cluster # 4414

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Schistosoma mansoni
cluster # 4414 cluster # 4414 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4414#0 length = 377 sequences # 1

consensus_4414#1 length = 181 sequences # 2

consensusID : consensus_4414#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [AGCACGGTACCCTGGCTTCCACATCATCTCGTGTGTCCGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAG]

[+] EMBL CD067722             [AGCACGGTACCCTGGCTTCCACATCATCTCGTGTGTCCGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAG]




>consensus_4414#0
AGCACGGTACCCTGGCTTCCACATCATCTCGTGTGTCCGTGTTCGCTCCAGTCGAATTGG
ATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTG
TCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGG
AAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAG
AAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAAT
TGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGC
GTGTCGGTGAGATGGAG

consensusID : consensus_4414#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 181
fasta sequence

                              [GCCCGGTACCCTGCCTTCACCGACTGC-C-GAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGTAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACG]

[+] EMBL CD168605             [GCCCGGTACCCTGCCTTCACCGACTGC C GAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGTAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACG]
[+] EMBL CD168590             [GCCCGGTACCCTGCAATCACCGACTGCTCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGC                                           ]




>consensus_4414#1
GCCCGGTACCCTGCCTTCACCGACTGCCGAACGTGTGTCTGTGTTCGCTCCAGTCGAATT
GTAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCG
TGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGAC
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4414#0      AGCACGGTACCCTGGCTTCCACATCATCT---CGTGTGTCCGTGTTCGCTCCAGTCGAAT 57
consensus_4414#1      -GCCCGGTACCCTGCCTTCACCGACTGCCGAACGTGTGTCTGTGTTCGCTCCAGTCGAAT 59
                       ** ********** ****  *  *  *    ******** *******************

consensus_4414#0      TGGATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGC 117
consensus_4414#1      TGTAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGC 119
                      ** * *******************************************************

consensus_4414#0      GTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGA 177
consensus_4414#1      GTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGA 179
                      ************************************************************

consensus_4414#0      CGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACG 237
consensus_4414#1      CG---------------------------------------------------------- 181
                      **                                                          

consensus_4414#0      CAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCG 297
consensus_4414#1      ------------------------------------------------------------
                                                                                  

consensus_4414#0      AATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTG 357
consensus_4414#1      ------------------------------------------------------------
                                                                                  

consensus_4414#0      AGCGTGTCGGTGAGATGGAG 377
consensus_4414#1      --------------------