cluster # 4391

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Schistosoma mansoni
cluster # 4391 cluster # 4391 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4391#0 length = 832 sequences # 2

consensus_4391#1 length = 482 sequences # 1

consensusID : consensus_4391#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 832
fasta sequence

                              [CATTTCAATTTAGTGTTGCTTAGATTTTTGGCAATTAAACTGTTATGCGTACTTATTTCTAGGTTAAATGTCAAAAGCACCAAAAGAAAAAGAAATTGGTGCAGTTCGCTTACAACTTTTGGTTGACAAAATTACTACATCTGGTTCCAATAACGCTGATTGTTCACTAGTTGAAGAGACCGTAAATATATGCAGCAAATCAAGTTCTACTGTTTCTGATTTATTTCGATTTGCTACTGTTCAATTACGCCGTAATCATGCTCAGATTCGACTTGGCGTGTTAACATTACTTAGATTATTATCTTCTCCCCAAGCGATCGTTCGTCAGTTAACTCTTAGTATAAATGATGCAATCAAATTCATTCCTTTAGCGAAGTGTCTTCGTAACTTGATTTTAGATAATTTGCAGGATACTTTTTCATATATGGTACAGTTAGAATCATATTCTGCGCCTATTCTTTTACC-AAAGAAGCCCGCT-AAGAATTACAGTTTGAAGCAATAGAACTTCTGCTTGATTGGGAGTATGAATTAGAACAAGGATATTTTGATGTTACTCCTTGGAATCCTGACCCATCCCCGCCCCTATCATGGGTACCATCACAGAGAGCCAAAGGTCAATTGAAAGCATTTATAAATTTCCTCAATTTGGATAGTCGGCCTTTGGGTAATGATTGTTCTGGATATTGTCCAACAAAACAACTAATAAAAAAGATACAAGAACAACGTCAACAAAAGTCTCAATTGTTCAAGAGTCAAGTGATAAAATCTCATCGCCTTCTTGATGATTGCCTGAATGAAATCGAAGATGTAGCGAGTCGGTTGAAGAAAATTA]

[+] EMBL CD162336             [CATTTCAATTTAGTGTTGCTTAGATTTTTGGCAATTAAACTGTTATGCGTACTTATTTCTAGGTTAAATGTCAAAAGCACCAAAAGAAAAAGAAATTGGTGCAGTTCGCTTACAACTTTTGGTTGACAAAATTACTACATCTGGTTCCAATAACGCTGATTGTTCACTAGTTGAAGAGACCGTAAATATATGCAGCAAATCAAGTTCTACTGTTTCTGATTTATTTCGATTTGCTACTGTTCAATTACGCCGTAATCATGCTCAGATTCGACTTGGCGTGTTAACATTACTTAGATTATTATCTTCTCCCCAAGCGATCGTTCGTCAGTTAACTCTTAGTATAAATGATGCAATCAAATTCATTCCTTTAGCGAAGTGTCTTCGTAACTTGATTTTAGATAATTTGCAGGATACTTTTTCATATATGGTACAGTTAGAATCATATTCTGCGCCTATTCTTTTACC AAAGAAGCCCGCT AAGAATT                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AI067714             [                                                                                                                                                                                                                                                                                                                                                                                                                AATTTGCAGGATACTTTTTCATATATGGTACAGTTAGAATCATATTCTGCGCCTATTCTTTTACCAAAAGAAG CCGCTAAAGAATTACAGTTTGAAGCAATAGAACTTCTGCTTGATTGGGAGTATGAATTAGAACAAGGATATTTTGATGTTACTCCTTGGAATCCTGACCCATCCCCGCCCCTATCATGGGTACCATCACAGAGAGCCAAAGGTCAATTGAAAGCATTTATAAATTTCCTCAATTTGGATAGTCGGCCTTTGGGTAATGATTGTTCTGGATATTGTCCAACAAAACAACTAATAAAAAAGATACAAGAACAACGTCAACAAAAGTCTCAATTGTTCAAGAGTCAAGTGATAAAATCTCATCGCCTTCTTGATGATTGCCTGAATGAAATCGAAGATGTAGCGAGTCGGTTGAAGAAAATTA]




