cluster # 4421

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Schistosoma mansoni
cluster # 4421 cluster # 4421 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4421#0 length = 552 sequences # 1

consensus_4421#1 length = 271 sequences # 1
consensus_4421#2 length = 266 sequences # 1

consensusID : consensus_4421#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence

                              [GACTTTTATTTACAAATGTACATAAAATGAATATTATAATCATCATTATTTATGTACATAAAATGTAACTTTTATCCAATGTATGCCAATTCATTTCAAATGATAAATTAATTTAGTTTCAATAAGTTGTTAGGCTAGCAACATATTTAATCACTAGAAGAAAATACAAAGAAAGAAACAGTAATAATGAATTTGATTCAGAGTAATATAGAAAATATATAGAAGAAAATTGATGATTAAAAATACTGTTATATCTTGTGGCCGCCTGAATGCTCTGTTAATGTATAACGTGATAATACCGTCAATTACACACCAGTGTGATTTATCGATTGAACCAATGACACACAAAACCCGTATGAGTAGTCTAGAGTACTTATCGGTCCTGCTTTTCACCTAGTTAAGTCCAGAACACCAATAAAAGCCTCTGCAATATGAATCATTATTCTCAAACATAATGGGTTTATATACAAACCAAATTAACTGACCACATCGTACCATAAAATAGAAAATAACATTTGTACAAGATTTAGCCAAATGTGTCTGTGAATAGAG]

[+] EMBL CD075843             [GACTTTTATTTACAAATGTACATAAAATGAATATTATAATCATCATTATTTATGTACATAAAATGTAACTTTTATCCAATGTATGCCAATTCATTTCAAATGATAAATTAATTTAGTTTCAATAAGTTGTTAGGCTAGCAACATATTTAATCACTAGAAGAAAATACAAAGAAAGAAACAGTAATAATGAATTTGATTCAGAGTAATATAGAAAATATATAGAAGAAAATTGATGATTAAAAATACTGTTATATCTTGTGGCCGCCTGAATGCTCTGTTAATGTATAACGTGATAATACCGTCAATTACACACCAGTGTGATTTATCGATTGAACCAATGACACACAAAACCCGTATGAGTAGTCTAGAGTACTTATCGGTCCTGCTTTTCACCTAGTTAAGTCCAGAACACCAATAAAAGCCTCTGCAATATGAATCATTATTCTCAAACATAATGGGTTTATATACAAACCAAATTAACTGACCACATCGTACCATAAAATAGAAAATAACATTTGTACAAGATTTAGCCAAATGTGTCTGTGAATAGAG]




>consensus_4421#0
GACTTTTATTTACAAATGTACATAAAATGAATATTATAATCATCATTATTTATGTACATA
AAATGTAACTTTTATCCAATGTATGCCAATTCATTTCAAATGATAAATTAATTTAGTTTC
AATAAGTTGTTAGGCTAGCAACATATTTAATCACTAGAAGAAAATACAAAGAAAGAAACA
GTAATAATGAATTTGATTCAGAGTAATATAGAAAATATATAGAAGAAAATTGATGATTAA
AAATACTGTTATATCTTGTGGCCGCCTGAATGCTCTGTTAATGTATAACGTGATAATACC
GTCAATTACACACCAGTGTGATTTATCGATTGAACCAATGACACACAAAACCCGTATGAG
TAGTCTAGAGTACTTATCGGTCCTGCTTTTCACCTAGTTAAGTCCAGAACACCAATAAAA
GCCTCTGCAATATGAATCATTATTCTCAAACATAATGGGTTTATATACAAACCAAATTAA
CTGACCACATCGTACCATAAAATAGAAAATAACATTTGTACAAGATTTAGCCAAATGTGT
CTGTGAATAGAG

consensusID : consensus_4421#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [TATCAACCCTCATCATCCAGTCAGTCCAAACAGATTCTCTATTGAGTGCAAGAAAAATGTTATGAACAAAGTCACACTGAATGTAACTTGCAAATATGAGGATCCAACGCTATTTCGTGGGAGAGGACAAATTCGATAAATTTAAAATCCGGATATCAGCTCCGGATCTCTCAAAAAATGGAAGGTGTTGGATCCCGTGTAGAATTATGAATGGTAACTTTGAGAACTATTTATGGACCAATATGATACATATATTTCCTATTGCATAATT]

[+] EMBL CD157531             [TATCAACCCTCATCATCCAGTCAGTCCAAACAGATTCTCTATTGAGTGCAAGAAAAATGTTATGAACAAAGTCACACTGAATGTAACTTGCAAATATGAGGATCCAACGCTATTTCGTGGGAGAGGACAAATTCGATAAATTTAAAATCCGGATATCAGCTCCGGATCTCTCAAAAAATGGAAGGTGTTGGATCCCGTGTAGAATTATGAATGGTAACTTTGAGAACTATTTATGGACCAATATGATACATATATTTCCTATTGCATAATT]




>consensus_4421#1
TATCAACCCTCATCATCCAGTCAGTCCAAACAGATTCTCTATTGAGTGCAAGAAAAATGT
TATGAACAAAGTCACACTGAATGTAACTTGCAAATATGAGGATCCAACGCTATTTCGTGG
GAGAGGACAAATTCGATAAATTTAAAATCCGGATATCAGCTCCGGATCTCTCAAAAAATG
GAAGGTGTTGGATCCCGTGTAGAATTATGAATGGTAACTTTGAGAACTATTTATGGACCA
ATATGATACATATATTTCCTATTGCATAATT

consensusID : consensus_4421#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 266
fasta sequence

