cluster # 4419

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Schistosoma mansoni
cluster # 4419 cluster # 4419 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4419#0 length = 703 sequences # 2

consensus_4419#1 length = 486 sequences # 1

consensusID : consensus_4419#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 703
fasta sequence

                              [TATGTTAAAGGAATCTGAACGCAGTATGATGGGCCAGCGTTTTTATGGTTTGCCGGGCAGTATGACTCCACATCCTTCGAGTGGTTCAAGTGGGTATTTCCAGAATCGCAATTACCCTACCTCTATCAATTTTGTCTCTTTGAGCGAAACCGAAAATAAGCAGTCACCGTCTATTTCTTCGCCTTCACTCAGAACTCCTATCTCGCCATCAGCAAATGACAGAAGTGTTCATTCTGTTAACGTGTCGTCTTTGC-AAAGTGAAACTCAAGAGTTAACTAAACAACATAACACAGTTAGTATTCCTGTGAATCGTGAGCAACGGTCATTTGAGAAACAAAGACGTGACTTATTGACTGGCCTGGAACATGGGGGTGGTGCTCATCGTGGCAACTCAATCGCACCATACACGGAAGATTGGCCGAGTGCAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTACATTTCAAGGTACGATTCGAT]

[+] EMBL CD094546             [TATGTTAAAGGAATCTGAACGCAGTATGATGGGCCAGCGTTTTTATGGTTTGCCGGGCAGTATGACTCCACATCCTTCGAGTGGTTCAAGTGGGTATTTCCAGAATCGCAATTACCCTACCTCTATCAATTTTGTCTCTTTGAGCGAAACCGAAAATAAGCAGTCACCGTCTATTTCTTCGCCTTCACTCAGAACTCCTATCTCGCCATCAGCAAATGACAGAAGTGTTCATTCTGTTAACGTGTCGTCTTTGC AAAGTGAAACTCAAGAGTTAACTAAACAACATAACACAGTTAGTATTCCTGTGAATCGTGAGCAACGGTCATTTGAGAAACAAAGACGTGACTTATTGACTGGCCTGGAACATGGGGGTGGTGCTCATCGTGGCAACTCAATCGCACCATACACGGAAGATTGGCCGAGTGCAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCT                                                                                 ]
[-] EMBL CD094684             [                                                                                                                                                                                                                 CAGCAAATGACAGAAGTGTTCATTCTGTTAACGTGTCATC TTGCAAAAGTGAAACTCAAGAGTTAACTAAACAACATAACACAGTTAGTATTCCTGTGAATCGTGAGCAACGGTCATTTGAGAAACAAAGACGTGACTTATTGACTGGCCTGGAACATGGGGGTGGTGCTCATCGTGGCAACTCAATCGCACCATACACGGAAGACTGGCCGAGTACAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTCGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTACATTTCAAGGTACGATTCGAT]




>consensus_4419#0
TATGTTAAAGGAATCTGAACGCAGTATGATGGGCCAGCGTTTTTATGGTTTGCCGGGCAG
TATGACTCCACATCCTTCGAGTGGTTCAAGTGGGTATTTCCAGAATCGCAATTACCCTAC
CTCTATCAATTTTGTCTCTTTGAGCGAAACCGAAAATAAGCAGTCACCGTCTATTTCTTC
GCCTTCACTCAGAACTCCTATCTCGCCATCAGCAAATGACAGAAGTGTTCATTCTGTTAA
CGTGTCGTCTTTGCAAAGTGAAACTCAAGAGTTAACTAAACAACATAACACAGTTAGTAT
TCCTGTGAATCGTGAGCAACGGTCATTTGAGAAACAAAGACGTGACTTATTGACTGGCCT
GGAACATGGGGGTGGTGCTCATCGTGGCAACTCAATCGCACCATACACGGAAGATTGGCC
GAGTGCAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACG
TTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGA
AAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAAT
GGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGA
AGTAGGTGAGGATGGCAAGGTACATTTCAAGGTACGATTCGAT

consensusID : consensus_4419#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [CGTTCGCTCTGCTGCTTGGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGAGAAAATCCATTCGAATTAATGCACCAAATGGATCGTCAAATCCAAGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGGCTACCGGTTCAGTGAACGACTTTCTGATAGACGCCTACGAATTATGTGAGGATGGCAAGGTACATTTCGAGGTACGATTCGATGCTCAAGGTTTCTCTCCTCAGGACATCAATGCGACGTCGAGTGATAACCGTGTGACGGTACACGCAAAGAAGGAGACGACTACCGATGGCCCGAAGTGTACTCGGGAGTTCTGTCATATGGTGCAACTGCCGAAGAGTATTGATGATAGTCAACTGCAATGTCGCATGACTGATGTGTTCATGGACTGTCGTATGTGGATGATGGA]

