These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 783 fasta sequence [AACTAGAAAACATATCATCGAAGGATTTGTACCGGTGAGCTGGACATCAGCAAGCTTTAAAGTTACGTATTTAACAATGTTAATACAAATTAAGTGAAAGACAAGTACTTAGCACTTGGATTTATATGAGTAGATCAATCAGATGATTTGTTCTCAAAAGACTTTTTAAATAGTATACACATAATATATTGTTGATAATGTCTTATTCACTTACTCATAGCTAATGTCTAGTTACAACATTTAATTTTGAATACCCCATCACTTGTGGTATTTTTATTTGTCATTAAAAAAAATTATTTGGTTAGCATTTAGTAAACATGACAAACGTGTATCATATCTGATAACTATTGAATACACAAACTCAGGTAGACTAAATGAAGTTGATAAAATGAAACATACAATAATAGAAAATACAAAAACAAAACCTCATTTTATAGAAATAACAGTGAGTAGTTAGTTTATTTCAGTTTTATTGGATCTTGTTACAATTCATTAAGTCATATGCATGATTGGCATAAACACTAATTTAAAAAAAAAGGAGATCAAGAATTAAATGCGATTACGTGACAGTAGACTTCGTGGAACAATGTACAATGGTCAAAGTACATTAACATCGATCAATGATACTAAAAAAATCTATTANAATAAGAGGATTGAACCATGTGTCACAATAGGCTCAATGGCCAACTACTCTAATATTTAAGGGTTGCTATGATAACAATAAGCTGGGACTAGTCTGAGCCATGTTGGCAGATGCAGACTACCTGGTTGGGGTCCGCGTGA] [+] EMBL CD122707 [AACTAGAAAACATATCATCGAAGGATTTGTACCGGTGAGCTGGACATCAGCAAGCTTTAAAGTTACGTATTTAACAATGTTAATACAAATTAAGTGAAAGACAAGTACTTAGCACTTGGATTTATATGAGTAGATCAATCAGATGATTTGTTCTCAAAAGACTTTTTAAATAGTATACACATAATATATTGTTGATAATGTCTTATTCACTTACTCATAGCTAATGTCTAGTTACAACATTTAATTTTGAATACCCCATCACTTGTGGTATTTTTATTTGTCATTAAAAAAAATTATTTGGTTAGCATTTAGTAAACATGACAAACGTGTATCATATCTGATAACTATTGAATACACAAACTCAGGTAGACTAAATGAAGTTGATAAAATGAAACATACAATAATAGAAAATACAAAAACAAAACCTCATTTTATAGAAATAACAGTGAGTAGTTAGTTTATTTCAGTTTTATTGGATCTTGTTACAATTCATTAAGTCATATGCATGATTGGCATAAACACTAATTTAAAAAAAAAGGAGATCAAGAATTAAATGCGATTACGTGACAGTAGACTTCGTGGAACAATGTACAATGGTCAAAGTACATTAACATCGATCAATGATACTAAAAAAATCTATTANAATA ] [-] EMBL CD122855 [ ctCTCATGTAGAAAAAAAGGAGATCAAGAATTAAATGCGATTACGTGACAGTAGGCTTCGTGGAACAATGTACAATGGTCAAAGTACATTAACATCGACCAATGATACTAAAAAAATCTATTA AATAAGAGGATTGAACCATGTGTCACAATAGGCTCAATGGCCAACTACTCTAATATTTAAGGGTTGCTATGATAACAATAAGCTGGGACTAGTCTGAGCCATGTTGGCAGATGCAGACTACCTGGTTGGGGTCCGCGTGA] consensusID : consensus_4424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [CTTCTAACAACCAAAGCAGCACTCTTTATAGGTACATGGAACGTCCGGACAATGTGGGAGACAGGAAAAACCAGCCAAATAGCAATGGGAAATCGAGGGGAGATNNACAACTTGTGCATGTACTTTCGGNAANATCAGCGAAAATACCCATTGGNNACACANNAACCGGNNACAACANNAAGGCTAGGGCTACCAGAGAGTAGTTGGTGTTCTTCTCTCCTCCCGGCTCACCGAAGGGGAAAATGCTCCCACACTCAGGGAGTGGGGTGGTTTGCTTCTTAATTCTGGCCACAAAAAA] [+] EMBL CD088479 [CTTCTAACAACCAAAGCAGCACTCTTTATAGGTACATGGAACGTCCGGACAATGTGGGAGACAGGAAAAACCAGCCAAATAGCAATGGGAAATCGAGGGGAGATNNACAACTTGTGCATGTACTTTCGGNAANATCAGCGAAAATACCCATTGGNNACACANNAACCGGNNACAACANNAAGGCTAGGGCTACCAGAGAGTAGTTGGTGTTCTTCTCTCCTCCCGGCTCACCGAAGGGGAAAATGCTCCCACACTCAGGGAGTGGGGTGGTTTGCTTCTTAATTCTGGCCACAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4424#0 