cluster # 4392

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Schistosoma mansoni
cluster # 4392 cluster # 4392 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4392#0 length = 597 sequences # 1

consensus_4392#1 length = 545 sequences # 1
consensus_4392#2 length = 348 sequences # 1

consensusID : consensus_4392#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [TGCCTGGAGGTATTGGTGATCCACTGCTACTAGACACGGAAGCCGGTTAAGCGAAAGCTTCTTCTATTCCGTCGTCAACCATTTGAACCATTTGAACGTAAGGCGCTAAAGTACACTAAAGTACATTTGTCACTGAATGTTGATTGCTGTTCAACAGATGATGAAAAAGGATAATAACACAAGTTCAACCATATATCTCAATAAAACCTTACAAAATAAGATCATTGTGAATAGCACATGTGAACAGAAAAGACAGGATTTGTCAGTTTCATGGTCGCCAAATGTCAATCTCTCAAACTGGAAACTTATATTTGTGTTTGGAGAGGATTCTGAAAGATATGACCTGGAACGCATAGGCGTTACTTACACAACAATTAAAGGCAATGAAATTGATGCTAATACAGATAGAGGTTTGTTCACTATTCCTGTTGGTGGATATTATGAATGTGCCAGTCGTTTGCATAGAGAACTATTCGTGGAAGATAATGATAATATAATGATCAATATTTATTTTTTAAACTCATCAATGGAAGCATTCAGACTTGAAAATCGTCGAGAATTTATGGGCCATGCCATAGATTGTCCATTGAGTATCTT]

[+] EMBL CD078756             [TGCCTGGAGGTATTGGTGATCCACTGCTACTAGACACGGAAGCCGGTTAAGCGAAAGCTTCTTCTATTCCGTCGTCAACCATTTGAACCATTTGAACGTAAGGCGCTAAAGTACACTAAAGTACATTTGTCACTGAATGTTGATTGCTGTTCAACAGATGATGAAAAAGGATAATAACACAAGTTCAACCATATATCTCAATAAAACCTTACAAAATAAGATCATTGTGAATAGCACATGTGAACAGAAAAGACAGGATTTGTCAGTTTCATGGTCGCCAAATGTCAATCTCTCAAACTGGAAACTTATATTTGTGTTTGGAGAGGATTCTGAAAGATATGACCTGGAACGCATAGGCGTTACTTACACAACAATTAAAGGCAATGAAATTGATGCTAATACAGATAGAGGTTTGTTCACTATTCCTGTTGGTGGATATTATGAATGTGCCAGTCGTTTGCATAGAGAACTATTCGTGGAAGATAATGATAATATAATGATCAATATTTATTTTTTAAACTCATCAATGGAAGCATTCAGACTTGAAAATCGTCGAGAATTTATGGGCCATGCCATAGATTGTCCATTGAGTATCTT]




>consensus_4392#0
TGCCTGGAGGTATTGGTGATCCACTGCTACTAGACACGGAAGCCGGTTAAGCGAAAGCTT
CTTCTATTCCGTCGTCAACCATTTGAACCATTTGAACGTAAGGCGCTAAAGTACACTAAA
GTACATTTGTCACTGAATGTTGATTGCTGTTCAACAGATGATGAAAAAGGATAATAACAC
AAGTTCAACCATATATCTCAATAAAACCTTACAAAATAAGATCATTGTGAATAGCACATG
TGAACAGAAAAGACAGGATTTGTCAGTTTCATGGTCGCCAAATGTCAATCTCTCAAACTG
GAAACTTATATTTGTGTTTGGAGAGGATTCTGAAAGATATGACCTGGAACGCATAGGCGT
TACTTACACAACAATTAAAGGCAATGAAATTGATGCTAATACAGATAGAGGTTTGTTCAC
TATTCCTGTTGGTGGATATTATGAATGTGCCAGTCGTTTGCATAGAGAACTATTCGTGGA
AGATAATGATAATATAATGATCAATATTTATTTTTTAAACTCATCAATGGAAGCATTCAG
ACTTGAAAATCGTCGAGAATTTATGGGCCATGCCATAGATTGTCCATTGAGTATCTT

consensusID : consensus_4392#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [TTGGTTTGGAATGAGGGTTTTCCAACTGCTCTAGATAGACTTTCCGTATCCACCAACCCGGTTAAAGCTCCGGACATTCGCTTTTCGTCCTCTCACTTTCGTAAACAACATCCCCGCCACGAGAATGCAGTGAGTAGGACTTCTCTGGCAGAGGCTATATAGGCGTGGCCATGTGAGAATCATTTCGAGAAGGAGAGCGGACTCTCTCCACTCTCGACCGTACCAGGGCATTTGGGGGCAATGACAGATTGATCAATCGCAGTTCTAAGCGTTAAAGGTAATATTCAAACAACTAATACAAAAATGAATAATTGTTTATTCAATGGCAATTATTGTAGGATACATTGATTGATTTCAATAATTTTCATAATAGATCTAAAATTTCTACCATAAATATTGAACCACATTTATTAACCCTAATACTTCATACTTTATATAAATAACCTTTAAGTGAAAAATCATCCGATTTAGAATTTCAGCTTAAGTTAGTTAATTATTACCTTCTATGTAGGCTACTACTCATTAATTTCATATTTATAAAACTA]