>consensus_4391#0
CATTTCAATTTAGTGTTGCTTAGATTTTTGGCAATTAAACTGTTATGCGTACTTATTTCT
AGGTTAAATGTCAAAAGCACCAAAAGAAAAAGAAATTGGTGCAGTTCGCTTACAACTTTT
GGTTGACAAAATTACTACATCTGGTTCCAATAACGCTGATTGTTCACTAGTTGAAGAGAC
CGTAAATATATGCAGCAAATCAAGTTCTACTGTTTCTGATTTATTTCGATTTGCTACTGT
TCAATTACGCCGTAATCATGCTCAGATTCGACTTGGCGTGTTAACATTACTTAGATTATT
ATCTTCTCCCCAAGCGATCGTTCGTCAGTTAACTCTTAGTATAAATGATGCAATCAAATT
CATTCCTTTAGCGAAGTGTCTTCGTAACTTGATTTTAGATAATTTGCAGGATACTTTTTC
ATATATGGTACAGTTAGAATCATATTCTGCGCCTATTCTTTTACCAAAGAAGCCCGCTAA
GAATTACAGTTTGAAGCAATAGAACTTCTGCTTGATTGGGAGTATGAATTAGAACAAGGA
TATTTTGATGTTACTCCTTGGAATCCTGACCCATCCCCGCCCCTATCATGGGTACCATCA
CAGAGAGCCAAAGGTCAATTGAAAGCATTTATAAATTTCCTCAATTTGGATAGTCGGCCT
TTGGGTAATGATTGTTCTGGATATTGTCCAACAAAACAACTAATAAAAAAGATACAAGAA
CAACGTCAACAAAAGTCTCAATTGTTCAAGAGTCAAGTGATAAAATCTCATCGCCTTCTT
GATGATTGCCTGAATGAAATCGAAGATGTAGCGAGTCGGTTGAAGAAAATTA

consensusID : consensus_4391#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [TAAGTATTATGTAATATCAATAATAATAAAGTAATTATTATTGGTAATGACGGTTCTACATAGTAGGTGATTTATAAACAGTAGATAGGTGTTTACTGACTCTTGAGGGTGCAACACGAAGCAAGACTGGTCATAACGGTAATCTAAAATGCCATTTCTTCCCAGCGCCAGTTTAGTTCCAGTGTTCGTTCCGAAAATTTGCTATCAGCGATACTACATTTCAACAGCTAGTCAGTCATATAAGTGGAAACCTCACCCCTTACACAATGGCATTGTAGTGCCGCGATTCGTTAATCGTTTACTTCGATAACCGTTATAATTCTAAACTTAACGGTGCGTAAAATCAGAAGACGAAGGATAGCAGCAACTACAGTTTATTGTCGAATAACTCAGATCAAAAAGCTAACAACACCTGAGCGAATATCAACGAGCGAGCGGCAAGCGAGAGAGCGAGGGAACAGGCGGACAAGCGAAGGAAACGA]

[+] EMBL CD098113             [TAAGTATTATGTAATATCAATAATAATAAAGTAATTATTATTGGTAATGACGGTTCTACATAGTAGGTGATTTATAAACAGTAGATAGGTGTTTACTGACTCTTGAGGGTGCAACACGAAGCAAGACTGGTCATAACGGTAATCTAAAATGCCATTTCTTCCCAGCGCCAGTTTAGTTCCAGTGTTCGTTCCGAAAATTTGCTATCAGCGATACTACATTTCAACAGCTAGTCAGTCATATAAGTGGAAACCTCACCCCTTACACAATGGCATTGTAGTGCCGCGATTCGTTAATCGTTTACTTCGATAACCGTTATAATTCTAAACTTAACGGTGCGTAAAATCAGAAGACGAAGGATAGCAGCAACTACAGTTTATTGTCGAATAACTCAGATCAAAAAGCTAACAACACCTGAGCGAATATCAACGAGCGAGCGGCAAGCGAGAGAGCGAGGGAACAGGCGGACAAGCGAAGGAAACGA]




>consensus_4391#1
TAAGTATTATGTAATATCAATAATAATAAAGTAATTATTATTGGTAATGACGGTTCTACA
TAGTAGGTGATTTATAAACAGTAGATAGGTGTTTACTGACTCTTGAGGGTGCAACACGAA
GCAAGACTGGTCATAACGGTAATCTAAAATGCCATTTCTTCCCAGCGCCAGTTTAGTTCC
AGTGTTCGTTCCGAAAATTTGCTATCAGCGATACTACATTTCAACAGCTAGTCAGTCATA
TAAGTGGAAACCTCACCCCTTACACAATGGCATTGTAGTGCCGCGATTCGTTAATCGTTT
ACTTCGATAACCGTTATAATTCTAAACTTAACGGTGCGTAAAATCAGAAGACGAAGGATA
GCAGCAACTACAGTTTATTGTCGAATAACTCAGATCAAAAAGCTAACAACACCTGAGCGA
ATATCAACGAGCGAGCGGCAAGCGAGAGAGCGAGGGAACAGGCGGACAAGCGAAGGAAAC
GA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4391#0      CATTTCAATTTAGTGTTGCTTAGATTTTTGGCAATTAAACTGTTATGCGTACTTATTTCT 60
consensus_4391#1      ------------------------------------------------------------
                                                                                  