AACTAGAAAACATATCATCGAAGGATTTGTACCGGTGAGCTGGACATCAGCAAGCTTTAA 60 consensus_4424#1 ------------------------------------------------------------ consensus_4424#0 AGTTACGTATTTAACAATGTTAATACAAATTAAGTGAAAGACAAGTACTTAGCACTTGGA 120 consensus_4424#1 ------------------------------------------------------------ consensus_4424#0 TTTATATGAGTAGATCAATCAGATGATTTGTTCTCAAAAGACTTTTTAAATAGTATACAC 180 consensus_4424#1 ------------------------------------------------------------ consensus_4424#0 ATAATATATTGTTGATAATGTCTTATTCACTTACTCATAGCTAATGTCTAGTTACAACAT 240 consensus_4424#1 ------------------------------------------------------------ consensus_4424#0 TTAATTTTGAATACCCCATCACTTGTGGTATTTTTATTTGTCATTAAAAAAAATTATTTG 300 consensus_4424#1 ------------------------------------------------------------ consensus_4424#0 GTTAGCATTTAGTAAACATGACAAACGTGTATCATATCTGATAACTATTGAATACACAAA 360 consensus_4424#1 ------------------------------------------------------------ consensus_4424#0 CTCAGGTAGACTAAATGAAGTTGATAAAATGAAACATACAATAATAGAAAATACAAAAAC 420 consensus_4424#1 ------------------------------------------------------------ consensus_4424#0 AAAACCTCATTTTATAGAAATAACAGTGAGTAGTTAGTTTATTTCAGTTTTATTGGATCT 480 consensus_4424#1 ----------CTTCTAACAACCAAAGC-AGCACTC--TTTAT---AGGTACATGGAACGT 44 ** ** ** * ** ** * * ***** ** * ** * * * consensus_4424#0 TGTTACAATTCATTAAGTCATATGCATGATTGGCATAAACACTAATTTAAAAA-AAAAGG 539 consensus_4424#1 CCGGACAAT---GTGGGAGACAGGAAAAACCAGC-CAAATAGCAATGGGAAATCGAGGGG 100 ***** * * * * * * * ** *** * *** *** * ** consensus_4424#0 AGATCAAGAATTAAATGCGATTACGTGACAGTAGACTTCGTGGAACAATGTACAATGGTC 599 consensus_4424#1 AGATNNACAACTTG-TGCATGTACTTT-CGGNAANATCAGCGAA--AATACCCATTGGNN 156 **** * ** * *** *** * * * * * * * * *** ** *** consensus_4424#0 AAAGTACATTAACATCGATCAATGATACTAAAAAAATCTATTANAATAAGAGGATTGAAC 659 consensus_4424#1 ACACANNAACCGGNNACAACANNAAGGCTAGGGCTACCAG--AGAGTAGTTGGTGTTCTT 214 * * * * ** * *** * * * * ** ** * consensus_4424#0 CATGTGTCACAATAGGCTCAATGGCCAACTACTCTAATATTTAAGGGTTGCTATGATAAC 719 consensus_4424#1 CTCTCCTCCCGGCTCACCGAAGGGGAAAATGCTCCCACACTCAGGGAGTGGGGTGGT--T 272 * ** * * ** ** ** * *** * * * * ** ** ** * consensus_4424#0 AATAAGCTGGGACTAGTCTGAGCCATGTTGGCAGATGCAGACTACCTGGTTGGGGTCCGC 779 consensus_4424#1 TGCTTCTTAATTCTGGCCACAAAAAA---------------------------------- 298 * ** * * * * consensus_4424#0 GTGA 783 consensus_4424#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||