[+] EMBL CD149045             [CGTTCGCTCTGCTGCTTGGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGAGAAAATCCATTCGAATTAATGCACCAAATGGATCGTCAAATCCAAGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGGCTACCGGTTCAGTGAACGACTTTCTGATAGACGCCTACGAATTATGTGAGGATGGCAAGGTACATTTCGAGGTACGATTCGATGCTCAAGGTTTCTCTCCTCAGGACATCAATGCGACGTCGAGTGATAACCGTGTGACGGTACACGCAAAGAAGGAGACGACTACCGATGGCCCGAAGTGTACTCGGGAGTTCTGTCATATGGTGCAACTGCCGAAGAGTATTGATGATAGTCAACTGCAATGTCGCATGACTGATGTGTTCATGGACTGTCGTATGTGGATGATGGA]




>consensus_4419#1
CGTTCGCTCTGCTGCTTGGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTG
AGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGAGAAAA
TCCATTCGAATTAATGCACCAAATGGATCGTCAAATCCAAGATATCCGAGAGAGAATGGG
GTCATTGGATGTGCCGGCTACCGGTTCAGTGAACGACTTTCTGATAGACGCCTACGAATT
ATGTGAGGATGGCAAGGTACATTTCGAGGTACGATTCGATGCTCAAGGTTTCTCTCCTCA
GGACATCAATGCGACGTCGAGTGATAACCGTGTGACGGTACACGCAAAGAAGGAGACGAC
TACCGATGGCCCGAAGTGTACTCGGGAGTTCTGTCATATGGTGCAACTGCCGAAGAGTAT
TGATGATAGTCAACTGCAATGTCGCATGACTGATGTGTTCATGGACTGTCGTATGTGGAT
GATGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4419#0      TATGTTAAAGGAATCTGAACGCAGTATGATGGGCCAGCGTTTTTATGGTTTGCCGGGCAG 60
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      TATGACTCCACATCCTTCGAGTGGTTCAAGTGGGTATTTCCAGAATCGCAATTACCCTAC 120
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      CTCTATCAATTTTGTCTCTTTGAGCGAAACCGAAAATAAGCAGTCACCGTCTATTTCTTC 180
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      GCCTTCACTCAGAACTCCTATCTCGCCATCAGCAAATGACAGAAGTGTTCATTCTGTTAA 240
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      CGTGTCGTCTTTGCAAAGTGAAACTCAAGAGTTAACTAAACAACATAACACAGTTAGTAT 300
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      TCCTGTGAATCGTGAGCAACGGTCATTTGAGAAACAAAGACGTGACTTATTGACTGGCCT 360
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      GGAACATGGGGGTGGTGCTCATCGTGGCAACTCAATCGCACCATACACGGAAGATTGGCC 420
consensus_4419#1      ------------------------------------------------------------
                                                                                  

consensus_4419#0      GAGTGCAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACG 480
consensus_4419#1      -CGTTCGCT---CTGCTGCTTGGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACG 56
                        ** *  *   *  ***  * **************************************

consensus_4419#0      TTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTG-G 539
consensus_4419#1      TTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGAG 116
                      ********************************************************** *

consensus_4419#0      AAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAA 599
consensus_4419#1      AAAATCCATTCGAATTAATGCACCAAATGGATCGTCAAATCCAAGATATCCGAGAGAGAA 176
                      ************ ****************************** ****************

consensus_4419#0      TGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACG 659
consensus_4419#1      TGGGGTCATTGGATGTGCCGGCTACCGGTTCAGTGAACGACTTTCTGATAGACGCCTACG 236
                      ******************** ***************************  **********

consensus_4419#0      AAGTAGGTGAGGATGGCAAGGTACATTTCAAGGTACGATTCGAT---------------- 703
consensus_4419#1      AATTATGTGAGGATGGCAAGGTACATTTCGAGGTACGATTCGATGCTCAAGGTTTCTCTC 296
                      ** ** *********************** **************                

consensus_4419#0      ------------------------------------------------------------
consensus_4419#1      CTCAGGACATCAATGCGACGTCGAGTGATAACCGTGTGACGGTACACGCAAAGAAGGAGA 356
                                                                                  

consensus_4419#0      ------------------------------------------------------------
consensus_4419#1      CGACTACCGATGGCCCGAAGTGTACTCGGGAGTTCTGTCATATGGTGCAACTGCCGAAGA 416
                                                                                  

consensus_4419#0      ------------------------------------------------------------
consensus_4419#1      GTATTGATGATAGTCAACTGCAATGTCGCATGACTGATGTGTTCATGGACTGTCGTATGT 476
                                                                                  

consensus_4419#0      ----------
consensus_4419#1      GGATGATGGA 486