cluster # 4384

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Schistosoma mansoni
cluster # 4384 cluster # 4384 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4384#0 length = 561 sequences # 1

consensus_4384#1 length = 551 sequences # 2

consensusID : consensus_4384#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence

                              [ACCCAACCATTCATCTACCCATCTATCAAACGACCAACACTTCTTACACACACCCATTCACTCACTCACTCACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACACACAAAACAAATACATTCGTATCACTACAACTACAATTTACAATCCTACTACATCCATTCAATTCATCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGATGTCCCTATCTTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATCAATAAACACACTCACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTGAAATAAACAAACAAATATACATAAACAATTAACATCTCAATCAATCATTATTATTATTATTATTATTTCTCATACACACACACACACACCATATGACATCAACATCAGTGGTTCCTTAGAAGTAAACGGCATATTAACATGTATACCGAAAGGTC]

[+] EMBL CD085069             [ACCCAACCATTCATCTACCCATCTATCAAACGACCAACACTTCTTACACACACCCATTCACTCACTCACTCACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACACACAAAACAAATACATTCGTATCACTACAACTACAATTTACAATCCTACTACATCCATTCAATTCATCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGATGTCCCTATCTTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATCAATAAACACACTCACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTGAAATAAACAAACAAATATACATAAACAATTAACATCTCAATCAATCATTATTATTATTATTATTATTTCTCATACACACACACACACACCATATGACATCAACATCAGTGGTTCCTTAGAAGTAAACGGCATATTAACATGTATACCGAAAGGTC]




>consensus_4384#0
ACCCAACCATTCATCTACCCATCTATCAAACGACCAACACTTCTTACACACACCCATTCA
CTCACTCACTCACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACACACAA
AACAAATACATTCGTATCACTACAACTACAATTTACAATCCTACTACATCCATTCAATTC
ATCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGATGTCCCTAT
CTTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATCAATAAACACACTCA
CCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTA
CGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTGAAATAAACAAACAA
ATATACATAAACAATTAACATCTCAATCAATCATTATTATTATTATTATTATTTCTCATA
CACACACACACACACCATATGACATCAACATCAGTGGTTCCTTAGAAGTAAACGGCATAT
TAACATGTATACCGAAAGGTC

consensusID : consensus_4384#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 551
fasta sequence

                              [TCGCAAGGTGGTTCAGTGGCCCTTTATAATGCACTAACGAGCACTTTACAGTATGGTGGGGTTGTTGCTTTCAGTTGTTGGCTTCCACTCCATACAAAATTTATGTCCTCACCCACACTCTTGACTATGCCCAAGGATGTACCAGTTTTCCAGTGTCATGGATTGGAGGATTATACAATTCCCTTTGCCATGGGAAAGCTAACTCATGAGCTTTTAAAAACTTTCCAGTTATCCAAATGTGAACTCAACTGTTATCCTCAATTATCTCACTCATCATGTGAAAAGGAAATGGGAGATCTCCGAACGTTCTTGTC--AAAAACATACCTGCTTGCTGATTTTTGNTACCGTATGNTCATAATTGTCAATATATGAAAGTTGTTCTACTGCGATCCTAACTACAAGTATTAATCTTTTCACTAAGTTCTTGACTTCTATTGCTTGGCGTGCTATGTATTAGTCATCCAGTCTGTCTAGTTCACGTACATTCTGTCTCGTATCTGAAGAATTCGCCAATTGTTTGTAATTCGGAATCACCGCAGGCTATTTGAAAT]

[+] EMBL CD141194             [TCGCAAGGTGGTTCAGTGGCCCTTTATAATGCACTAACGAGCACTTTACAGTATGGTGGGGTTGTTGCTTTCAGTTGTTGGCTTCCACTCCATACAAAATTTATGTCCTCACCCACACTCTTGACTATGCCCAAGGATGTACCAGTTTTCCAGTGTCATGGATTGGAGGATTATACAATTCCCTTTGCCATGGGAAAGCTAACTCATGAGCTTTTAAAAACTTTCCAGTTATCCAAATGTGAACTCAACTGTTATCCTCAATTATCTCACTCATCATGTGAAAAGGAAATGGGAGATCTCCGAACGTTCTTGTC  AAAAACATACCTGCTTGCTGATTTTTGNTACCGTATGN                                                                                                                                                                                                       ]
[+] EMBL CD062981             [                                                                                                                                                                                                                           ACTTTCCAGTTATCCAAATGTGAACTCAACTGTTATCCTCAATTATCTCACTCATCATGTGAAAAGGAAATGGGAGATCTCCGAACGTTCTTGTCAAAAAAACATACCTGCTTGCTGATTTTTGTTACCGTATGGTCATAATTGTCAATATATGAAAGTTGTTCTACTGCGATCCTAACTACAAGTATTAATCTTTTCACTAAGTTCTTGACTTCTATTGCTTGGCGTGCTATGTATTAGTCATCCAGTCTGTCTAGTTCACGTACATTCTGTCTCGTATCTGAAGAATTCGCCAATTGTTTGTAATTCGGAATCACCGCAGGCTATTTGAAAT]




