cluster # 4423

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Schistosoma mansoni
cluster # 4423 cluster # 4423 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4423#0 length = 644 sequences # 2

consensus_4423#1 length = 432 sequences # 1

consensusID : consensus_4423#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 644
fasta sequence

                              [TGATGTCCTGTGCTGTCGCGCACGTGAACCATTTCAACAGAACTTTTCCCGTGGCGATGTCCACCTGGATTGTATCATTTGGCTTGATATTTGGATCTGGATATCGAATGGTCCTGGCGTCATGGGTCACAATGTATGGTACTCCTCCGTGGCCGACTAGGACTTTCTTTACTTTACAGAGTTTATACTTAGCCTCATCAGGATGGATGCGCTGAATAGCAAACCTGCCTTTGGTGTCGTAAATAAGGCGAAAGTGCTCGTTTGTTTTCTCTATGGTGATA--ACATCTGAAAGAAGACCAGCTAGAATATCTTGAAGAAAGGAAGATACGAGATATAGTGAAGAAGCATTCCAGTTTTATCAACTATCCTATCAAGCTGGTTGTAAATAAGGAGCGAACAAAGGAGGTGTCTGATGACGAATCTGAAAAAGTAGAGTCGAAAGAGACTGAAGAATCTGATGACAAGCCGAAAGTCGAAGATCTAGATGAAGACGAGGAAGACGAGAATAAGGAAAAGAAGAAAAAGAAGAAGGTAACGGAGAAGTATACTGAGGAAGAACAGTTGAACAAGCACAAGCCGCTCTGGACGCGCAATCCCGAAGATATAACTACAGAAGAGTATGCAGAGTTTTACAAGTCGTTAAC]

[-] EMBL CD095351             [TGATGTCCTGTGCTGTCGCGCACGTGAACCATTTCAACAGAACTTTTCCCGTGGCGATGTCCACCTGGATTGTATCATTTGGCTTGATATTTGGATCTGGATATCGAATGGTCCTGGCGTCATGGGTCACAATGTATGGTACTCCTCCGTGGCCGACTAGGACTTTCTTTACTTTACAGAGTTTATACTTAGCCTCATCAGGATGGATGCGCTGAATAGCAAACCTGCCTTTGGTGTCGTAAATAAGGCGAAAGTGCTCGTTTGTTTTCTCTATGGTGATA  ACATC                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD112860             [                                                                                                                                                                                                             GATGCGCTGAATAGCAAACCTGCCTTTGGTGTCGTAAATAAGGCGAAAGTGCTCGTTTGTTTTCACTAAGGTGATATTACATCTGAAAGAAGACCAGCTAGAATATCTTGAAGAAAGGAAGATACGAGATATAGTGAAGAAGCATTCCAGTTTTATCAACTATCCTATCAAGCTGGTTGTAAATAAGGAGCGAACAAAGGAGGTGTCTGATGACGAATCTGAAAAAGTAGAGTCGAAAGAGACTGAAGAATCTGATGACAAGCCGAAAGTCGAAGATCTAGATGAAGACGAGGAAGACGAGAATAAGGAAAAGAAGAAAAAGAAGAAGGTAACGGAGAAGTATACTGAGGAAGAACAGTTGAACAAGCACAAGCCGCTCTGGACGCGCAATCCCGAAGATATAACTACAGAAGAGTATGCAGAGTTTTACAAGTCGTTAAC]




