These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [TTTCCTCTTGATTAAGTACTTCTATGAAGTACACACATATCAAACTTATTTTTCAAACTTTTTTGGCGAAGAACTTATCATCGTCAGTTTATTCAAAAAAACTTTAAAGCAAAGTAATCTACTCAGTTTTAATTTAATGTAGAGGCCATTTAGCATAAAATTCCCTTTTAACATTTGCTTATTGTGTATAATATGTCAAAAAGAACTGACCAGTATATGTTGTTGTATACATGTATGTAAAACATGTTTATTTATGCTCACTTACTTACTGGTTAGCGTTTTCCTAGCGGGTTGGTTTTCTAAGGGATGGGGTCGCTAACCCCATGCCTAACCCTCCTCCCTTATCTGGGCTTAGGACCGGCAGTAGCCCCCGGAGGAGCTACAGGCAGATTTTCATCTATCCTACTGTGTATTGTTTTAATAGTAGTTGTATTTTAATGCACAAATAAAGTTATTTTAACTTTGAAT] [+] EMBL CD185276 [TTTCCTCTTGATTAAGTACTTCTATGAAGTACACACATATCAAACTTATTTTTCAAACTTTTTTGGCGAAGAACTTATCATCGTCAGTTTATTCAAAAAAACTTTAAAGCAAAGTAATCTACTCAGTTTTAATTTAATGTAGAGGCCATTTAGCATAAAATTCCCTTTTAACATTTGCTTATTGTGTATAATATGTCAAAAAGAACTGACCAGTATATGTTGTTGTATACATGTATGTAAAACATGTTTATTTATGCTCACTTACTTACTGGTTAGCGTTTTCCTAGCGGGTTGGTTTTCTAAGGGATGGGGTCGCTAACCCCATGCCTAACCCTCCTCCCTTATCTGGGCTTAGGACCGGCAGTAGCCCCCGGAGGAGCTACAGGCAGATTTTCATCTATCCTACTGTGTATTGTTTTAATAGTAGTTGTATTTTAATGCACAAATAAAGTTATTTTAACTTTGAAT] consensusID : consensus_4377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [AAAGAAAAATGAATCTATCTTGTTCACTTCTGAAATAGTGGGNCCCATCTACTTTTTCATTTATCAAGTGGCCGGGCAATAAACCGAACACTTTTTTCCCGGAAAAAAAGTATCTATGGATTTAAAAACTCGTGGATGAATTACAATCGACTAATAACTAATGAAAAGAGTCAATTTCAAGAGAAGTTAGATGAAATGAACAACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTATTACTAGAGTATTTAAATTACAGATTATCGATGAAATANATACAGAATGTGTGAAGANTATGGGAAACGTTGAAGATA] [+] EMBL CD153476 [AAAGAAAAATGAATCTATCTTGTTCACTTCTGAAATAGTGGGNCCCATCTACTTTTTCATTTATCAAGTGGCCGGGCAATAAACCGAACACTTTTTTCCCGGAAAAAAAGTATCTATGGATTTAAAAACTCGTGGATGAATTACAATCGACTAATAACTAATGAAAAGAGTCAATTTCAAGAGAAGTTAGATGAAATGAACAACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTATTACTAGAGTATTTAAATTACAGATTATCGATGAAATANATACAGAATGTGTGAAGANTATGGGAAACGTTGAAGATA] consensusID : consensus_4377#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [CAATGTATACTTCAAAGTAGAATATGTAATTGTTTTGTCAAACAAAAAACAACAGTTGATAGCAACGCTATCAATAATAGTAAACTTTTAACATTACTTAAGTAAAGTTAGATAGTAACTAGCATAAGAAATTAAGACTAGCATTTCATACTATGCCCCCAAATCCCCTGGTACGGCCGAGAGTGAGGAGAGTCCGCTCTCCCTCT] [+] EMBL CD064670 [CAATGTATACTTCAAAGTAGAATATGTAATTGTTTTGTCAAACAAAAAACAACAGTTGATAGCAACGCTATCAATAATAGTAAACTTTTAACATTACTTAAGTAAAGTTAGATAGTAACTAGCATAAGAAATTAAGACTAGCATTTCATACTATGCCCCCAAATCCCCTGGTACGGCCGAGAGTGAGGAGAGTCCGCTCTCCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4377#0 TTTCCTCTTGATTAAGTACTTCTATGAAGTACACACATATCAAACTTATTTTTCAAACTT 60 consensus_4377#2 ------------------------------------------------------------ consensus_4377#1 -------------------------------AAAGAAAAATGAATCTATCTTGTTCACTT 29 consensus_4377#0 TTTTGGCGAAGAACTTATCATCGTCAGTTTATTCAAAAAAACTTTAAAGCAAAGTAATCT 120 consensus_4377#2 --------------------------------CAATGTATACTTCAAAGTAGAATATGTA 28 consensus_4377#1 CTGAAATAGTGGGNC--CCATCTACTTTTTCATTTATCAAGTGGCCGGGCAATAAACCGA 87 * * * * consensus_4377#0 ACTCAGTTTTAATTTAATGTAGAGGCCATTTAGCATAAAATTCCCTTTTAACATTTGCTT 180 consensus_4377#2 ATT--GTTTTGTCAAACAAAAAACAACAGTTGATAGCAA---CGCTATCAATAATAGTAA 83 consensus_4377#1 ACACTTTTTTCCCGGAAAAAAAGTATCTATGGATTTAAAAA-CTCGTGGATGAATTACAA 146 * **** * * * * ** * * * * * consensus_4377#0 ATTGTGTATAATATGTCAAAAAGAACTGACCAGTATATGTTGTTGTATACATGTATGTAA 240 consensus_4377#2 ACTTTTAACATTAC-TTAAGTAAAGTTAGATAGTA---ACTAGCATAAGAAATTAAGACT 139 consensus_4377#1 TCGACTAATAAC-TAATGAAAAGAGTCAATTTCAAGA-GAAGTTAGATGAA---ATGAAC 201 * * * * * * * * * * consensus_4377#0 AACATGTTTATTTATGCTCACTTACTTACTGGTTAG--CGTTTTCCTAGCGGGTTGGTTT 298 consensus_4377#2 AGCATTTCATACTATGCCCCCAAATCCCCTGGTACGGCCGAGAGTGAGGAGAGTCCGCTC 199 consensus_4377#1 AACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTATTACTAGAGTA 261 * ** *** * ** * * * consensus_4377#0 TCTAAGGGATGGGGTCGCTAACCCCATGCCTAACCCTCCTCCCTTATCTGGGCTTAGGAC 358 consensus_4377#2 TCCCTCT----------------------------------------------------- 206 consensus_4377#1 TTTAAATTACAGA-TTATCGATGAAATANATACAGAATGTGTGAAGANTATGGGAAACGT 320 * consensus_4377#0 CGGCAGTAGCCCCCGGAGGAGCTACAGGCAGATTTTCATCTATCCTACTGTGTATTGTTT 418 consensus_4377#2 ------------------------------------------------------------ consensus_4377#1 TGAAGATA---------------------------------------------------- 328 consensus_4377#0 TAATAGTAGTTGTATTTTAATGCACAAATAAAGTTATTTTAACTTTGAAT 468 consensus_4377#2 -------------------------------------------------- consensus_4377#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||