These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 716 fasta sequence [AANAATATGGCACGAGGGTCTACTTATGGTGGGTGTTCACCTACCTCAGATTTGTATAATATAACAGAATGCTTGATCAGTGAATGTGTTCGTGACCATTTATTGATCAAACCTGTGATCGCTAAAAATGACCATAACGTTATCTATATCTCTCAAACAGTGATGCAGTGAATAACGCTGAATGTCTACACAATTCGAATGATAAACTGTCGGCATGGGGATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAAAAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAAAAATAAATCGTAGAAGGTTTGTTGAACAAAAATATAAAGAATGGATTGAAGAAAAACAAAAAGAAAGAATAAAAATAAAAAAACTTTTANAGATAGAGAAGAAAAANGAAGAATCAAAAAAACTACAAGAATTACTTGAACACACACAAAAATCCAAATTGAAATATAAAGAATGGTGTAAAAAGAAGACTGAAGAAGAGTATAAGAAAATCGAATATATAAGACAAGTTGAATTCAAAAACACCTAGCTAATCAAACTCGTAAAGAAGCTTCAACTGTAGCTTATGACCATTGGTTAANATCGACTGGTTGTAAGAAATNNCGCTCATACTATTCACATGGATATTCTGATGGAAAACTATAGACTATTACGATCGACAGCCCATCTTTTC] [+] EMBL CD080792 [AANAATATGGCACGAGGGTCTACTTATGGTGGGTGTTCACCTACCTCAGATTTGTATAATATAACAGAATGCTTGATCAGTGAATGTGTTCGTGACCATTTATTGATCAAACCTGTGATCGCTAAAAATGACCATAACGTTATCTATATCTCTCAAACAGTGATGCAGTGAATAACGCTGAATGTCTACACAATTCGAATGATAAACTGTCGGCATGGGGATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAAAAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAAAAATAAATCGTAGAAGGTTTGTTGAACAAAAATATAAAGAATGGATTGAAGAAAAACAAAAAGAAAGAATAAAAATAAAAAAACTTTTANAGATAGAGAAGAAAAANGAAGAATCAAAAAAACTACAAGAATTACTTGAACACACACAAAAATCCAAATTGAAATATAAAGAATGGTGTAAAAAGAAGACTGAAGAAGAGTATAAGAAAATCGAATATATAAGACAAGTTGAATTCAAAAACACCTAGCTAATCAAACTCGTAAAGAAGCTTCAACTGTAGCTTATGACCATTGGTTAANATCGACTGGTTGTAAGAAATNNCGCTCATACTATTCACATGGATATTCTGATGGAAAACTATAGACTATTACGATCGACAGCCCATCTTTTC] [+] EMBL CD112281 [ GATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAAAAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAAAAATAAATCGTAGAAGGTTTGTTGAACAAAAATATAAAGAATGGATAGAAGAAAAACAAAAAGAAAGAATAAAAATAAAAAAACTTTTAGAGATAGAGAAGAAAAATGAAGAATCAAAAAAACTACAAGAATTACTTGAACACACACAAAAATCCAAATTGAAATATAAAGAATGGTGTAAAAAGAAGACTGAAGAAGAGTATAAGAAAATCGAATATATAAGACAAGTTGAAT ] consensusID : consensus_4373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [CTCGTATAACGAAATCCGAAAAATATAAGACCAGAAACATAAGGAAACAAAGCAAAACTGTGTTAGACACAGATTATCATCCTGTTAATTTAAGAAGAAAAGTATCAACCAAACAATTTAATACTAGTAATGGACAAACAGATAATCGATCATCATCCAAAGTTTCACTTCATGGTGGGTGTTCACCTACCTCAGATTTGTATAATATAACAGAATGCTTGATCAGTGAATGTGTTCGTGACCATTTATTGATCAAACCTGTGATCGCTAAAAATGACCATAACGTAACTATAAGCTCAAACAGTGATGCAGTGAATAACGCTGAATGTCTACACAATTCGAATGATAAACTGTCGGCATGGGGATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAAAAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAAATAAATCGTAGAAGTTCC] [-] EMBL CD128452 [CTCGTATAACGAAATCCGAAAAATATAAGACCAGAAACATAAGGAAACAAAGCAAAACTGTGTTAGACACAGATTATCATCCTGTTAATTTAAGAAGAAAAGTATCAACCAAACAATTTAATACTAGTAATGGACAAACAGATAATCGATCATCATCCAAAGTTTCACTTCATGGTGGGTGTTCACCTACCTCAGATTTGTATAATATAACAGAATGCTTGATCAGTGAATGTGTTCGTGACCATTTATTGATCAAACCTGTGATCGCTAAAAATGACCATAACGTAACTATAAGCTCAAACAGTGATGCAGTGAATAACGCTGAATGTCTACACAATTCGAATGATAAACTGTCGGCATGGGGATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAAAAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAAATAAATCGTAGAAGTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4373#0 ------------------------------------------------------------ consensus_4373#1 CTCGTATAACGAAATCCGAAAAATATAAGACCAGAAACATAAGGAAACAAAGCAAAACTG 60 consensus_4373#0 ------------------------------------------------------------ consensus_4373#1 TGTTAGACACAGATTATCATCCTGTTAATTTAAGAAGAAAAGTATCAACCAAACAATTTA 120 consensus_4373#0 ------------------------AANAAT-ATGGCACGAGGGTCTACTT-ATGGTGGGT 34 consensus_4373#1 ATACTAGTAATGGACAAACAGATAATCGATCATCATCCAAAGTTTCACTTCATGGTGGGT 180 * ** ** * * * * **** ********* consensus_4373#0 GTTCACCTACCTCAGATTTGTATAATATAACAGAATGCTTGATCAGTGAATGTGTTCGTG 94 consensus_4373#1 GTTCACCTACCTCAGATTTGTATAATATAACAGAATGCTTGATCAGTGAATGTGTTCGTG 240 ************************************************************ consensus_4373#0 ACCATTTATTGATCAAACCTGTGATCGCTAAAAATGACCATAACGTTATCTATATCTCTC 154 consensus_4373#1 ACCATTTATTGATCAAACCTGTGATCGCTAAAAATGACCATAACGTAA-CTATAAG-CTC 298 ********************************************** * ***** *** consensus_4373#0 AAACAGTGATGCAGTGAATAACGCTGAATGTCTACACAATTCGAATGATAAACTGTCGGC 214 consensus_4373#1 AAACAGTGATGCAGTGAATAACGCTGAATGTCTACACAATTCGAATGATAAACTGTCGGC 358 ************************************************************ consensus_4373#0 ATGGGGATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAA 274 consensus_4373#1 ATGGGGATGTTGGTTGTTAGAGAAAGAAAAACAGAGACGAGAACAAAGAAAACAGTCAAA 418 ************************************************************ consensus_4373#0 AAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAAAAATAAATCG 334 consensus_4373#1 AAAGAAACAGATTGAAGAAATTCAAAAGAGGAATCAGTTATTGGTGCAAA--ATAAATCG 476 ************************************************** ******** consensus_4373#0 TAGAAGGTTTGTTGAACAAAAATATAAAGAATGGATTGAAGAAAAACAAAAAGAAAGAAT 394 consensus_4373#1 TAGAAGTTCC-------------------------------------------------- 486 ****** * consensus_4373#0 AAAAATAAAAAAACTTTTANAGATAGAGAAGAAAAANGAAGAATCAAAAAAACTACAAGA 454 consensus_4373#1 ------------------------------------------------------------ consensus_4373#0 ATTACTTGAACACACACAAAAATCCAAATTGAAATATAAAGAATGGTGTAAAAAGAAGAC 514 consensus_4373#1 ------------------------------------------------------------ consensus_4373#0 TGAAGAAGAGTATAAGAAAATCGAATATATAAGACAAGTTGAATTCAAAAACACCTAGCT 574 consensus_4373#1 ------------------------------------------------------------ consensus_4373#0 AATCAAACTCGTAAAGAAGCTTCAACTGTAGCTTATGACCATTGGTTAANATCGACTGGT 634 consensus_4373#1 ------------------------------------------------------------ consensus_4373#0 TGTAAGAAATNNCGCTCATACTATTCACATGGATATTCTGATGGAAAACTATAGACTATT 694 consensus_4373#1 ------------------------------------------------------------ consensus_4373#0 ACGATCGACAGCCCATCTTTTC 716 consensus_4373#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||