>consensus_4423#0
TGATGTCCTGTGCTGTCGCGCACGTGAACCATTTCAACAGAACTTTTCCCGTGGCGATGT
CCACCTGGATTGTATCATTTGGCTTGATATTTGGATCTGGATATCGAATGGTCCTGGCGT
CATGGGTCACAATGTATGGTACTCCTCCGTGGCCGACTAGGACTTTCTTTACTTTACAGA
GTTTATACTTAGCCTCATCAGGATGGATGCGCTGAATAGCAAACCTGCCTTTGGTGTCGT
AAATAAGGCGAAAGTGCTCGTTTGTTTTCTCTATGGTGATAACATCTGAAAGAAGACCAG
CTAGAATATCTTGAAGAAAGGAAGATACGAGATATAGTGAAGAAGCATTCCAGTTTTATC
AACTATCCTATCAAGCTGGTTGTAAATAAGGAGCGAACAAAGGAGGTGTCTGATGACGAA
TCTGAAAAAGTAGAGTCGAAAGAGACTGAAGAATCTGATGACAAGCCGAAAGTCGAAGAT
CTAGATGAAGACGAGGAAGACGAGAATAAGGAAAAGAAGAAAAAGAAGAAGGTAACGGAG
AAGTATACTGAGGAAGAACAGTTGAACAAGCACAAGCCGCTCTGGACGCGCAATCCCGAA
GATATAACTACAGAAGAGTATGCAGAGTTTTACAAGTCGTTAAC

consensusID : consensus_4423#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [GAGAGAAAATGATGTCGATGAAGTTTATCTTCAGTTTGTCTTCAATTAACTCATAAGACTGTTATCAGTTATTGCTTCTATTGTTTTCTATTAGTTTATTGCTTTTCGGTGAAAAAAATATTGTTTCTAATGATTTTTATCACTAAACAGTATTAAAATGTAAAGCCATATCGGCTGTGAAACATGGTCGATAAGAGTAAAGGATATTCATAGGCTGCTAGTATTCGATCATAGGTGTCATCGAAGCATTGCTTGTATATCCTGGGACCACCGGGTAAGTAATACAGTTGTTAGGAAACCGGTACTAAGTAAGGATGGTAAATCGATTGATGAAGTAGTGAAACTTCATCAGTTGAGATGGCTGGGACACGTGCTACGTATGTCCATCCACCAACTACCCCGACGTGTAATGTTTTATGGTGTAGGGGTAGG]

[+] EMBL CD115795             [GAGAGAAAATGATGTCGATGAAGTTTATCTTCAGTTTGTCTTCAATTAACTCATAAGACTGTTATCAGTTATTGCTTCTATTGTTTTCTATTAGTTTATTGCTTTTCGGTGAAAAAAATATTGTTTCTAATGATTTTTATCACTAAACAGTATTAAAATGTAAAGCCATATCGGCTGTGAAACATGGTCGATAAGAGTAAAGGATATTCATAGGCTGCTAGTATTCGATCATAGGTGTCATCGAAGCATTGCTTGTATATCCTGGGACCACCGGGTAAGTAATACAGTTGTTAGGAAACCGGTACTAAGTAAGGATGGTAAATCGATTGATGAAGTAGTGAAACTTCATCAGTTGAGATGGCTGGGACACGTGCTACGTATGTCCATCCACCAACTACCCCGACGTGTAATGTTTTATGGTGTAGGGGTAGG]




>consensus_4423#1
GAGAGAAAATGATGTCGATGAAGTTTATCTTCAGTTTGTCTTCAATTAACTCATAAGACT
GTTATCAGTTATTGCTTCTATTGTTTTCTATTAGTTTATTGCTTTTCGGTGAAAAAAATA
TTGTTTCTAATGATTTTTATCACTAAACAGTATTAAAATGTAAAGCCATATCGGCTGTGA
AACATGGTCGATAAGAGTAAAGGATATTCATAGGCTGCTAGTATTCGATCATAGGTGTCA
TCGAAGCATTGCTTGTATATCCTGGGACCACCGGGTAAGTAATACAGTTGTTAGGAAACC
GGTACTAAGTAAGGATGGTAAATCGATTGATGAAGTAGTGAAACTTCATCAGTTGAGATG
GCTGGGACACGTGCTACGTATGTCCATCCACCAACTACCCCGACGTGTAATGTTTTATGG
TGTAGGGGTAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4423#0      TGATGTCCTGTGCTGTCGCGCACGTGAACCATTTCAACAGAACTTTTCCCGTGGCGATGT 60
consensus_4423#1      -----------------------------------GAGAGAAAATGATGT-CGATGAAGT 24
                                                          * ****  *       *  ** **