consensus_4391#0      AGGTTAAATGTCAAAAGCACCAAAAGAAAAAGAAATTGGTGCAGTTCGCTTACAACTTTT 120
consensus_4391#1      ----------------------------------------------TAAGTATTATGTAA 14
                                                                        **  *  *  

consensus_4391#0      GGTTGACAAAATTACTACATCTGGTTCCAATAACGCTGATTGTTCACTAGTTGAAGAGAC 180
consensus_4391#1      TATCAATAATAATAAAGTAATTATTATTGGTAATGACGGTTCTACA-TAGT--AGGTGAT 71
                        *  * ** * **    *  *  *     *** *  * ** * ** ****  * * ** 

consensus_4391#0      CGTAAATATATGCAGCAAATCAAGTTCTACTGTTTCT----GATTTATTTCGATTTGCTA 236
consensus_4391#1      T-----TATAAACAGTAGATAGGTGTTTACTGACTCTTGAGGGTGCAACACGAAGCAAGA 126
                            ****  *** * **     * *****  ***    * *  *   ***      *

consensus_4391#0      CTGTTCAATTACGCCGTAATCATGCTCAGATTCGACTTGGCGTGTTAACATTACTTAGAT 296
consensus_4391#1      CTGGTCA-TAACG--GTAAT----CTAAAATGCCATTT--CTTCCCAGCGCCAGTTTAGT 177
                      *** *** * ***  *****    ** * ** * * **  * *   * *   * **   *

consensus_4391#0      TATTATCTTCTCCCCAAGCGATCGTTCGTCAGTTAACTCTTAGTATAAATGATGCAATCA 356
consensus_4391#1      TCCAGTGTTCGTTCCGAAAATTTGCT-ATCAGCGA-----TACTACATTTCA-ACAGCTA 230
                      *    * ***   ** *    * * *  ****  *     ** ** *  * *  **   *

consensus_4391#0      AATTCATTCCTTTAGCGAAGTGTCTTCGTAACTTGATTTTAGATAATTTGCAGGATACTT 416
consensus_4391#1      G--TCAGTCATATAA-GTGGAAACCTCACCCCTTACACAATGGCA--TTGTAGTGCCGCG 285
                         *** ** * **  *  *   * **    ***       *  *  *** **       

consensus_4391#0      TTTCATATATGGTACAGTTAGAATCATATTCTGCGCCTATTCTTTTACCAAAGAAGCCCG 476
consensus_4391#1      ATTCGTTAATCGTTTACTTCGATAACCGTTATAATTCTAAACTT---------AACGGTG 336
                       *** *  ** **  * ** **      ** *    ***  ***         **    *

consensus_4391#0      CTAAGAATTACAGTTTGAAG--CAATAGAACTTCTGCTTGATTGGGAGTATGAATTAGAA 534
consensus_4391#1      CGTAAAATCAGAAGACGAAGGATAGCAGCAACTACAGTTTATTGTC-GAATAACTCAGAT 395
                      *  * *** * *    ****   *  ** *  *    ** ****   * ** * * *** 

consensus_4391#0      CAAGGATATTTTGATGTTACTCCTTGGAATCCTGACCCATCCCCGCCCCTATCATGGGTA 594
consensus_4391#1      CAAAAAG---CTAACAACACCTGAGCGAATATCAAC--GAGCGAGCGGCAAGCGAGAGAG 450
                      ***  *     * *    **      ****    **     *  **  * * *  * *  

consensus_4391#0      CCATCACAGAGAGCCAAAGGTCAATTGAAAGCATTTATAAATTTCCTCAATTTGGATAGT 654
consensus_4391#1      CGA-----GGGAACAGGCGGACAAGCGAAGGAAACGA----------------------- 482
                      * *     * ** *    ** ***  *** * *   *                       

consensus_4391#0      CGGCCTTTGGGTAATGATTGTTCTGGATATTGTCCAACAAAACAACTAATAAAAAAGATA 714
consensus_4391#1      ------------------------------------------------------------
                                                                                  

consensus_4391#0      CAAGAACAACGTCAACAAAAGTCTCAATTGTTCAAGAGTCAAGTGATAAAATCTCATCGC 774
consensus_4391#1      ------------------------------------------------------------
                                                                                  

consensus_4391#0      CTTCTTGATGATTGCCTGAATGAAATCGAAGATGTAGCGAGTCGGTTGAAGAAAATTA 832
consensus_4391#1      ----------------------------------------------------------