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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 669 fasta sequence
[TTTTGGAAAATGAATGCAGAGATTTATTATCATTTCCAGTTTAAGTGGAACTTGATAAACATTCTGTGTTCCAAAATAAATGAATTGTGTTCTACATTGGTGACAAAGCGATTGCTGCACACATTATATTCATCTACACATCCTTTCATCGCATAGTCATTGACGTTGCAAACTGAGAAATTGTTATCTAAAGCTATTCGTTTCTCATCTACAACAACGGGACAGTGAAGTCAGAATCATATAATCGATAGAAATCTTTATATATATACCACCAATTTATTTCTGAAGTTCAATATGTAGACAAACACTCCTAAGATCATGTCATGCGTACTGAGTGTCCATTGTTTCAAATTGAATTATTTAGGATATTGCGCGAATGTTATTACCTCCCTGACTATCAGATCTCTGATGGTAAAGTACACGATTTATTGCTTCGATAATAGTAATACAACTTCAGAATCTAGGCAATTGACATTTGTTAGAAGGGATTCATGTCCGTCTCATTTCAATGACGTTCACTTCAATGTATTTATTATCAATTCTTCTGAACAAAGCATTTCAAATAACACAGTTATTATCCACTGAAATCTGTACACAGTGTTACATCAAACAATAACTTGCTCATCGTTTAAATCCTAAATCCTGAGTATCATTATTCTTCTTACTGTA]
[+] EMBL CD115165 [TTTTGGAAAATGAATGCAGAGATTTATTATCATTTCCAGTTTAAGTGGAACTTGATAAACATTCTGTGTTCCAAAATAAATGAATTGTGTTCTACATTGGTGACAAAGCGATTGCTGCACACATTATATTCATCTACACATCCTTTCATCGCATAGTCATTGACGTTGCAAACTGAGAAATTGTTATCTAAAGCTATTCGTTTCTCATCTACAACAACGGGACAGTGAAGTCAGAATCATATAATCGATAGAAATCTTTATATATATACCACCAATTTATTTCTGAAGTTCAATATGTAGACAAACACTCCTAAGATCATGTCATGCGTACTGAGTGTCCATTGTTTCAAATTGAATTATTTAGGATATTGCGCGAATGTTATTACCTCCCTGACTATCAGATCTCTGATGGTAAAGTACACGATTTATTGCTT ]
[+] EMBL CD116896 [ AAATGAATTGTGTTCTACATTGGTGACAAAGCGATTGCTGCACACATTATATTCATCTACACATCCTTTCATCGCATAGTCATTGACGTTGCAAACTGAGAAATTGTTATCTAAAGCTATTCGTTTCTCATCTACAACAACGGGACAGTGAAGTCAGAATCATATAATCGATAGAAATCTTTATATATATACCACCAATTTATTTCTGAAGTTCAATATGTAGACAAACACTCCTAAGATCATGTCATGCGAACTGAGTGTCCATTGTTTCAAATTGAATTATTTAGGATATTGCGCGAATGTTATTACATCCCTGACTATCAGATCTCTGATGGTAAAGTAGACGATTTATTGTTTCGATAATAGTAATACAACTTCAGAATCTAGGCAATTGACATTTGTTAGAAGGGATTCATGTCCGTCTCATTTCAATGACGTTCACTTCAATGTATTTATTATCAATTCTTCTGAACAAAGCATTTCAAATAACACAGTTATTATCCACTGAAATCTGTACACAGTGTTACATCAAACAATAACTTGCTCATCGTTTAAATCCTAAATCCTGAGTATCATTATTCTTCTTACTGTA]
consensusID : consensus_4422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence
[GCGCCAATGTTATTACATCCCTGACTATCAGATCCCTGAAGGTAAAGTAAACGACATATTGTTTTGATAATTGTAATACAACTTCAGAATCTAGGCATTTGACATTTGTTAGAAAGGTATTAATGTCCGTCTCATTTCAATGACGTTCACTTCAATGTATTGATTACCAATCCATCTGAAGAAGGCATTTCAGATAACACAGTTAATATCCACTGAAATCTGTTCAAAGTGTTACATCAAACAATAACTTGCTCGTCGTTTAAATTCCTAATCCTGAGTATCAATATTCTTCTTACTGTAGAGGTTACAGCCACAATGACGAGTTTAATACACCCAAATGGGAAGGTGTCGTTCTATTATGATAACATTCCTACGGAAATTGAGGAAAGTAGGTTGCAATCGGAAATCTATGGATTAATACCTTGTGAAGATGCTTTATTCAATATTATATTTTTGGTAC]