                              [ACCAACCAGGCAGACCACATCGCAACATAAAATAGAAAATAATATTTGTACAAGATTTGGCCAAATGTGGCTGTGAATGTGGGGAAAAGTAATTAATAGACTGAGGATAACTCAAGAACGGCAAATCATATAATAACAGTCTATGGGTCAAAATAAAGCTTATAGTATAAGAAACATGAATATGAATAGTTCAGTTATTTAACAATTATACAATAGGAAATATGCATATCATATTGGTCCATAAATAGTCCTCAAAAATTACCGTT]

[+] EMBL CD098132             [ACCAACCAGGCAGACCACATCGCAACATAAAATAGAAAATAATATTTGTACAAGATTTGGCCAAATGTGGCTGTGAATGTGGGGAAAAGTAATTAATAGACTGAGGATAACTCAAGAACGGCAAATCATATAATAACAGTCTATGGGTCAAAATAAAGCTTATAGTATAAGAAACATGAATATGAATAGTTCAGTTATTTAACAATTATACAATAGGAAATATGCATATCATATTGGTCCATAAATAGTCCTCAAAAATTACCGTT]




>consensus_4421#2
ACCAACCAGGCAGACCACATCGCAACATAAAATAGAAAATAATATTTGTACAAGATTTGG
CCAAATGTGGCTGTGAATGTGGGGAAAAGTAATTAATAGACTGAGGATAACTCAAGAACG
GCAAATCATATAATAACAGTCTATGGGTCAAAATAAAGCTTATAGTATAAGAAACATGAA
TATGAATAGTTCAGTTATTTAACAATTATACAATAGGAAATATGCATATCATATTGGTCC
ATAAATAGTCCTCAAAAATTACCGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4421#0      --------------GACTT--TTATTTACAAATGTAC---ATAAAATG-AATATTATAAT 40
consensus_4421#2      -----------ACCAACCAGGCAGACCACATCGCAAC---ATAAAATA-GAAAATAATAT 45
consensus_4421#1      TATCAACCCTCATCATCCAGTCAGTCCAAACAGATTCTCTATTGAGTGCAAGAAAAATGT 60
                                      *          * *      *   **  * *   * *  *   *

consensus_4421#0      CATCATTATTTATGTACATAAAATGTAACTTTTATCCAATGTATGCC----AATTCATTT 96
consensus_4421#2      TTGTACAAGATTTGGCC---AAATGTGGCTGTG----AATGTGGGGA----AAAGTAATT 94
consensus_4421#1      TATGAACAAAGTCACAC--TGAATGTAACTTGCA---AATATGAGGATCCAACGCTATTT 115
                          *  *        *    *****  **       *** *  *      *    * **

consensus_4421#0      CAAATGATAAAT-TAATTTAGTTTCAATAAG-TTGTTAGGCTAGCAACATATTTAATCAC 154
consensus_4421#2      AATAGACTGAGGATAACTCAAGAACGGCAAA-TCAT-ATAATAACAGTCTATG-GGTCAA 151
consensus_4421#1      CGTGGGAGAGGACAAATTCGATAAATTTAAAATCCGGATATCAGCTCCGGATCTCTCAAA 175
                                    ** *          **  *    *    * *     **      * 

consensus_4421#0      TAGAAGAAAATACAAAGAAAGAAACAGTAATAATGAATTTGATTCAGAGTAATATAGAAA 214
consensus_4421#2      -AATAAAGCTTATAGTATAAGAAACATGAATA-TGAA--TAGTTCA--GTTATTTAACAA 205
consensus_4421#1      AAATGGAAGGTGTTGGATCCCGTGTAGAATTA-TGAA--TGGT------AACTTTGAGAA 226
                       *    *   *              *  * ** ****  *  *         * *   **

consensus_4421#0      ATATATAGAAGAAAATT-GATGATTAAAAATACTGTTATATCTTGTGGCCGCCTGAATGC 273
consensus_4421#2      TTATACAATAGGAAAT---ATGCATATCA-TATTGGTCCATAA-ATAGTCCTCAAAAATT 260
consensus_4421#1      CTATTTATGGACCAATATGATACATATATTTCCTATTGCATAATT--------------- 271
                       ***  *      ***   **   **    *  *  *  **                   

consensus_4421#0      TCTGTTAATGTATAACGTGATAATACCGTCAATTACACACCAGTGTGATTTATCGATTGA 333
consensus_4421#2      ACCGTT------------------------------------------------------ 266
consensus_4421#1      ------------------------------------------------------------
                                                                                  

consensus_4421#0      ACCAATGACACACAAAACCCGTATGAGTAGTCTAGAGTACTTATCGGTCCTGCTTTTCAC 393
consensus_4421#2      ------------------------------------------------------------
consensus_4421#1      ------------------------------------------------------------
                                                                                  

consensus_4421#0      CTAGTTAAGTCCAGAACACCAATAAAAGCCTCTGCAATATGAATCATTATTCTCAAACAT 453
consensus_4421#2      ------------------------------------------------------------
consensus_4421#1      ------------------------------------------------------------
                                                                                  

consensus_4421#0      AATGGGTTTATATACAAACCAAATTAACTGACCACATCGTACCATAAAATAGAAAATAAC 513
consensus_4421#2      ------------------------------------------------------------
consensus_4421#1      ------------------------------------------------------------
                                                                                  

consensus_4421#0      ATTTGTACAAGATTTAGCCAAATGTGTCTGTGAATAGAG 552
consensus_4421#2      ---------------------------------------
consensus_4421#1      ---------------------------------------