cluster # 4413

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Schistosoma mansoni
cluster # 4413 cluster # 4413 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4413#0 length = 348 sequences # 1

consensus_4413#1 length = 342 sequences # 2

consensusID : consensus_4413#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [AGTGGATAGGACACACATTGAGGGAATCACCCAACTGCGTCACAAGACAAGCTCTCACATGGAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATGGAGACAGACATGAGAAGAATGAATAGAAGTTGGATAGAGCTAGAAAGGAAGGAAGACAGAGTGGGTTGGAGAATGCTGTTCGGCAGCCTATGCTTCATCAGGAGTAAAAGGCATAAGTAAGTAATTAATATATGAAGTTATTGACCTACAATTGGTCATAGTCAAGGAGATGCACTCACTCCTTATTCCTTAGCATATAATTCATTCACTGGTAACTATTCATTAAAAT]

[+] EMBL CD149518             [AGTGGATAGGACACACATTGAGGGAATCACCCAACTGCGTCACAAGACAAGCTCTCACATGGAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATGGAGACAGACATGAGAAGAATGAATAGAAGTTGGATAGAGCTAGAAAGGAAGGAAGACAGAGTGGGTTGGAGAATGCTGTTCGGCAGCCTATGCTTCATCAGGAGTAAAAGGCATAAGTAAGTAATTAATATATGAAGTTATTGACCTACAATTGGTCATAGTCAAGGAGATGCACTCACTCCTTATTCCTTAGCATATAATTCATTCACTGGTAACTATTCATTAAAAT]




>consensus_4413#0
AGTGGATAGGACACACATTGAGGGAATCACCCAACTGCGTCACAAGACAAGCTCTCACAT
GGAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATGG
AGACAGACATGAGAAGAATGAATAGAAGTTGGATAGAGCTAGAAAGGAAGGAAGACAGAG
TGGGTTGGAGAATGCTGTTCGGCAGCCTATGCTTCATCAGGAGTAAAAGGCATAAGTAAG
TAATTAATATATGAAGTTATTGACCTACAATTGGTCATAGTCAAGGAGATGCACTCACTC
CTTATTCCTTAGCATATAATTCATTCACTGGTAACTATTCATTAAAAT

consensusID : consensus_4413#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 342
fasta sequence

                              [CAGGATTTTCGATACAAATGTCAAGACAGTTCTACTGTATGGGGCGGAAATATGGAGAACTACGAATGCCATCATCTAGAAGATACAAGTGTTTATTAACAGCTGTTTACGCAAGGTACTTCGGATCCGTTGGCCAGACACTATCAGCAGCAAGTTACTGTGAGAGACAACAAACCAGATTCCAGTAGAGGAAGAAATCATGAAGAAGCACTGGAAGTTGATAGGACACACATTGAGGAAACCACCCAACTGCGTCACAAGACAAGCCCTCACACGGAATCCTGAAGGCCAAGGGAGAAGAGGAAGACCAGAGAGAACATTACGCCGAGAAATGGAAACAGA]

[+] EMBL CD089149             [CAGGATTTTCGATACAAATGTCAAGACAGTTCTACTGTATGGGGCGGAAATATGGAGAACTACGAATGCCATCATCTAGAAGATACAAGTGTTTATTAACAGCTGTTTACGCAAGGTACTTCGGATCCGTTGGCCAGACACTATCAGCAGCAAGTTACTGTGAGAGACAACAAACCAGATTCCAGTAGAGGAAGAAATCATGAAGAAGCACTGGAAGTTGATAGGACACACATTGAGGAAACCACCCAACTGCGTCACAAGACAAGCCCTCACACGGAATCCTGAAGGCCAAGGGAGAAGAGGAAGACCAGAGAGAACATTACGCCGAGAAATGGAAACAGA]
[+] EMBL CD089022             [CAGGATTTTCGATACAAATGTCAAGACAGTTCTACTGTATGGGGCGAAAATATGGAGAACTACGAATGCCATCATCTAGAAGATACAAGTGTTTATTAACAGCTGTTTACGCAAGGTACTTCGGATCCGTTGGCCAGACACTATCAGCAGCAAGTTACTGTGAGAGACAACAAACCAGATTCCAGTAGAGGAAGAAATCATGAAGAAGCACTGGAAGTTGATAGGACACACATTGAGGAAACCACTCAACTGCGTCACAAGACAAGCCCTCACACGGAATCCTGAAGGCCAAGGGAGAAGAGGAAGACCAGAGAGAACATTACGCCGAGAAATGGAAACAGA]




>consensus_4413#1
CAGGATTTTCGATACAAATGTCAAGACAGTTCTACTGTATGGGGCGGAAATATGGAGAAC
TACGAATGCCATCATCTAGAAGATACAAGTGTTTATTAACAGCTGTTTACGCAAGGTACT
TCGGATCCGTTGGCCAGACACTATCAGCAGCAAGTTACTGTGAGAGACAACAAACCAGAT
TCCAGTAGAGGAAGAAATCATGAAGAAGCACTGGAAGTTGATAGGACACACATTGAGGAA
ACCACCCAACTGCGTCACAAGACAAGCCCTCACACGGAATCCTGAAGGCCAAGGGAGAAG
AGGAAGACCAGAGAGAACATTACGCCGAGAAATGGAAACAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4413#0      -AGTGGATAGGACACACATTGAGGGAATCACCCAACTGCGTCACAAGACAAGCTCTCACA 59
consensus_4413#1      CAGGATTTTCGATACAAAT-GTCAAGACAGTTCTACTGTATGGGGCGGAAATATGGAGAA 59
                       **    *  ** *** ** *     *     * ****  *     *  **  *     *

consensus_4413#0      TG--GAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAA 117
consensus_4413#1      CTACGAATGCCATCATCTAGAAGATACAAGTGTTTATTAACAGCTGTTTACGCAAGGTAC 119
                          **** *      * * * ** *  **        ** * *   ******   * * 

consensus_4413#0      TGGAGACAGACATGAGAAGAATGAATAGAAGTTGGATAGAGCTAGAAAGGAAGGAAGACA 177
consensus_4413#1      TTCGGATCCGTTGGCCAGACACTATCAGCAGCAAGTTACTGT--GAGAGACAACAAACCA 177
                      *   **       *  *   *  *  ** **   * **  *   ** **  *  **  **

consensus_4413#0      GAGTGGGTTGGAGAATGCTGTTCGGCAGCCTATGCTTCATCAGGAG-TAAAAGGCATAAG 236
consensus_4413#1      GATTCCAGTAGAGGAAGAAATCATGAAG---AAGCACTGGAAGTTGATAGGACACACATT 234
                      ** *    * *** * *   *   * **   * **      **  * **  *  ** *  

consensus_4413#0      TAAGTAATTAATATATGAAGTTATT-GACCTACAATTGGTCATAGTCAAGGAGATGCACT 295
consensus_4413#1      GAGGAAACCACCCAACTGCGTCACAAGACAAGCCCTCACACGGAATCCTGAAGGCCAAGG 294
                       * * **  *    *    ** *   ***   *  *    *  * **  * **    *  

consensus_4413#0      CACTCCTTATTCCTTAGCATATAATTCATTCACTGGTAACTATTCATTAAAAT 348
consensus_4413#1      GAGAAGAGGAAGACCAGAGAGAACATTA--CGCCGAGAAATGGAAACAGA--- 342
                       *             **     *  * *  * * *  ** *    *   *