGCAACTTTGTTAGACAGTTTAGGCAATGCTTGCCAAGATCGTACTTTTCAAA 480
consensus_4365#1      ------------------------------------------------------------
                                                                                  

consensus_4365#0      AAACTATTCTACAAAGTCGTAAAGCTTTATTATTCGGATTATCTAATTGTCTTTCATATC 540
consensus_4365#1      ------------------------------------------------------------
                                                                                  

consensus_4365#0      ATGTTCCACTGCTGAGTGATGCTAGTCATGCTCGTCTAATTGCTTCAATCTGTCGATTAC 600
consensus_4365#1      ------------------------------------------------------------
                                                                                  

consensus_4365#0      TACATAATATTTATGTGGGACAATCGGATCAATCAATAGGGACTAATAACAATAGCTTCA 660
consensus_4365#1      --------------------------------AGGCCAANAATT--TGGCACGAGGTTCA 26
                                                           *   * *  *  **  ** ****

consensus_4365#0      ATTTGCCAGATACTTCAAATAATGATTGTTCAACGTCTTGTTTAACATCAAGCAAATTAG 720
consensus_4365#1      ATTTGCCAGATACTTCAAATAATGATTGTTCAACGTCTTGTTTAACATCAAGCAAATTAG 86
                      ************************************************************

consensus_4365#0      TTAATTCATTACTGAATAGTATTGGTGCTATTTTAGATCAAATTGGTCATGGACCAGAAT 780
consensus_4365#1      TTAATTCATTACTGAATAGTATTGGTGCTATTTTAGATCAAATTGGTCATGGACCAGAAT 146
                      ************************************************************

consensus_4365#0      TAAGAGCTGTAGTTGTTGCTTTAGCTGGAAGATTATTACCTCTATGTCATGATACTAATC 840
consensus_4365#1      TAAGAGCTGTAGTTGTTGCTTTAGCTGGAAGATTATTACCTCTATGTCATGATACTAATC 206
                      ************************************************************

consensus_4365#0      AACTTACATCTTGGTTTGGAGAGAATACAACTGAGTCAATTAGCGATTTAACACCACGAA 900
consensus_4365#1      AACTTACATCTTGGTTTGGAGAGAATACAACTGAGTCAATTAGCGATTTAACACCACGAA 266
                      ************************************************************

consensus_4365#0      CTCGTTTACTTCTTGCAATTTTAGATAGCTGTTCATTAGATTCGTGTTCTA--------- 951
consensus_4365#1      CTCGTTTACTTCTTGCAATTTTAGATAGCTGTTCATTAGATTCGTGTTCTAAACGTAATC 326
                      ***************************************************         

consensus_4365#0      ------------------------------------------------------------
consensus_4365#1      CTGTCAATCCATCAACCGTAACTGATGAACAACAACAACAATCAAATGGAAATGTTTCAC 386
                                                                                  

consensus_4365#0      ------------------------------------------------------------
consensus_4365#1      CGTCAAAAAATGAAACAAACAATATTACATCTCATTTAATTACTGGATGTATTCGTTGTT 446
                                                                                  

consensus_4365#0      ------------------------------------------------------------
consensus_4365#1      TAGCTTTTGGAACTAATCATTCAATTAATTTACGTTATGCAATTGGTGATGATAGACGAC 506
                                                                                  

consensus_4365#0      ------------------------------------------------------
consensus_4365#1      GTGTTCGACGTTTAGCACGTTTTATTCGTGCACGACTATCAGAATATACACTTC 560