cluster # 4395

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Schistosoma mansoni
cluster # 4395 cluster # 4395 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4395#0 length = 428 sequences # 2

consensus_4395#1 length = 400 sequences # 1

consensusID : consensus_4395#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 428
fasta sequence

                              [AATATTGTCAATATTATCCAAAACTCATACAATGGACTACAGTGCAAAGTGGTGCATGGAGGACAGCTGCTTTTCCAGTAAGGACCGGAGTCAAACAAGGCTGTCTACTCTCCCCATTTCTCTTCCTTCTAGTGCCTTCCTAGATTATGAAGAATTCGACATCTGACGGGAAATACGGAATACAATGGACTTCTCAGATTTTCTCAGATCTTTCTGTAGTATCTTAGTGAGGTGTTCTTTCCCGTCCGTCAGCACTTGGTTCTCCCCTGAAATCTTCCCAAATAGAACGTAGAGCATCTGTGCAGTTTTGTGTCTGTTTCCATTGCTTCAGCTGGTATATTTTCAGGACCTGCTGCTTTCTCACTCTTGATTTTTCTAATGGTTATCCTGATTTCTTTGATCTTTGGTGGAATGACATCTATAGGAAT]

[+] EMBL CD177844             [AATATTGTCAATATTATCCAAAACTCATACAATGGACTACAGTGCAAAGTGGTGCATGGAGGACAGCTGCTTTTCCAGTAAGGACCGGAGTCAAACAAGGCTGTCTACTCTCCCCATTTCTCTTCCTTCTAGTGCCTTCC                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD149619             [                                                                          CCAGTAAGGACCGGAGTCAGACAAGGCTGTCTACTCTCCCCATTCCTCTTCCTTCTAGTGATTGACTAGATTATGAAGAATTCGACATCTGACGGGAAATACGGAATACAATGGACTTCTCAGATTTTCTCAGATCTTTCTGTAGTATCTTAGTGAGGTGTTCTTTCCCGTCCGTCAGCACTTGGTTCTCCCCTGAAATCTTCCCAAATAGAACGTAGAGCATCTGTGCAGTTTTGTGTCTGTTTCCATTGCTTCAGCTGGTATATTTTCAGGACCTGCTGCTTTCTCACTCTTGATTTTTCTAATGGTTATCCTGATTTCTTTGATCTTTGGTGGAATGACATCTATAGGAAT]




>consensus_4395#0
AATATTGTCAATATTATCCAAAACTCATACAATGGACTACAGTGCAAAGTGGTGCATGGA
GGACAGCTGCTTTTCCAGTAAGGACCGGAGTCAAACAAGGCTGTCTACTCTCCCCATTTC
TCTTCCTTCTAGTGCCTTCCTAGATTATGAAGAATTCGACATCTGACGGGAAATACGGAA
TACAATGGACTTCTCAGATTTTCTCAGATCTTTCTGTAGTATCTTAGTGAGGTGTTCTTT
CCCGTCCGTCAGCACTTGGTTCTCCCCTGAAATCTTCCCAAATAGAACGTAGAGCATCTG
TGCAGTTTTGTGTCTGTTTCCATTGCTTCAGCTGGTATATTTTCAGGACCTGCTGCTTTC
TCACTCTTGATTTTTCTAATGGTTATCCTGATTTCTTTGATCTTTGGTGGAATGACATCT
ATAGGAAT

consensusID : consensus_4395#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [ACTTTGCACTGTAGTCCTTCGTATGAGTTTTGGATAATGTTGACAATCTTTTGATGAACTCCATAGTGTCGAAGAAGTTTCCATAATGTTCTCCTGTCCACGCTGTCAAACGCCTTCTCATAGTCAATAAAGTTTCATCAGTGACATCAATCCTTGAAGTCACTAACTTCTAGTCTGAGCCATGTTGGGGTGAGCGTAACTATCGTAATCAATGGTTGGAGACTCCGGGTGATCTCCACCTTTTAGCATGCTAGCCGGAATACCATCTGGTCCATTAGTGTAGGAGTGCTTCAGTGTACTAATTGCCTTAGAGATATTTTTTACATTGAAGTCTACATTAGTAATTTCACAGGGAGGTGATGGGATTAGTTCTGAATCATTTAGTGGTTTTTCGTCAGTT]

