cluster # 4378

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Schistosoma mansoni
cluster # 4378 cluster # 4378 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4378#0 length = 566 sequences # 2

consensus_4378#1 length = 226 sequences # 1

consensusID : consensus_4378#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 566
fasta sequence

                              [TCGGAGTCAACGTGTACGCTCTTGCTCCGCCCCGACGGTGCACAGGGAGGAGGTCACATGTCTACGTCATGGGACGGGCCGGTGATGCGCCCGCTGCTCGCAACTTGGAAAGTATGAGCAAGACAACAGGATCTCACCTTAGTCCGGACAAGCCGAACCTTTACCTTCACCTCGCCTTTGGGTTTCGTAACACCCAATGAAACCCCATCAATCCGGAATTCAAAATCAAGTAAGCTTTTGCCCTTTTACTCTACGCCAGGTTTCTGTCCTGACTGAGCTCACCATAGGACACCCGCGTTACCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGGTCGCACATCACATCAAGACTCAAACACCGCAATTCGCACCACGACTCATCTGACATGATCAAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATACAATTTCGTTCCCGTTTCGCTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTGCGGGGAAACCTCTCTAATCGAATCC]

[+] EMBL BG932161             [TCGGAGTCAACGTGTACGCTCTTGCTCCGCCCCGACGGTGCACAGGGAGGAGGTCACATGTCTACGTCATGGGACGGGCCGGTGATGCGCCCGCTGCTCGCAACTTGGAAAGTATGAGCAAGACAACAGGATCTCACCTTAGTCCGGACAAGCCGAACCTTTACCTTCACCTCGCCTTTGGGTTTCGTAACACCCAATGAAACCCCATCAATCCGGAATTCAAAATCAAGTAAGCTTTTGCCCTTTTACTCTACGCCAGGTTTCTGTCCTGACTGAGCTCACCATAGGACACCCGCGTTACCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGGTCGCACATCACATCAAGACTCAAACACCGCAATTCGCACCACGACTCATC                                                                                                                                                            ]
[-] EMBL CD191013             [                                                                                                                                                                                                                                                                                                    CCGCGTTACCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGGTCGCACATCACATCAAGACTCAAACACCGCAATTCGCACCACGACTCATCTGACATGATCAAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATACAATTTCGTTCCCGTTTCGCTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATTGCGGGGAAACCTCTCTAATCGAATCC]




>consensus_4378#0
TCGGAGTCAACGTGTACGCTCTTGCTCCGCCCCGACGGTGCACAGGGAGGAGGTCACATG
TCTACGTCATGGGACGGGCCGGTGATGCGCCCGCTGCTCGCAACTTGGAAAGTATGAGCA
AGACAACAGGATCTCACCTTAGTCCGGACAAGCCGAACCTTTACCTTCACCTCGCCTTTG
GGTTTCGTAACACCCAATGAAACCCCATCAATCCGGAATTCAAAATCAAGTAAGCTTTTG
CCCTTTTACTCTACGCCAGGTTTCTGTCCTGACTGAGCTCACCATAGGACACCCGCGTTA
CCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGG
TCGCACATCACATCAAGACTCAAACACCGCAATTCGCACCACGACTCATCTGACATGATC
AAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATA
CAATTTCGTTCCCGTTTCGCTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCATT
GCGGGGAAACCTCTCTAATCGAATCC

consensusID : consensus_4378#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [GCGTTACCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGGTCGCACATCACATCAAGACTCCAACACCGCAATTCGCACCACGACTCATCTGACATGACCAAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATACAATTTCGTTACCCGTTTCCGGTCAATCTTGTTGGACGTA]

[-] EMBL CD063750             [GCGTTACCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGGTCGCACATCACATCAAGACTCCAACACCGCAATTCGCACCACGACTCATCTGACATGACCAAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATACAATTTCGTTACCCGTTTCCGGTCAATCTTGTTGGACGTA]




>consensus_4378#1
GCGTTACCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAG
AACGGGTCGCACATCACATCAAGACTCCAACACCGCAATTCGCACCACGACTCATCTGAC
ATGACCAAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACC
AAAATACAATTTCGTTACCCGTTTCCGGTCAATCTTGTTGGACGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4378#0      TCGGAGTCAACGTGTACGCTCTTGCTCCGCCCCGACGGTGCACAGGGAGGAGGTCACATG 60
consensus_4378#1      ------------------------------------------------------------
                                                                                  

consensus_4378#0      TCTACGTCATGGGACGGGCCGGTGATGCGCCCGCTGCTCGCAACTTGGAAAGTATGAGCA 120
consensus_4378#1      ------------------------------------------------------------
                                                                                  

consensus_4378#0      AGACAACAGGATCTCACCTTAGTCCGGACAAGCCGAACCTTTACCTTCACCTCGCCTTTG 180
consensus_4378#1      ------------------------------------------------------------
                                                                                  

consensus_4378#0      GGTTTCGTAACACCCAATGAAACCCCATCAATCCGGAATTCAAAATCAAGTAAGCTTTTG 240
consensus_4378#1      ------------------------------------------------------------
                                                                                  

consensus_4378#0      CCCTTTTACTCTACGCCAGGTTTCTGTCCTGACTGAGCTCACCATAGGACACCCGCGTTA 300
consensus_4378#1      ------------------------------------------------------GCGTTA 6
                                                                            ******

consensus_4378#0      CCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGG 360
consensus_4378#1      CCATTTGACGGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATGGTCTTCAGAACGGG 66
                      ************************************************************

consensus_4378#0      TCGCACATCACATCAAGACTCAAACACCGCAATTCGCACCACGACTCATCTGACATGATC 420
consensus_4378#1      TCGCACATCACATCAAGACTCCAACACCGCAATTCGCACCACGACTCATCTGACATGACC 126
                      ********************* ************************************ *

consensus_4378#0      AAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATA 480
consensus_4378#1      AAGATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATA 186
                      ************************************************************

consensus_4378#0      CAATTTCGTT-CCCGTTTC-GCTGAATAAGTAAAGAAACAATGATAGCAGTGGTATTTCA 538
consensus_4378#1      CAATTTCGTTACCCGTTTCCGGTCAATCTTGTTGGACGTA-------------------- 226
                      ********** ******** * * ***       **   *                    

consensus_4378#0      TTGCGGGGAAACCTCTCTAATCGAATCC 566
consensus_4378#1      ----------------------------