cluster # 4404

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Schistosoma mansoni
cluster # 4404 cluster # 4404 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4404#0 length = 220 sequences # 2

consensus_4404#1 length = 165 sequences # 1

consensusID : consensus_4404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 220
fasta sequence

                              [CATATGCAAATGATTTTAGAGCTTATTTTTGATTGAAACTCTGACTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAACAGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGC]

[+] EMBL CD200082             [CATATGCAAATGATTTTAGAGCTTATTTTTGATTGAAACTCTGACTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAACAGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGC]
[+] EMBL CD200103             [CATATGCAAATGATTTTAGAGCTTATTTTTGATTGAAACTCTGACTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGAGTTAGCCCTGGCATTGATGGACTCTCAGCTGATCCAACTTTCTTTTGAAACAGTCGACGGATG                                                                      ]




>consensus_4404#0
CATATGCAAATGATTTTAGAGCTTATTTTTGATTGAAACTCTGACTTCAGTTTCAGTTTG
GAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGAT
CCAACTTTCTTTTGAAACAGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGAAT
TCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGC

consensusID : consensus_4404#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 165
fasta sequence

                              [GATCTGTACGCGAACACTGTGTTGTCAGGTGGTACGACAAATGTTCCCAGGTATTGCTGATCGTATGCAGAAAGAGATCANAGCATTGGCACCGAACACAATGAAGATCAAGATAGAGTGGTGCAGCCTGAACTGCGTAAAAATTGCGCGTTCGCATTCGTGCGG]

[+] EMBL SMAA28844            [GATCTGTACGCGAACACTGTGTTGTCAGGTGGTACGACAAATGTTCCCAGGTATTGCTGATCGTATGCAGAAAGAGATCANAGCATTGGCACCGAACACAATGAAGATCAAGATAGAGTGGTGCAGCCTGAACTGCGTAAAAATTGCGCGTTCGCATTCGTGCGG]




>consensus_4404#1
GATCTGTACGCGAACACTGTGTTGTCAGGTGGTACGACAAATGTTCCCAGGTATTGCTGA
TCGTATGCAGAAAGAGATCANAGCATTGGCACCGAACACAATGAAGATCAAGATAGAGTG
GTGCAGCCTGAACTGCGTAAAAATTGCGCGTTCGCATTCGTGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4404#0      CATATGCAAATGATTTTAGAGCTTATTTTTGATTGAA-ACTCTGACTTCAGTTTCAGTTT 59
consensus_4404#1      -----------------------GATCTGTACGCGAACACTGTGTTGTCAGGTGGTACGA 37
                                              ** * *    *** *** **   **** *       

consensus_4404#0      GGAAAGGACAGGAGGCTTGATGGCC-TGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTG 118
consensus_4404#1      CAAATGTTCCCAGGTATTGCTGATCGTATGCAGAA---AGAGATCANAGCATTGGCACCG 94
                        ** *  *    *  *** **  * * **         *  ** *  *  *     * *

consensus_4404#0      ATCCAACTTTCTTTTGAAACAGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGA 178
consensus_4404#1      AACACAATGAAGATCAAGATAG---AGTGGTGCAGCCTGAACTGCGTA--AAAATTGCGC 149
                      * *  * *     *  * * **   *  * ** ***** ***  ***    *  *   * 

consensus_4404#0      ATTC-CACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGC 220
consensus_4404#1      GTTCGCATTCGTGCGG--------------------------- 165
                       *** ** ****