These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [GACTTTTATTTACAAATGTACATAAAATGAATATTATAATCATCATTATTTATGTACATAAAATGTAACTTTTATCCAATGTATGCCAATTCATTTCAAATGATAAATTAATTTAGTTTCAATAAGTTGTTAGGCTAGCAACATATTTAATCACTAGAAGAAAATACAAAGAAAGAAACAGTAATAATGAATTTGATTCAGAGTAATATAGAAAATATATAGAAGAAAATTGATGATTAAAAATACTGTTATATCTTGTGGCCGCCTGAATGCTCTGTTAATGTATAACGTGATAATACCGTCAATTACACACCAGTGTGATTTATCGATTGAACCAATGACACACAAAACCCGTATGAGTAGTCTAGAGTACTTATCGGTCCTGCTTTTCACCTAGTTAAGTCCAGAACACCAATAAAAGCCTCTGCAATATGAATCATTATTCTCAAACATAATGGGTTTATATACAAACCAAATTAACTGACCACATCGTACCATAAAATAGAAAATAACATTTGTACAAGATTTAGCCAAATGTGTCTGTGAATAGAG] [+] EMBL CD075843 [GACTTTTATTTACAAATGTACATAAAATGAATATTATAATCATCATTATTTATGTACATAAAATGTAACTTTTATCCAATGTATGCCAATTCATTTCAAATGATAAATTAATTTAGTTTCAATAAGTTGTTAGGCTAGCAACATATTTAATCACTAGAAGAAAATACAAAGAAAGAAACAGTAATAATGAATTTGATTCAGAGTAATATAGAAAATATATAGAAGAAAATTGATGATTAAAAATACTGTTATATCTTGTGGCCGCCTGAATGCTCTGTTAATGTATAACGTGATAATACCGTCAATTACACACCAGTGTGATTTATCGATTGAACCAATGACACACAAAACCCGTATGAGTAGTCTAGAGTACTTATCGGTCCTGCTTTTCACCTAGTTAAGTCCAGAACACCAATAAAAGCCTCTGCAATATGAATCATTATTCTCAAACATAATGGGTTTATATACAAACCAAATTAACTGACCACATCGTACCATAAAATAGAAAATAACATTTGTACAAGATTTAGCCAAATGTGTCTGTGAATAGAG] consensusID : consensus_4421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [TATCAACCCTCATCATCCAGTCAGTCCAAACAGATTCTCTATTGAGTGCAAGAAAAATGTTATGAACAAAGTCACACTGAATGTAACTTGCAAATATGAGGATCCAACGCTATTTCGTGGGAGAGGACAAATTCGATAAATTTAAAATCCGGATATCAGCTCCGGATCTCTCAAAAAATGGAAGGTGTTGGATCCCGTGTAGAATTATGAATGGTAACTTTGAGAACTATTTATGGACCAATATGATACATATATTTCCTATTGCATAATT] [+] EMBL CD157531 [TATCAACCCTCATCATCCAGTCAGTCCAAACAGATTCTCTATTGAGTGCAAGAAAAATGTTATGAACAAAGTCACACTGAATGTAACTTGCAAATATGAGGATCCAACGCTATTTCGTGGGAGAGGACAAATTCGATAAATTTAAAATCCGGATATCAGCTCCGGATCTCTCAAAAAATGGAAGGTGTTGGATCCCGTGTAGAATTATGAATGGTAACTTTGAGAACTATTTATGGACCAATATGATACATATATTTCCTATTGCATAATT] consensusID : consensus_4421#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence [ACCAACCAGGCAGACCACATCGCAACATAAAATAGAAAATAATATTTGTACAAGATTTGGCCAAATGTGGCTGTGAATGTGGGGAAAAGTAATTAATAGACTGAGGATAACTCAAGAACGGCAAATCATATAATAACAGTCTATGGGTCAAAATAAAGCTTATAGTATAAGAAACATGAATATGAATAGTTCAGTTATTTAACAATTATACAATAGGAAATATGCATATCATATTGGTCCATAAATAGTCCTCAAAAATTACCGTT] [+] EMBL CD098132 [ACCAACCAGGCAGACCACATCGCAACATAAAATAGAAAATAATATTTGTACAAGATTTGGCCAAATGTGGCTGTGAATGTGGGGAAAAGTAATTAATAGACTGAGGATAACTCAAGAACGGCAAATCATATAATAACAGTCTATGGGTCAAAATAAAGCTTATAGTATAAGAAACATGAATATGAATAGTTCAGTTATTTAACAATTATACAATAGGAAATATGCATATCATATTGGTCCATAAATAGTCCTCAAAAATTACCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4421#0 --------------GACTT--TTATTTACAAATGTAC---ATAAAATG-AATATTATAAT 40 consensus_4421#2 -----------ACCAACCAGGCAGACCACATCGCAAC---ATAAAATA-GAAAATAATAT 45 consensus_4421#1 TATCAACCCTCATCATCCAGTCAGTCCAAACAGATTCTCTATTGAGTGCAAGAAAAATGT 60 * * * * ** * * * * * * consensus_4421#0 CATCATTATTTATGTACATAAAATGTAACTTTTATCCAATGTATGCC----AATTCATTT 96 consensus_4421#2 TTGTACAAGATTTGGCC---AAATGTGGCTGTG----AATGTGGGGA----AAAGTAATT 94 consensus_4421#1 TATGAACAAAGTCACAC--TGAATGTAACTTGCA---AATATGAGGATCCAACGCTATTT 115 * * * ***** ** *** * * * * ** consensus_4421#0 CAAATGATAAAT-TAATTTAGTTTCAATAAG-TTGTTAGGCTAGCAACATATTTAATCAC 154 consensus_4421#2 AATAGACTGAGGATAACTCAAGAACGGCAAA-TCAT-ATAATAACAGTCTATG-GGTCAA 151 consensus_4421#1 CGTGGGAGAGGACAAATTCGATAAATTTAAAATCCGGATATCAGCTCCGGATCTCTCAAA 175 ** * ** * * * * ** * consensus_4421#0 TAGAAGAAAATACAAAGAAAGAAACAGTAATAATGAATTTGATTCAGAGTAATATAGAAA 214 consensus_4421#2 -AATAAAGCTTATAGTATAAGAAACATGAATA-TGAA--TAGTTCA--GTTATTTAACAA 205 consensus_4421#1 AAATGGAAGGTGTTGGATCCCGTGTAGAATTA-TGAA--TGGT------AACTTTGAGAA 226 * * * * * ** **** * * * * ** consensus_4421#0 ATATATAGAAGAAAATT-GATGATTAAAAATACTGTTATATCTTGTGGCCGCCTGAATGC 273 consensus_4421#2 TTATACAATAGGAAAT---ATGCATATCA-TATTGGTCCATAA-ATAGTCCTCAAAAATT 260 consensus_4421#1 CTATTTATGGACCAATATGATACATATATTTCCTATTGCATAATT--------------- 271 *** * *** ** ** * * * ** consensus_4421#0 TCTGTTAATGTATAACGTGATAATACCGTCAATTACACACCAGTGTGATTTATCGATTGA 333 consensus_4421#2 ACCGTT------------------------------------------------------ 266 consensus_4421#1 ------------------------------------------------------------ consensus_4421#0 ACCAATGACACACAAAACCCGTATGAGTAGTCTAGAGTACTTATCGGTCCTGCTTTTCAC 393 consensus_4421#2 ------------------------------------------------------------ consensus_4421#1 ------------------------------------------------------------ consensus_4421#0 CTAGTTAAGTCCAGAACACCAATAAAAGCCTCTGCAATATGAATCATTATTCTCAAACAT 453 consensus_4421#2 ------------------------------------------------------------ consensus_4421#1 ------------------------------------------------------------ consensus_4421#0 AATGGGTTTATATACAAACCAAATTAACTGACCACATCGTACCATAAAATAGAAAATAAC 513 consensus_4421#2 ------------------------------------------------------------ consensus_4421#1 ------------------------------------------------------------ consensus_4421#0 ATTTGTACAAGATTTAGCCAAATGTGTCTGTGAATAGAG 552 consensus_4421#2 --------------------------------------- consensus_4421#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||