cluster # 44

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Schistosoma mansoni
cluster # 44 cluster # 44 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_44#0 length = 539 sequences # 1

consensus_44#1 length = 423 sequences # 1

consensusID : consensus_44#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence

                              [CAACCTCAACAAGTCAATATGCGACCGGATTGTTCCAAATGTTATTACGCTAAAATATATCATGTACCATTCATAGATTTCAGCTTTTCATTGTATGATCTAAATTTATCAGTTTTAAACTTATTCCTAAAACACAGTCTGATAATTAAAACAAAACCCAGAGCTGAACGAGATTTTTAAGTGGGGAAAATATAAAAAAAAACCACTCGATATTTGAAAGAAATTATGGCATAAAGTAAAGTTTAAAATCTTAATCGATAAAAAGCTCTTTTATAAAACAAAACAATTTAGCGTAGCCATGTGGTTTATGCTACATATGTCGACAGACATAAGTAATATATTATACCAATCAGAAGTGGAATGCCCGGCAGCAAAAGGTTGGGAAGGCCTAATCGAAGAGAACGGGAACGGAGAGTAGTTGCTACGGCAAAGAAGGAACGACGAAGTCAGAGATATTTGATGGAGGGTTTGAAATGAAGTACTGGACGTATGGTTTTTATATTTTACCAAAGAACTCTGTAATTNTATATTAAAATACA]

[+] EMBL CD122744             [CAACCTCAACAAGTCAATATGCGACCGGATTGTTCCAAATGTTATTACGCTAAAATATATCATGTACCATTCATAGATTTCAGCTTTTCATTGTATGATCTAAATTTATCAGTTTTAAACTTATTCCTAAAACACAGTCTGATAATTAAAACAAAACCCAGAGCTGAACGAGATTTTTAAGTGGGGAAAATATAAAAAAAAACCACTCGATATTTGAAAGAAATTATGGCATAAAGTAAAGTTTAAAATCTTAATCGATAAAAAGCTCTTTTATAAAACAAAACAATTTAGCGTAGCCATGTGGTTTATGCTACATATGTCGACAGACATAAGTAATATATTATACCAATCAGAAGTGGAATGCCCGGCAGCAAAAGGTTGGGAAGGCCTAATCGAAGAGAACGGGAACGGAGAGTAGTTGCTACGGCAAAGAAGGAACGACGAAGTCAGAGATATTTGATGGAGGGTTTGAAATGAAGTACTGGACGTATGGTTTTTATATTTTACCAAAGAACTCTGTAATTNTATATTAAAATACA]




>consensus_44#0
CAACCTCAACAAGTCAATATGCGACCGGATTGTTCCAAATGTTATTACGCTAAAATATAT
CATGTACCATTCATAGATTTCAGCTTTTCATTGTATGATCTAAATTTATCAGTTTTAAAC
TTATTCCTAAAACACAGTCTGATAATTAAAACAAAACCCAGAGCTGAACGAGATTTTTAA
GTGGGGAAAATATAAAAAAAAACCACTCGATATTTGAAAGAAATTATGGCATAAAGTAAA
GTTTAAAATCTTAATCGATAAAAAGCTCTTTTATAAAACAAAACAATTTAGCGTAGCCAT
GTGGTTTATGCTACATATGTCGACAGACATAAGTAATATATTATACCAATCAGAAGTGGA
ATGCCCGGCAGCAAAAGGTTGGGAAGGCCTAATCGAAGAGAACGGGAACGGAGAGTAGTT
GCTACGGCAAAGAAGGAACGACGAAGTCAGAGATATTTGATGGAGGGTTTGAAATGAAGT
ACTGGACGTATGGTTTTTATATTTTACCAAAGAACTCTGTAATTNTATATTAAAATACA

consensusID : consensus_44#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [GGAACAATCCGGTCGCATATTGACTTGTTGAGGTTGTTTTTAATGCGAGGAATAAAAGTTAAACTAGAGAAATTAGAATATGTGAAAAAAGATAGTCAAGGAAAACAATATGAGTACTATGATTCATATTGTTTCTCATCTATTTTTCCCTTATCCATGCATATTGGTTGTTTTTTGGTCTTCCCATTGATGTTTAGGACTGCAACTGACCAATCTCTTTTGGCTGATGTGCATCCTGTACGGAATGCCTCGATATATTGCCGTTCGGTCACAGAAATTTTAAGCATAAGTGAATGGTAGCTAGCAATGGAATCCAGGACGCGCGTTTCGTCCTATGTGAGACTTGTCGGCTGGGTGTTTTTGAATTCCATAGTTGATATTCACTCCCGGGATATAGGATGCAGGCACATTTCACTGAGTCCC]

