These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 586 fasta sequence [TTATGATGAGAGGAACACGAATACGATTAGGTCAGTTATTTAACAACTATACAATAGGAAATAGGCATATTACATTTGTCCATAAACAGACCTCAGATTTGCCATTCATAATTCACCAGGGGATATAACACCTCCCCTTTTTGAGAAATCCGGATTTTAAATTTCTCGAATTCCTCCTCCCCCACGAAAGACTGTTGGATCCTCATATAGCCAAGTTACTATTAATGTGACATATAAAACATGTTTGTCATATTTAACAGAGAATCCATTAGAACTGACCAGATCATGAGGATCGACGACAATTGATTTGAGGTCACCAGCGTCTAATTCTTCTGGAACAATTTCCCTGAATTTATTCGGAACCTCATTAGTAGATAATGGATCATAATCAGTTTCTATGAAAAACGTATTGGATTCTTGATTATCATTTAATGCATCTGACATTTTTCTCCCACTTTTATAAGAGAGTTCAACAGGAACATATGAATCATCAAAATAATCTAAATCTGGCAGAACAATTAAAGAATCTTGATCATTAGATTCGTTAGAAACATTTTTCGCATTATTACTAGTTTCATTTGGCGCC] [+] EMBL CD171059 [TTATGATGAGAGGAACACGAATACGATTAGGTCAGTTATTTAACAACTATACAATAGGAAATAGGCATATTACATTTGTCCATAAACAGACCTCAGATTTGCCATTCATAATTCACCAGGGGATATAACACCTCCCCTTTTTGAGAAATCCGGATTTTAAATTTCTCGAATTCCTCCTCCCCCACGAAAGACTGTTGGATCCTCATATAGCCAAGTTACTATTAATGTGACATATAAAACATGTTTGTCATATTTAACAGAGAATCCATTAGAACTGACCAGATCATGAGGATCGACGACAATTGATTTGAGGTCACCAGCGTCTAATTCTTCTGGAACAATTTCCCTGAATTTATTCGGAACCTCATTAGTAGATAATGGATCATAATCAGTTTCTATGAAAAACGTATTGGATTCTTGATTATCATTTAATGCATCTGACATTTTTCTCCCACTTTTATAAG ] [+] EMBL CD071514 [ TTGGATCCTCATATAGCCAAGTTACTATTAATGTGACATATAAAACATGTTTGTCATATTTAACAGAGAATCCATTAGAACTGACCAGATCATGAGGATCGACGACAATTGATTTGAGGTCACCAGCGTCTAATTCTTCTGGAACAATTTCCCTGAATTTATTCGGAACCTCATTAGTAGATAATGAATCATAATCAGTTTCTATGANAAACGTATTGGATTCTTGATTATCATTTAATGCATCTGACATTTTTCTCCCACTTTTATAAGAGAGTTCAACAGGAACATATGAATCATCAAAATAATCTAAATCTGGCAGAACAATTAAAGAATCTTGATCATTAGATTCGTTAGAAACATTTTTCGCATTATTACTAGTTTCATTTGGCGCC] consensusID : consensus_4374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [TCTTCGGGACCAATTTCCGGGAATTTATTCGGAACCTCATTAGTAGATAATGAATCATAATCAGTTTCTATGAAAAACGTATTGGATTCTCGATTATCATTTAATACATCCGATATTTTTCTCCCATTTTCATAAGAGATTTGAATAGGAACATATGAATCAGCAAAATAATCGGGATCTGGCAGAACAATTAGATAATCTTGATCATTAGATTCATTAGAAAAATTTTTTGCATCATGACTGGTTTGATTTGGCGCCACTGTATTCACTATACTGCTCGGTTTGTTCCCCGTTTCTTCGTGGGCGGGTACTGCAGCAATTTTATGGGCGCTTAATAAGACATTGTCTTTCTGTGAACTGGACGATTCATTGTTCGCACGTTTTGTTTCAG] [-] EMBL CD195528 [TCTTCGGGACCAATTTCCGGGAATTTATTCGGAACCTCATTAGTAGATAATGAATCATAATCAGTTTCTATGAAAAACGTATTGGATTCTCGATTATCATTTAATACATCCGATATTTTTCTCCCATTTTCATAAGAGATTTGAATAGGAACATATGAATCAGCAAAATAATCGGGATCTGGCAGAACAATTAGATAATCTTGATCATTAGATTCATTAGAAAAATTTTTTGCATCATGACTGGTTTGATTTGGCGCCACTGTATTCACTATACTGCTCGGTTTGTTCCCCGTTTCTTCGTGGGCGGGTACTGCAGCAATTTTATGGGCGCTTAATAAGACATTGTCTTTCTGTGAACTGGACGATTCATTGTTCGCACGTTTTGTTTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4374#0 