[-] EMBL CD117337 [GCGCCAATGTTATTACATCCCTGACTATCAGATCCCTGAAGGTAAAGTAAACGACATATTGTTTTGATAATTGTAATACAACTTCAGAATCTAGGCATTTGACATTTGTTAGAAAGGTATTAATGTCCGTCTCATTTCAATGACGTTCACTTCAATGTATTGATTACCAATCCATCTGAAGAAGGCATTTCAGATAACACAGTTAATATCCACTGAAATCTGTTCAAAGTGTTACATCAAACAATAACTTGCTCGTCGTTTAAATTCCTAATCCTGAGTATCAATATTCTTCTTACTGTAGAGGTTACAGCCACAATGACGAGTTTAATACACCCAAATGGGAAGGTGTCGTTCTATTATGATAACATTCCTACGGAAATTGAGGAAAGTAGGTTGCAATCGGAAATCTATGGATTAATACCTTGTGAAGATGCTTTATTCAATATTATATTTTTGGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4422#0 TTTTGGAAAATGAATGCAGAGATTTATTATCATTTCCAGTTTAAGTGGAACTTGATAAAC 60
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 ATTCTGTGTTCCAAAATAAATGAATTGTGTTCTACATTGGTGACAAAGCGATTGCTGCAC 120
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 ACATTATATTCATCTACACATCCTTTCATCGCATAGTCATTGACGTTGCAAACTGAGAAA 180
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 TTGTTATCTAAAGCTATTCGTTTCTCATCTACAACAACGGGACAGTGAAGTCAGAATCAT 240
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 ATAATCGATAGAAATCTTTATATATATACCACCAATTTATTTCTGAAGTTCAATATGTAG 300
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 ACAAACACTCCTAAGATCATGTCATGCGTACTGAGTGTCCATTGTTTCAAATTGAATTAT 360
consensus_4422#1 ------------------------------------------------------------
consensus_4422#0 TTAGGATATTGCGCGAATGTTATTACCTCCCTGACTATCAGATCTCTGATGGTAAAGTAC 420
consensus_4422#1 ----------GCGCCAATGTTATTACATCCCTGACTATCAGATCCCTGAAGGTAAAGTAA 50
**** *********** ***************** **** *********
consensus_4422#0 ACGATTTATTGCTTCGATAATAGTAATACAACTTCAGAATCTAGGCAATTGACATTTGTT 480
consensus_4422#1 ACGACATATTGTTTTGATAATTGTAATACAACTTCAGAATCTAGGCATTTGACATTTGTT 110
**** ***** ** ****** ************************* ************
consensus_4422#0 AGAAGGG-ATTCATGTCCGTCTCATTTCAATGACGTTCACTTCAATGTATTTATTATCAA 539
consensus_4422#1 AGAAAGGTATTAATGTCCGTCTCATTTCAATGACGTTCACTTCAATGTATTGATTACCAA 170
**** ** *** *************************************** **** ***
consensus_4422#0 TTCTTCTGAACAAAGCATTTCAAATAACACAGTTATTATCCACTGAAATCTGTACACAGT 599
consensus_4422#1 TCCATCTGAAGAAGGCATTTCAGATAACACAGTTAATATCCACTGAAATCTGTTCAAAGT 230
* * ****** ** ******** ************ ***************** ** ***
consensus_4422#0 GTTACATCAAACAATAACTTGCTCATCGTTTAAATCCTAAATCCTGAGTATCATTATTCT 659
consensus_4422#1 GTTACATCAAACAATAACTTGCTCGTCGTTTAAATTCCTAATCCTGAGTATCAATATTCT 290
************************ ********** * ************** ******
consensus_4422#0 TCTTACTGTA-------------------------------------------------- 669
consensus_4422#1 TCTTACTGTAGAGGTTACAGCCACAATGACGAGTTTAATACACCCAAATGGGAAGGTGTC 350
**********
consensus_4422#0 ------------------------------------------------------------
consensus_4422#1 GTTCTATTATGATAACATTCCTACGGAAATTGAGGAAAGTAGGTTGCAATCGGAAATCTA 410
consensus_4422#0 --------------------------------------------------
consensus_4422#1 TGGATTAATACCTTGTGAAGATGCTTTATTCAATATTATATTTTTGGTAC 460
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||