[+] EMBL BF936808             [TTGGTTTGGAATGAGGGTTTTCCAACTGCTCTAGATAGACTTTCCGTATCCACCAACCCGGTTAAAGCTCCGGACATTCGCTTTTCGTCCTCTCACTTTCGTAAACAACATCCCCGCCACGAGAATGCAGTGAGTAGGACTTCTCTGGCAGAGGCTATATAGGCGTGGCCATGTGAGAATCATTTCGAGAAGGAGAGCGGACTCTCTCCACTCTCGACCGTACCAGGGCATTTGGGGGCAATGACAGATTGATCAATCGCAGTTCTAAGCGTTAAAGGTAATATTCAAACAACTAATACAAAAATGAATAATTGTTTATTCAATGGCAATTATTGTAGGATACATTGATTGATTTCAATAATTTTCATAATAGATCTAAAATTTCTACCATAAATATTGAACCACATTTATTAACCCTAATACTTCATACTTTATATAAATAACCTTTAAGTGAAAAATCATCCGATTTAGAATTTCAGCTTAAGTTAGTTAATTATTACCTTCTATGTAGGCTACTACTCATTAATTTCATATTTATAAAACTA]




>consensus_4392#1
TTGGTTTGGAATGAGGGTTTTCCAACTGCTCTAGATAGACTTTCCGTATCCACCAACCCG
GTTAAAGCTCCGGACATTCGCTTTTCGTCCTCTCACTTTCGTAAACAACATCCCCGCCAC
GAGAATGCAGTGAGTAGGACTTCTCTGGCAGAGGCTATATAGGCGTGGCCATGTGAGAAT
CATTTCGAGAAGGAGAGCGGACTCTCTCCACTCTCGACCGTACCAGGGCATTTGGGGGCA
ATGACAGATTGATCAATCGCAGTTCTAAGCGTTAAAGGTAATATTCAAACAACTAATACA
AAAATGAATAATTGTTTATTCAATGGCAATTATTGTAGGATACATTGATTGATTTCAATA
ATTTTCATAATAGATCTAAAATTTCTACCATAAATATTGAACCACATTTATTAACCCTAA
TACTTCATACTTTATATAAATAACCTTTAAGTGAAAAATCATCCGATTTAGAATTTCAGC
TTAAGTTAGTTAATTATTACCTTCTATGTAGGCTACTACTCATTAATTTCATATTTATAA
AACTA

consensusID : consensus_4392#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [TAAGAGTATAAGCAGTAANTCCGAAAGATTAATGTTTGAAGATGTTATTCAAGGAGTATAATCCAGTGAAATAAATTTGGAAAGAGAAAAAAGAAGGGGACATCAAGAATTCAGAAGTTTAGAATTTGCGAGAACAGAAAAAGTGGATGCACCTTCGCCATTGCAAACCATTTTGAACCATGTCATTCAAGATCTCTAACCATCGATTGCTATCATCTCGCGAACCCCAACCAGGTAGTCTACACCTACTAACATGGCTTAGTCGACTTGTCAGTGACTTTTACTACTTCATCAATCGATTCGCCATCCTTACCCAGTAACCGTCTCCTAACAACTGCATTACTTACT]

[+] EMBL CD132010             [TAAGAGTATAAGCAGTAANTCCGAAAGATTAATGTTTGAAGATGTTATTCAAGGAGTATAATCCAGTGAAATAAATTTGGAAAGAGAAAAAAGAAGGGGACATCAAGAATTCAGAAGTTTAGAATTTGCGAGAACAGAAAAAGTGGATGCACCTTCGCCATTGCAAACCATTTTGAACCATGTCATTCAAGATCTCTAACCATCGATTGCTATCATCTCGCGAACCCCAACCAGGTAGTCTACACCTACTAACATGGCTTAGTCGACTTGTCAGTGACTTTTACTACTTCATCAATCGATTCGCCATCCTTACCCAGTAACCGTCTCCTAACAACTGCATTACTTACT]




