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Schistosoma mansoni
cluster # 4377 cluster # 4377       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4377#0 length = 468 sequences # 1  
consensus_4377#1 length = 328 sequences # 1  
consensus_4377#2 length = 206 sequences # 1  

consensusID : consensus_4377#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence
                              [TTTCCTCTTGATTAAGTACTTCTATGAAGTACACACATATCAAACTTATTTTTCAAACTTTTTTGGCGAAGAACTTATCATCGTCAGTTTATTCAAAAAAACTTTAAAGCAAAGTAATCTACTCAGTTTTAATTTAATGTAGAGGCCATTTAGCATAAAATTCCCTTTTAACATTTGCTTATTGTGTATAATATGTCAAAAAGAACTGACCAGTATATGTTGTTGTATACATGTATGTAAAACATGTTTATTTATGCTCACTTACTTACTGGTTAGCGTTTTCCTAGCGGGTTGGTTTTCTAAGGGATGGGGTCGCTAACCCCATGCCTAACCCTCCTCCCTTATCTGGGCTTAGGACCGGCAGTAGCCCCCGGAGGAGCTACAGGCAGATTTTCATCTATCCTACTGTGTATTGTTTTAATAGTAGTTGTATTTTAATGCACAAATAAAGTTATTTTAACTTTGAAT]

[+] EMBL CD185276             [TTTCCTCTTGATTAAGTACTTCTATGAAGTACACACATATCAAACTTATTTTTCAAACTTTTTTGGCGAAGAACTTATCATCGTCAGTTTATTCAAAAAAACTTTAAAGCAAAGTAATCTACTCAGTTTTAATTTAATGTAGAGGCCATTTAGCATAAAATTCCCTTTTAACATTTGCTTATTGTGTATAATATGTCAAAAAGAACTGACCAGTATATGTTGTTGTATACATGTATGTAAAACATGTTTATTTATGCTCACTTACTTACTGGTTAGCGTTTTCCTAGCGGGTTGGTTTTCTAAGGGATGGGGTCGCTAACCCCATGCCTAACCCTCCTCCCTTATCTGGGCTTAGGACCGGCAGTAGCCCCCGGAGGAGCTACAGGCAGATTTTCATCTATCCTACTGTGTATTGTTTTAATAGTAGTTGTATTTTAATGCACAAATAAAGTTATTTTAACTTTGAAT]


>consensus_4377#0 TTTCCTCTTGATTAAGTACTTCTATGAAGTACACACATATCAAACTTATTTTTCAAACTT TTTTGGCGAAGAACTTATCATCGTCAGTTTATTCAAAAAAACTTTAAAGCAAAGTAATCT ACTCAGTTTTAATTTAATGTAGAGGCCATTTAGCATAAAATTCCCTTTTAACATTTGCTT ATTGTGTATAATATGTCAAAAAGAACTGACCAGTATATGTTGTTGTATACATGTATGTAA AACATGTTTATTTATGCTCACTTACTTACTGGTTAGCGTTTTCCTAGCGGGTTGGTTTTC TAAGGGATGGGGTCGCTAACCCCATGCCTAACCCTCCTCCCTTATCTGGGCTTAGGACCG GCAGTAGCCCCCGGAGGAGCTACAGGCAGATTTTCATCTATCCTACTGTGTATTGTTTTA ATAGTAGTTGTATTTTAATGCACAAATAAAGTTATTTTAACTTTGAAT



consensusID : consensus_4377#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence
                              [AAAGAAAAATGAATCTATCTTGTTCACTTCTGAAATAGTGGGNCCCATCTACTTTTTCATTTATCAAGTGGCCGGGCAATAAACCGAACACTTTTTTCCCGGAAAAAAAGTATCTATGGATTTAAAAACTCGTGGATGAATTACAATCGACTAATAACTAATGAAAAGAGTCAATTTCAAGAGAAGTTAGATGAAATGAACAACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTATTACTAGAGTATTTAAATTACAGATTATCGATGAAATANATACAGAATGTGTGAAGANTATGGGAAACGTTGAAGATA]

[+] EMBL CD153476             [AAAGAAAAATGAATCTATCTTGTTCACTTCTGAAATAGTGGGNCCCATCTACTTTTTCATTTATCAAGTGGCCGGGCAATAAACCGAACACTTTTTTCCCGGAAAAAAAGTATCTATGGATTTAAAAACTCGTGGATGAATTACAATCGACTAATAACTAATGAAAAGAGTCAATTTCAAGAGAAGTTAGATGAAATGAACAACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTATTACTAGAGTATTTAAATTACAGATTATCGATGAAATANATACAGAATGTGTGAAGANTATGGGAAACGTTGAAGATA]


