cluster # 4373

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Schistosoma mansoni
cluster # 4373 cluster # 4373 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4373#0 length = 716 sequences # 2

consensus_4373#1 length = 486 sequences # 1

consensusID : consensus_4373#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 716
fasta sequence

                              [AANAATATGGCACGAGGGTCTACTTATGGTGGGTGTTCACCTACCTCAGATTTGTATAATATAACAGAATGCTTGATCAGTGAATGTGTTCGTGACCATTTATTGATCAAACCTGTGATCGCTAAAAATGACCATAACGTTATCTATATCTCTCAAACAGTGATGCAGTGAATAACGCTGAATGTCTACACAATTCGAATGATAAACTGTCGGCATGGGGATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAAAAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAAAAATAAATCGTAGAAGGTTTGTTGAACAAAAATATAAAGAATGGATTGAAGAAAAACAAAAAGAAAGAATAAAAATAAAAAAACTTTTANAGATAGAGAAGAAAAANGAAGAATCAAAAAAACTACAAGAATTACTTGAACACACACAAAAATCCAAATTGAAATATAAAGAATGGTGTAAAAAGAAGACTGAAGAAGAGTATAAGAAAATCGAATATATAAGACAAGTTGAATTCAAAAACACCTAGCTAATCAAACTCGTAAAGAAGCTTCAACTGTAGCTTATGACCATTGGTTAANATCGACTGGTTGTAAGAAATNNCGCTCATACTATTCACATGGATATTCTGATGGAAAACTATAGACTATTACGATCGACAGCCCATCTTTTC]

[+] EMBL CD080792             [AANAATATGGCACGAGGGTCTACTTATGGTGGGTGTTCACCTACCTCAGATTTGTATAATATAACAGAATGCTTGATCAGTGAATGTGTTCGTGACCATTTATTGATCAAACCTGTGATCGCTAAAAATGACCATAACGTTATCTATATCTCTCAAACAGTGATGCAGTGAATAACGCTGAATGTCTACACAATTCGAATGATAAACTGTCGGCATGGGGATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAAAAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAAAAATAAATCGTAGAAGGTTTGTTGAACAAAAATATAAAGAATGGATTGAAGAAAAACAAAAAGAAAGAATAAAAATAAAAAAACTTTTANAGATAGAGAAGAAAAANGAAGAATCAAAAAAACTACAAGAATTACTTGAACACACACAAAAATCCAAATTGAAATATAAAGAATGGTGTAAAAAGAAGACTGAAGAAGAGTATAAGAAAATCGAATATATAAGACAAGTTGAATTCAAAAACACCTAGCTAATCAAACTCGTAAAGAAGCTTCAACTGTAGCTTATGACCATTGGTTAANATCGACTGGTTGTAAGAAATNNCGCTCATACTATTCACATGGATATTCTGATGGAAAACTATAGACTATTACGATCGACAGCCCATCTTTTC]
[+] EMBL CD112281             [                                                                                                                                                                                                                           GATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAAAAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAAAAATAAATCGTAGAAGGTTTGTTGAACAAAAATATAAAGAATGGATAGAAGAAAAACAAAAAGAAAGAATAAAAATAAAAAAACTTTTAGAGATAGAGAAGAAAAATGAAGAATCAAAAAAACTACAAGAATTACTTGAACACACACAAAAATCCAAATTGAAATATAAAGAATGGTGTAAAAAGAAGACTGAAGAAGAGTATAAGAAAATCGAATATATAAGACAAGTTGAAT                                                                                                                                                              ]




>consensus_4373#0
AANAATATGGCACGAGGGTCTACTTATGGTGGGTGTTCACCTACCTCAGATTTGTATAAT
ATAACAGAATGCTTGATCAGTGAATGTGTTCGTGACCATTTATTGATCAAACCTGTGATC
GCTAAAAATGACCATAACGTTATCTATATCTCTCAAACAGTGATGCAGTGAATAACGCTG
AATGTCTACACAATTCGAATGATAAACTGTCGGCATGGGGATGTTGGTTGTTAGAGAAAG
AAAAACAGAGACGAGAACAAAGAAAACAGTCAAAAAAGAAACAGATTGAAGAAATTCAAA
AGAGGAATCAGTTATTGGTGCAAAAAATAAATCGTAGAAGGTTTGTTGAACAAAAATATA
AAGAATGGATTGAAGAAAAACAAAAAGAAAGAATAAAAATAAAAAAACTTTTANAGATAG
AGAAGAAAAANGAAGAATCAAAAAAACTACAAGAATTACTTGAACACACACAAAAATCCA
AATTGAAATATAAAGAATGGTGTAAAAAGAAGACTGAAGAAGAGTATAAGAAAATCGAAT
ATATAAGACAAGTTGAATTCAAAAACACCTAGCTAATCAAACTCGTAAAGAAGCTTCAAC
TGTAGCTTATGACCATTGGTTAANATCGACTGGTTGTAAGAAATNNCGCTCATACTATTC
ACATGGATATTCTGATGGAAAACTATAGACTATTACGATCGACAGCCCATCTTTTC

consensusID : consensus_4373#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [CTCGTATAACGAAATCCGAAAAATATAAGACCAGAAACATAAGGAAACAAAGCAAAACTGTGTTAGACACAGATTATCATCCTGTTAATTTAAGAAGAAAAGTATCAACCAAACAATTTAATACTAGTAATGGACAAACAGATAATCGATCATCATCCAAAGTTTCACTTCATGGTGGGTGTTCACCTACCTCAGATTTGTATAATATAACAGAATGCTTGATCAGTGAATGTGTTCGTGACCATTTATTGATCAAACCTGTGATCGCTAAAAATGACCATAACGTAACTATAAGCTCAAACAGTGATGCAGTGAATAACGCTGAATGTCTACACAATTCGAATGATAAACTGTCGGCATGGGGATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAAAAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAAATAAATCGTAGAAGTTCC]

[-] EMBL CD128452             [CTCGTATAACGAAATCCGAAAAATATAAGACCAGAAACATAAGGAAACAAAGCAAAACTGTGTTAGACACAGATTATCATCCTGTTAATTTAAGAAGAAAAGTATCAACCAAACAATTTAATACTAGTAATGGACAAACAGATAATCGATCATCATCCAAAGTTTCACTTCATGGTGGGTGTTCACCTACCTCAGATTTGTATAATATAACAGAATGCTTGATCAGTGAATGTGTTCGTGACCATTTATTGATCAAACCTGTGATCGCTAAAAATGACCATAACGTAACTATAAGCTCAAACAGTGATGCAGTGAATAACGCTGAATGTCTACACAATTCGAATGATAAACTGTCGGCATGGGGATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAAAAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAAATAAATCGTAGAAGTTCC]




>consensus_4373#1
CTCGTATAACGAAATCCGAAAAATATAAGACCAGAAACATAAGGAAACAAAGCAAAACTG
TGTTAGACACAGATTATCATCCTGTTAATTTAAGAAGAAAAGTATCAACCAAACAATTTA
ATACTAGTAATGGACAAACAGATAATCGATCATCATCCAAAGTTTCACTTCATGGTGGGT
GTTCACCTACCTCAGATTTGTATAATATAACAGAATGCTTGATCAGTGAATGTGTTCGTG
ACCATTTATTGATCAAACCTGTGATCGCTAAAAATGACCATAACGTAACTATAAGCTCAA
ACAGTGATGCAGTGAATAACGCTGAATGTCTACACAATTCGAATGATAAACTGTCGGCAT
GGGGATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAAAA
AGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAAATAAATCGTAGA
AGTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4373#0      ------------------------------------------------------------
consensus_4373#1      CTCGTATAACGAAATCCGAAAAATATAAGACCAGAAACATAAGGAAACAAAGCAAAACTG 60
                                                                                  

consensus_4373#0      ------------------------------------------------------------
consensus_4373#1      TGTTAGACACAGATTATCATCCTGTTAATTTAAGAAGAAAAGTATCAACCAAACAATTTA 120
                                                                                  

consensus_4373#0      ------------------------AANAAT-ATGGCACGAGGGTCTACTT-ATGGTGGGT 34
consensus_4373#1      ATACTAGTAATGGACAAACAGATAATCGATCATCATCCAAAGTTTCACTTCATGGTGGGT 180
                                              *   ** **    * * * *  **** *********

consensus_4373#0      GTTCACCTACCTCAGATTTGTATAATATAACAGAATGCTTGATCAGTGAATGTGTTCGTG 94
consensus_4373#1      GTTCACCTACCTCAGATTTGTATAATATAACAGAATGCTTGATCAGTGAATGTGTTCGTG 240
                      ************************************************************

consensus_4373#0      ACCATTTATTGATCAAACCTGTGATCGCTAAAAATGACCATAACGTTATCTATATCTCTC 154
consensus_4373#1      ACCATTTATTGATCAAACCTGTGATCGCTAAAAATGACCATAACGTAA-CTATAAG-CTC 298
                      ********************************************** * *****   ***

consensus_4373#0      AAACAGTGATGCAGTGAATAACGCTGAATGTCTACACAATTCGAATGATAAACTGTCGGC 214
consensus_4373#1      AAACAGTGATGCAGTGAATAACGCTGAATGTCTACACAATTCGAATGATAAACTGTCGGC 358
                      ************************************************************

consensus_4373#0      ATGGGGATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAA 274
consensus_4373#1      ATGGGGATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAA 418
                      ************************************************************

consensus_4373#0      AAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAAAAATAAATCG 334
consensus_4373#1      AAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAA--ATAAATCG 476
                      **************************************************  ********

consensus_4373#0      TAGAAGGTTTGTTGAACAAAAATATAAAGAATGGATTGAAGAAAAACAAAAAGAAAGAAT 394
consensus_4373#1      TAGAAGTTCC-------------------------------------------------- 486
                      ****** *                                                    

consensus_4373#0      AAAAATAAAAAAACTTTTANAGATAGAGAAGAAAAANGAAGAATCAAAAAAACTACAAGA 454
consensus_4373#1      ------------------------------------------------------------
                                                                                  

consensus_4373#0      ATTACTTGAACACACACAAAAATCCAAATTGAAATATAAAGAATGGTGTAAAAAGAAGAC 514
consensus_4373#1      ------------------------------------------------------------
                                                                                  

consensus_4373#0      TGAAGAAGAGTATAAGAAAATCGAATATATAAGACAAGTTGAATTCAAAAACACCTAGCT 574
consensus_4373#1      ------------------------------------------------------------
                                                                                  

consensus_4373#0      AATCAAACTCGTAAAGAAGCTTCAACTGTAGCTTATGACCATTGGTTAANATCGACTGGT 634
consensus_4373#1      ------------------------------------------------------------
                                                                                  

consensus_4373#0      TGTAAGAAATNNCGCTCATACTATTCACATGGATATTCTGATGGAAAACTATAGACTATT 694
consensus_4373#1      ------------------------------------------------------------
                                                                                  

consensus_4373#0      ACGATCGACAGCCCATCTTTTC 716
consensus_4373#1      ----------------------