[+] EMBL CD096700             [ACTTTGCACTGTAGTCCTTCGTATGAGTTTTGGATAATGTTGACAATCTTTTGATGAACTCCATAGTGTCGAAGAAGTTTCCATAATGTTCTCCTGTCCACGCTGTCAAACGCCTTCTCATAGTCAATAAAGTTTCATCAGTGACATCAATCCTTGAAGTCACTAACTTCTAGTCTGAGCCATGTTGGGGTGAGCGTAACTATCGTAATCAATGGTTGGAGACTCCGGGTGATCTCCACCTTTTAGCATGCTAGCCGGAATACCATCTGGTCCATTAGTGTAGGAGTGCTTCAGTGTACTAATTGCCTTAGAGATATTTTTTACATTGAAGTCTACATTAGTAATTTCACAGGGAGGTGATGGGATTAGTTCTGAATCATTTAGTGGTTTTTCGTCAGTT]




>consensus_4395#1
ACTTTGCACTGTAGTCCTTCGTATGAGTTTTGGATAATGTTGACAATCTTTTGATGAACT
CCATAGTGTCGAAGAAGTTTCCATAATGTTCTCCTGTCCACGCTGTCAAACGCCTTCTCA
TAGTCAATAAAGTTTCATCAGTGACATCAATCCTTGAAGTCACTAACTTCTAGTCTGAGC
CATGTTGGGGTGAGCGTAACTATCGTAATCAATGGTTGGAGACTCCGGGTGATCTCCACC
TTTTAGCATGCTAGCCGGAATACCATCTGGTCCATTAGTGTAGGAGTGCTTCAGTGTACT
AATTGCCTTAGAGATATTTTTTACATTGAAGTCTACATTAGTAATTTCACAGGGAGGTGA
TGGGATTAGTTCTGAATCATTTAGTGGTTTTTCGTCAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4395#0      AATATTGTCAATATTATCCAAAACTCATACAATGGACTACAGTGCAAAGTGGTGCATGGA 60
consensus_4395#1      ---------------------ACTTTGCACTGTAGTCCTTCGTATGA-GTTTTGGATA-A 37
                                           *  *   **  * * *    **   * **  ** **  *

consensus_4395#0      GGACAGCTGCTTTTCCAGTAAGGAC-CGGAGTCAAACAAGGCTGTCTACTCTCCCCATTT 119
consensus_4395#1      TGTTGACAATCTTTTGATGAACTCCATAGTGTCGAAGAAGTTTCCATAATGTTCTCCTGT 97
                       *    *    ***  *  **   *   * *** ** ***  *   ** * * * * * *

consensus_4395#0      CTCTTCCTTCTAGTGCCTTCCTAGATTATGAAGAATTCGACATCTGACGGGAAATACGGA 179
consensus_4395#1      CCACGCTGTCAAACGCCTTCTCATAGTCAATAAAGTTTCATCAGTGACATCAATCCTTGA 157
                      *    *  ** *  ******  * * *    * * **  *    ****   **     **

consensus_4395#0      ATACAATGGACTTC--TCAGATTTTCTCAGATCTTTCTGTAG-TATCTTAGTGAGGTGTT 236
consensus_4395#1      AGTCACTAACTTCTAGTCTGAGCCATGTTGGGGTGAGCGTAACTATCGTAATCAATGGTT 217
                      *  ** *    *    ** **        *   *    ***  **** ** * *   ***

consensus_4395#0      CTTTCCCGTCCGTCAGCACTTGGTTCTCCCCTGAAATCTTCCCAAATAGAACGTAGAGCA 296
consensus_4395#1      GGAGACTCCGGGTGATCTCCACCTTTTAGCATGCTAG---CCGGAATACCATCTGGTCCA 274
                           *     ** * * *    ** *  * **  *    **  ****  *  * *  **

consensus_4395#0      TCTGTGCAGTTTTGTGTCTGTTTCC--ATTGCTTCAGCTGGTATATTTTCAGGACCTGCT 354
consensus_4395#1      TTAGTGTAGGAGTGCTTCAGTGTACTAATTGCCTTAG---AGATATTTTTTACAT-TGAA 330
                      *  *** **   **  ** ** * *  ***** * **     *******    *  **  

consensus_4395#0      GCTTTCTCACTCTTGATTTTTCTAATGGTTATCCTGATT--TCTTTGATC-TTTGGTGGA 411
consensus_4395#1      GTCTAC--ATTAGTAATTTCACAGGGAGGTGATGGGATTAGTTCTGAATCATTTAGTGGT 388
                      *  * *  * *  * ****  *     * *     ****  *  *  *** *** **** 

consensus_4395#0      ATGACATCTATAGGAAT 428
consensus_4395#1      TTTTCGTCAGTT----- 400
                       *  * **  *