consensus_4423#0      CCACCTGGATTGTATCATTTGGCTTGATATTTGGATCTGGATATCGAATGGTCCTGGCGT 120
consensus_4423#1      TTATCTTCAGTTTGTC--TTCAATTAACTCATAAGACTGT-TATCAGTTATTGCTTCTAT 81
                        * **  * * * **  **   ** *    *    ***  ****   *  * **    *

consensus_4423#0      CATGGGTCACAATGTATGGTACTCCTCCGTGGCCGACTAGGACTTTCTTTACTTTACAGA 180
consensus_4423#1      TGTTTTCTATTA-GTTTATTGCTTTTCGGTG----AAAAAAATATTGTTT--CTAATGAT 134
                        *     *  * ** *  * **  ** ***    *  *  *  ** ***   * *    

consensus_4423#0      GTTTAT-ACTTAGCCTCATCAGGATGGATGCGCTGAATAGCAAACCTGCCTTTGGTGTCG 239
consensus_4423#1      TTTTATCACTAAACAGTATTAAAATGTA-AAGCCATATCGGCTGTGAAACATGGTCGATA 193
                       ***** *** * *   ** *  *** *   **   ** *         * * *  *   

consensus_4423#0      TAAATAAGGCGAAAGTGCTCGTTTGTTTTCTCTATGGTGATAACATCTGAAAGAAGACCA 299
consensus_4423#1      AGAGTAAAG-GATATTCATAGGCTGCTAG-TATTCGATCATAG-GTGTCATCGAAGCATT 250
                        * *** * ** * *  * *  ** *   * *  * * ***   * * *  ****    

consensus_4423#0      GCTAGAATATCTTGAAGAAAGGAAGATACGAGATATAGTGAAGAAGCATTCCAGTTTTAT 359
consensus_4423#1      GCTTGTATATCCTGG-GACCACCGGGTAAGTAATACAGTTGTTAGGAAA-CCGGTACTA- 307
                      *** * ***** **  **      * ** *  *** ***    * * *  ** **  ** 

consensus_4423#0      CAACTATCCTATCAAGCTGGTTGTAAATAAGGAGCGAACAAAGGAGGTGTCTGATGACGA 419
consensus_4423#1      -AGTAAGGATGGTAAATCGATTG--ATGAAGTAGTGAA-----ACTTCATCAGTTGAGAT 359
                       *   *   *   **   * ***  *  *** ** ***           ** * ***   

consensus_4423#0      ATCTGAAAAAGTAGAGTCGAAAGAGACTGAAGAATCTGATGACAAGCCGAAAGTCGAAGA 479
consensus_4423#1      GGCTGGGACAC--GTGCTACGTATGTCC-----ATCCACCAACTACCCCGACGTGTAATG 412
                        ***  * *   * *        * *      ***     ** * **  * **  **  

consensus_4423#0      TCTAGATGAAGACGAGGAAGACGAGAATAAGGAAAAGAAGAAAAAGAAGAAGGTAACGGA 539
consensus_4423#1      TTTT-ATGGTGTAGGGGTAGG--------------------------------------- 432
                      * *  ***  *  * ** **                                        

consensus_4423#0      GAAGTATACTGAGGAAGAACAGTTGAACAAGCACAAGCCGCTCTGGACGCGCAATCCCGA 599
consensus_4423#1      ------------------------------------------------------------
                                                                                  

consensus_4423#0      AGATATAACTACAGAAGAGTATGCAGAGTTTTACAAGTCGTTAAC 644
consensus_4423#1      ---------------------------------------------