>consensus_4384#1
TCGCAAGGTGGTTCAGTGGCCCTTTATAATGCACTAACGAGCACTTTACAGTATGGTGGG
GTTGTTGCTTTCAGTTGTTGGCTTCCACTCCATACAAAATTTATGTCCTCACCCACACTC
TTGACTATGCCCAAGGATGTACCAGTTTTCCAGTGTCATGGATTGGAGGATTATACAATT
CCCTTTGCCATGGGAAAGCTAACTCATGAGCTTTTAAAAACTTTCCAGTTATCCAAATGT
GAACTCAACTGTTATCCTCAATTATCTCACTCATCATGTGAAAAGGAAATGGGAGATCTC
CGAACGTTCTTGTCAAAAACATACCTGCTTGCTGATTTTTGNTACCGTATGNTCATAATT
GTCAATATATGAAAGTTGTTCTACTGCGATCCTAACTACAAGTATTAATCTTTTCACTAA
GTTCTTGACTTCTATTGCTTGGCGTGCTATGTATTAGTCATCCAGTCTGTCTAGTTCACG
TACATTCTGTCTCGTATCTGAAGAATTCGCCAATTGTTTGTAATTCGGAATCACCGCAGG
CTATTTGAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4384#0      --ACCCAACCATTCATCTACCCATCT--ATCAAACGACCAACACTTCTTA-CACACACCC 55
consensus_4384#1      TCGCAAGGTGGTTCAGTGGCCCTTTATAATGCACTAACGAGCACTTTACAGTATGGTGGG 60
                         *       ****    *** *    **  *   ** * *****   *  *       

consensus_4384#0      ATTCACTCACTCACTCACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACA 115
consensus_4384#1      GTTGTTGCTTTCAGTTGTTGGCTTCCACT---CCATACAAAATTTATGTCCTCACCCACA 117
                       **    *  *** *   *  **** * *     *    ****      *    *  ***

consensus_4384#0      CACAAAACAAATACATTCGTAT-CACTACAACTACAATTTACAATCCTACTACATCCATT 174
consensus_4384#1      CTCTTGACTA-TGCCCAAGGATGTACCAGTTTTCCAGTGT-CATGGATTGGAGGATTATA 175
                      * *   ** * * *    * **  ** *    * ** * * **    *   *     ** 

consensus_4384#0      CAATTCATCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGATGT 234
consensus_4384#1      CAATTCCCT---TTGCCATGGGAAAGCTAACTCATGAGCTTTTAAAAACTTTCCAGTTAT 232
                      ******      *  *  *  ***  * **   *  **   * **     *  *** * *

consensus_4384#0      CCCTATCTTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATCAATAAACA 294
consensus_4384#1      CCAAATGTGAACTCAACTGTTATCCTCAATTATCTCACTCATCATGTGAAAAGGAAATGG 292
                      **  ** * ** ***    * ** * **  *   * *** *****   **     **   

consensus_4384#0      CACTCACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTT 354
consensus_4384#1      GAGATCTCCGAACGTTCTTGTCAAAAAC-ATACCTGCT-TGCTG-ATTTTTGNTACCGTA 349
                       *     *    **      ******** * ** * ** ***** * * *       ** 

consensus_4384#0      CTACTACGACCCAACACCAACAC-CAACACCAACACCAACACCAACCAACCTGAAATAAA 413
consensus_4384#1      TGNTCATAATT----GTCAATATATGAAAGTTGTTCTACTGCGATCCTAACTACAAGTAT 405
                           *  *        *** *    * *      * *   * * ** * **  **  * 

consensus_4384#0      CAAACAAATATACATAAACAATTAACATCTCAATCAATCATTATTAT-TATTA-TTATTA 471
consensus_4384#1      TAATC--TTTTCACTAAGTTCTTGACTTCTATTGCTTGGCGTGCTATGTATTAGTCATCC 463
                       ** *   * *   ***    ** ** ***    *      *  *** ***** * **  

consensus_4384#0      TTTCTCATACACACACACACACACCATATGACATCAACATCAGTGGTTCCTTAGAAGTAA 531
consensus_4384#1      AGTCTGTCTAGTTCACGTACATTCTGTCTCGTATCTGAAGAATTCGCCAATTGTTTGTAA 523
                        ***        ***  ***  *  * *   ***   *  * * *    **    ****

consensus_4384#0      A-CGGCATATTAACATGTATACCGAAAGGTC 561
consensus_4384#1      TTCGGAATCACCGCAGGCTATTTGAAAT--- 551
                        *** **     ** *      ****