TTATGATGAGAGGAACACGAATACGATTAGGTCAGTTATTTAACAACTATACAATAGGAA 60 consensus_4374#1 ------------------------------------------------------------ consensus_4374#0 ATAGGCATATTACATTTGTCCATAAACAGACCTCAGATTTGCCATTCATAATTCACCAGG 120 consensus_4374#1 ------------------------------------------------------------ consensus_4374#0 GGATATAACACCTCCCCTTTTTGAGAAATCCGGATTTTAAATTTCTCGAATTCCTCCTCC 180 consensus_4374#1 ------------------------------------------------------------ consensus_4374#0 CCCACGAAAGACTGTTGGATCCTCATATAGCCAAGTTACTATTAATGTGACATATAAAAC 240 consensus_4374#1 ------------------------------------------------------------ consensus_4374#0 ATGTTTGTCATATTTAACAGAGAATCCATTAGAACTGACCAGATCATGAGGATCGACGAC 300 consensus_4374#1 ------------------------------------------------------------ consensus_4374#0 AATTGATTTGAGGTCACCAGCGTCTAATTCTTCTGGAACAATTTCCCTGAATTTATTCGG 360 consensus_4374#1 ----------------------------TCTTCGGGACCAATTTCCGGGAATTTATTCGG 32 ***** *** ******** ************ consensus_4374#0 AACCTCATTAGTAGATAATGGATCATAATCAGTTTCTATGAAAAACGTATTGGATTCTTG 420 consensus_4374#1 AACCTCATTAGTAGATAATGAATCATAATCAGTTTCTATGAAAAACGTATTGGATTCTCG 92 ******************** ************************************* * consensus_4374#0 ATTATCATTTAATGCATCTGACATTTTTCTCCCACTTTTATAAGAGAGTTCAACAGGAAC 480 consensus_4374#1 ATTATCATTTAATACATCCGATATTTTTCTCCCATTTTCATAAGAGATTTGAATAGGAAC 152 ************* **** ** ************ *** ******** ** ** ****** consensus_4374#0 ATATGAATCATCAAAATAATCTAAATCTGGCAGAACAATTAAAGAATCTTGATCATTAGA 540 consensus_4374#1 ATATGAATCAGCAAAATAATCGGGATCTGGCAGAACAATTAGATAATCTTGATCATTAGA 212 ********** ********** ***************** * **************** consensus_4374#0 TTCGTTAGAAACATTTTTCGCATTATTACTAGTTTCATTTGGCGCC-------------- 586 consensus_4374#1 TTCATTAGAAAAATTTTTTGCATCATGACTGGTTTGATTTGGCGCCACTGTATTCACTAT 272 *** ******* ****** **** ** *** **** ********** consensus_4374#0 ------------------------------------------------------------ consensus_4374#1 ACTGCTCGGTTTGTTCCCCGTTTCTTCGTGGGCGGGTACTGCAGCAATTTTATGGGCGCT 332 consensus_4374#0 ----------------------------------------------------------- consensus_4374#1 TAATAAGACATTGTCTTTCTGTGAACTGGACGATTCATTGTTCGCACGTTTTGTTTCAG 391 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||