>consensus_4392#2
TAAGAGTATAAGCAGTAANTCCGAAAGATTAATGTTTGAAGATGTTATTCAAGGAGTATA
ATCCAGTGAAATAAATTTGGAAAGAGAAAAAAGAAGGGGACATCAAGAATTCAGAAGTTT
AGAATTTGCGAGAACAGAAAAAGTGGATGCACCTTCGCCATTGCAAACCATTTTGAACCA
TGTCATTCAAGATCTCTAACCATCGATTGCTATCATCTCGCGAACCCCAACCAGGTAGTC
TACACCTACTAACATGGCTTAGTCGACTTGTCAGTGACTTTTACTACTTCATCAATCGAT
TCGCCATCCTTACCCAGTAACCGTCTCCTAACAACTGCATTACTTACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4392#1      TTGGTTTGGAATGAGGGTTTTCCAACTGCTCTAGATAGACTTTCCGTATCCACCAACCCG 60
consensus_4392#2      ------------------------------------------------------------
consensus_4392#0      ----------TGCCTGGAGGTATTGGTGATCCACTGCTACTAGACACGGAAGCCGGTTAA 50
                                                                                  

consensus_4392#1      GTTAAAGCTCCGGACATTCGCTTTTCGTCC-TCTCACTTTCGTAAACAACATCCCCGCCA 119
consensus_4392#2      ------------------------------------------------------------
consensus_4392#0      GCGAAAGCTTCTTCTATTCCGTCGTCAACCATTTGAACCATTTGAACGTAAGGCGCTAAA 110
                                                                                  

consensus_4392#1      CGAGAATGCAGTGAGTAGGACTTCTCTGGCAGAG-GCTATATAGGCGTGGCCATGTGAGA 178
consensus_4392#2      ------------------------------TAAG-AGTATA-AGCAGTAANTCCGAAAGA 28
consensus_4392#0      GTACACTAAAGTACATTTGTCACTGAATGTTGATTGCTGTTCAACAGATGATGAAAAAGG 170
                                                      *    * *  *   *          ** 

consensus_4392#1      ATCATTTCGAGAAGG--AGAGCGGA-CTCTCTCCACTCTCG-ACCGTACCAGGGCATTTG 234
consensus_4392#2      TTAATGTTTGAAGAT--GTTATTCA-AGGAGTATAATC-----CAGTGAAATAAATTTGG 80
consensus_4392#0      ATAATAACACAAGTTCAACCATATATCTCAATAAAACCTTACAAAATAAGATCATTGTGA 230
                       * **      *            *      *  *  *        *   *      *  

consensus_4392#1      GGGGCAATGACAGATTGATCAATCGCAGTTCTAAGCGTTAAAGGTAATATTCAAACAACT 294
consensus_4392#2      AAAGAGAAAAAAGAAGGGGACATCAAGAATTCAGAAGTTTAGAAT----TTGCGAGAACA 136
consensus_4392#0      ATAGCACATGTGAACAGAAAAGACAGGATTTGTCAGTTTCATGGTCGCCAAATGTCAATC 290
                         *         *  *      *     *       ** *   *           **  

consensus_4392#1      AATACAAAAATGAATAATTGTTTATTCAATGGCAATTATTGTAGGATACATTGATTGATT 354
consensus_4392#2      GA---AAAAGTGGATGCACCTTCGC-CATTGCAAACCATTTTGAACCATGTCATTCAAGA 192
consensus_4392#0      TCTCAAACTGGAAACTTATATTTGT-GTTTGGAGAGGATTCTGAAAGATATGACCTGGAA 349
                           **      *      **       **   *  *** *     *  *         

consensus_4392#1      TCAATAATTTTCATAATAGATCTAAAATTTCTACCATAAAT--ATTGAACCACATTTATT 412
consensus_4392#2      TCTCTAACCATCG--ATTGCTATCATCTCGCGAACCCCAACCAGGTAGTCTACACCTACT 250
consensus_4392#0      CGCATAGGCGTTACTTACACAACAATTAAAGGCAATGAAATTGATGCTAATACAGATAGA 409
                          **    *             *             **           ***  **  

consensus_4392#1      AACCCTAATACTTCATACTTTATATAAATAACCTTTAAGTGAAAAATCATCCGATTTAGA 472
consensus_4392#2      AAC----ATGGCTTAGTCGACTTGTCAGTGACTTTTAC-TACTTCATCAATCGATTCGCC 305
consensus_4392#0      GGT-----TTGTTCACTATTCCTGTTGGTGGATATTAT-GAATGTGCCAGTCGTTTGCAT 463
                              *   * *       * *   *     ***          **  ** **    

consensus_4392#1      A------TTTCAGCTTAAGTTAGTTAATTATTACCTTCTA-TGTAGGCTACTACTCATTA 525
consensus_4392#2      A------TCCTTACCCAG--TAACCGTCTCCTAACAACTG-CATTACTTACT-------- 348
consensus_4392#0      AGAGAACTATTCGTGGAAGATAATGATAATATAATGATCAATATTTATTTTTTAAACTCA 523
                      *      *        *   **         **          *    *  *        

consensus_4392#1      ATTTCATATTTATAAAACTA---------------------------------------- 545
consensus_4392#2      ------------------------------------------------------------
consensus_4392#0      TCAATGGAAGCATTCAGACTTGAAAATCGTCGAGAATTTATGGGCCATGCCATAGATTGT 583
                                                                                  

consensus_4392#1      --------------
consensus_4392#2      --------------
consensus_4392#0      CCATTGAGTATCTT 597