>consensus_4377#1 AAAGAAAAATGAATCTATCTTGTTCACTTCTGAAATAGTGGGNCCCATCTACTTTTTCAT TTATCAAGTGGCCGGGCAATAAACCGAACACTTTTTTCCCGGAAAAAAAGTATCTATGGA TTTAAAAACTCGTGGATGAATTACAATCGACTAATAACTAATGAAAAGAGTCAATTTCAA GAGAAGTTAGATGAAATGAACAACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTAT TTCAATTGTATTACTAGAGTATTTAAATTACAGATTATCGATGAAATANATACAGAATGT GTGAAGANTATGGGAAACGTTGAAGATA



consensusID : consensus_4377#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence
                              [CAATGTATACTTCAAAGTAGAATATGTAATTGTTTTGTCAAACAAAAAACAACAGTTGATAGCAACGCTATCAATAATAGTAAACTTTTAACATTACTTAAGTAAAGTTAGATAGTAACTAGCATAAGAAATTAAGACTAGCATTTCATACTATGCCCCCAAATCCCCTGGTACGGCCGAGAGTGAGGAGAGTCCGCTCTCCCTCT]

[+] EMBL CD064670             [CAATGTATACTTCAAAGTAGAATATGTAATTGTTTTGTCAAACAAAAAACAACAGTTGATAGCAACGCTATCAATAATAGTAAACTTTTAACATTACTTAAGTAAAGTTAGATAGTAACTAGCATAAGAAATTAAGACTAGCATTTCATACTATGCCCCCAAATCCCCTGGTACGGCCGAGAGTGAGGAGAGTCCGCTCTCCCTCT]


>consensus_4377#2 CAATGTATACTTCAAAGTAGAATATGTAATTGTTTTGTCAAACAAAAAACAACAGTTGAT AGCAACGCTATCAATAATAGTAAACTTTTAACATTACTTAAGTAAAGTTAGATAGTAACT AGCATAAGAAATTAAGACTAGCATTTCATACTATGCCCCCAAATCCCCTGGTACGGCCGA GAGTGAGGAGAGTCCGCTCTCCCTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4377#0      TTTCCTCTTGATTAAGTACTTCTATGAAGTACACACATATCAAACTTATTTTTCAAACTT 60
consensus_4377#2      ------------------------------------------------------------
consensus_4377#1      -------------------------------AAAGAAAAATGAATCTATCTTGTTCACTT 29
                                                                                  

consensus_4377#0      TTTTGGCGAAGAACTTATCATCGTCAGTTTATTCAAAAAAACTTTAAAGCAAAGTAATCT 120
consensus_4377#2      --------------------------------CAATGTATACTTCAAAGTAGAATATGTA 28
consensus_4377#1      CTGAAATAGTGGGNC--CCATCTACTTTTTCATTTATCAAGTGGCCGGGCAATAAACCGA 87
                                                            *         * *    *    

consensus_4377#0      ACTCAGTTTTAATTTAATGTAGAGGCCATTTAGCATAAAATTCCCTTTTAACATTTGCTT 180
consensus_4377#2      ATT--GTTTTGTCAAACAAAAAACAACAGTTGATAGCAA---CGCTATCAATAATAGTAA 83
consensus_4377#1      ACACTTTTTTCCCGGAAAAAAAGTATCTATGGATTTAAAAA-CTCGTGGATGAATTACAA 146
                      *     ****     *    *     *  *       **   * *    *  * *     

consensus_4377#0      ATTGTGTATAATATGTCAAAAAGAACTGACCAGTATATGTTGTTGTATACATGTATGTAA 240
consensus_4377#2      ACTTTTAACATTAC-TTAAGTAAAGTTAGATAGTA---ACTAGCATAAGAAATTAAGACT 139
consensus_4377#1      TCGACTAATAAC-TAATGAAAAGAGTCAATTTCAAGA-GAAGTTAGATGAA---ATGAAC 201
                             * *        *  * *          *           *   *   * *   

consensus_4377#0      AACATGTTTATTTATGCTCACTTACTTACTGGTTAG--CGTTTTCCTAGCGGGTTGGTTT 298
consensus_4377#2      AGCATTTCATACTATGCCCCCAAATCCCCTGGTACGGCCGAGAGTGAGGAGAGTCCGCTC 199
consensus_4377#1      AACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTATTACTAGAGTA 261
                      * **         ***       *     **    *                 *    * 

consensus_4377#0      TCTAAGGGATGGGGTCGCTAACCCCATGCCTAACCCTCCTCCCTTATCTGGGCTTAGGAC 358
consensus_4377#2      TCCCTCT----------------------------------------------------- 206
consensus_4377#1      TTTAAATTACAGA-TTATCGATGAAATANATACAGAATGTGTGAAGANTATGGGAAACGT 320
                      *                                                           

consensus_4377#0      CGGCAGTAGCCCCCGGAGGAGCTACAGGCAGATTTTCATCTATCCTACTGTGTATTGTTT 418
consensus_4377#2      ------------------------------------------------------------
consensus_4377#1      TGAAGATA---------------------------------------------------- 328
                                                                                  

consensus_4377#0      TAATAGTAGTTGTATTTTAATGCACAAATAAAGTTATTTTAACTTTGAAT 468
consensus_4377#2      --------------------------------------------------
consensus_4377#1      --------------------------------------------------
                                                                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)