[+] EMBL CD120192             [GGAACAATCCGGTCGCATATTGACTTGTTGAGGTTGTTTTTAATGCGAGGAATAAAAGTTAAACTAGAGAAATTAGAATATGTGAAAAAAGATAGTCAAGGAAAACAATATGAGTACTATGATTCATATTGTTTCTCATCTATTTTTCCCTTATCCATGCATATTGGTTGTTTTTTGGTCTTCCCATTGATGTTTAGGACTGCAACTGACCAATCTCTTTTGGCTGATGTGCATCCTGTACGGAATGCCTCGATATATTGCCGTTCGGTCACAGAAATTTTAAGCATAAGTGAATGGTAGCTAGCAATGGAATCCAGGACGCGCGTTTCGTCCTATGTGAGACTTGTCGGCTGGGTGTTTTTGAATTCCATAGTTGATATTCACTCCCGGGATATAGGATGCAGGCACATTTCACTGAGTCCC]




>consensus_44#1
GGAACAATCCGGTCGCATATTGACTTGTTGAGGTTGTTTTTAATGCGAGGAATAAAAGTT
AAACTAGAGAAATTAGAATATGTGAAAAAAGATAGTCAAGGAAAACAATATGAGTACTAT
GATTCATATTGTTTCTCATCTATTTTTCCCTTATCCATGCATATTGGTTGTTTTTTGGTC
TTCCCATTGATGTTTAGGACTGCAACTGACCAATCTCTTTTGGCTGATGTGCATCCTGTA
CGGAATGCCTCGATATATTGCCGTTCGGTCACAGAAATTTTAAGCATAAGTGAATGGTAG
CTAGCAATGGAATCCAGGACGCGCGTTTCGTCCTATGTGAGACTTGTCGGCTGGGTGTTT
TTGAATTCCATAGTTGATATTCACTCCCGGGATATAGGATGCAGGCACATTTCACTGAGT
CCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_44#0      CAACCTCAACAAGTCAATATGCGACCGGATTGTTCCAAATGTTATTACGCTAAAATATAT 60
consensus_44#1      ------------------------------------------------------------
                                                                                

consensus_44#0      CATGTACCATTCATAGATTTCAGCTTTTCATTGTATGATCTAAATTTATCAGTTTTAAAC 120
consensus_44#1      --------------------------GGAACAATCCGGTCGCATATTGACT-TGTTGAGG 33
                                                 *   *  * **  *  **  *  * ** *  

consensus_44#0      TTATTCCTAAAACACAGTCTGATAATTAAAACAAAACCCAGAGCTGAACGAGATTTTTAA 180
consensus_44#1      TTGTTTTTAATGCGAGGAATAAAAGTTAAA-------CTAGAGA-AATTAGAATATGTGA 85
                    ** **  ***  *   *  * * * *****       * ****   *     ** * * *

consensus_44#0      GTGGGGAAAATATAAAAAAAAACCACTCGATATTTGAAAGAAATTATGGCATAAAGTAAA 240
consensus_44#1      AAAAAGATAGTCAAGGAAAACAATATGAGTACTATGATTCATATTGTTTCTCA---TCTA 142
                         ** * *  *  **** *  *   *   * ***   * *** *  *  *   *  *

consensus_44#0      GTTTAAAATCTTAATCGATAAAAA--GCTCTTTTATAAAACAAAACAATTTAGCGTAGCC 298
consensus_44#1      TTTTT---CCCTTATCCATGCATATTGGTTGTTTTTTGGTCTTCCCATTGATGTTTAGGA 199
                     ***     * * *** **  * *  * *  *** *    *    ** *   *  ***  

consensus_44#0      ATGTGGTTTATGCTACATATGTCGACAGACATAAGTAATATATTATACCAATCAGAAGTG 358
consensus_44#1      CTGCAACTGAC-CAATCTCTTTTGGCTGATGTGCATCCTGTACGGAATGCCTCGATATAT 258
                     **    * *  * *  * * * * * **  *   *  * **    *    **   *   

consensus_44#0      GAATGCCCGGCAGCAAAAGGTTGGGAAGGCCTAATCGAAGAGAACGGGAACGGAGAGTAG 418
consensus_44#1      TGCCGTTCGGTCACAGAAATTTT---AAGCAT-----AAGTGAATGGTAGCTAGCAATGG 310
                        *  ***   ** **  **    * ** *     *** *** ** * *    * * *

consensus_44#0      TTGCTACGGCAAAGAAGGAACGACGAAGTCAGAGATATTTGATGGAGGGTTTGAAATGAA 478
consensus_44#1      AATCCAGGACGCGCGTTTCGTC-CTATGTGAGACTTGTCGGCTGGGTGTTTTTGAATTCC 369
                       * * * *             * * ** ***  * *  * ***  * ***  ***   

consensus_44#0      GTACTGGACGTATGGTTTTTATATTTTACCAAAGAACTCTGTAATTNTATATTAAAATAC 538
consensus_44#1      ATAGTTGATATTCACTCCCGGGATAT------AGGATGCAGGCACATTTCACTGAGTCCC 423
                     ** * **  *    *      ** *      ** *  * *  *   *  * * *    *

consensus_44#0      A 539
consensus_44#1      -