These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [CTTGTCCTTATAAATTCTAGAGATCGTCCTGGAGGTTCAATGCACTATGGATACGACGGCCAAGAAACATCCCAATATGCCGTTCCGGCTGAAAAGGCAGGACTTGTAATTGGCAAAGGTGGCGAGTCCATTAAAGAGATTTGTCGCGTCAGTGGAGCCCATGTCGAAATATCAAAGGAGCCACCACCGGACCCCTCTATCAAAATATTTAATGTCCGTGGTAACAGACAAGAGGTGGAGGCGGAGGTTATCGCGGCGGACGAGGCGGCGGTGGTGGAAGAGATCGTGACAATAACGATGGTCGTCGAGACGGCTGTTTCAACTGCGGTGGGCTTGATCATTATGCTCGAGATTGTACCAGTGGTCGTGGACACTATGGTGGTGGTGGTGGAGGAGGAGGAGGAGGTGG] [+] EMBL CD098203 [CTTGTCCTTATAAATTCTAGAGATCGTCCTGGAGGTTCAATGCACTATGGATACGACGGCCAAGAAACATCCCAATATGCCGTTCCGGCTGAAAAGGCAGGACTTGTAATTGGCAAAGGTGGCGAGTCCATTAAAGAGATTTGTCGCGTCAGTGGAGCCCATGTCGAAATATCAAAGGAGCCACCACCGGACCCCTCTATCAAAATATTTAATGTCCGTGGTAACAGACAAGAGGTGGAGGCGGAGGTTATCGCGGCGGACGAGGCGGCGGTGGTGGAAGAGATCGTGACAATAACGATGGTCGTCGAGACGGCTGTTTCAACTGCGGTGGGCTTGATCATTATGCTCGAGATTGTACCAGTGGTCGTGGACACTATGGTGGTGGTGGTGGAGGAGGAGGAGGAGGTGG] consensusID : consensus_4435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 364 fasta sequence [TACTATTAACACATTACTAATAGCAATGTTTTTAATAAACACTTTGGTGGCAACTCCTAAAACAAGGAACAACTCAATAATCTAACCTACTTATTCCACCATCATTATATATCTAATTTTACTAAATGACCTCTCTTAACCAACAAGATTTTATTAATCAATCTTCTAAGCTATGTAAATAACTTTACTAACCTAAGACAATCTTAATCTCAGACCCTATCACATAATAATTACAATATCTCTGTCCTAAATAACCAACACCACTCAGCTATTCCCTAAGTTCGATAAATAAAGTCCTAACCAGATATCAGTTCACACGATCTCGTGCGAATTTCGGCAGAGGGGGGGGGCCGGGTACCTATTC] [-] EMBL BE431286 [TACTATTAACACATTACTAATAGCAATGTTTTTAATAAACACTTTGGTGGCAACTCCTAAAACAAGGAACAACTCAATAATCTAACCTACTTATTCCACCATCATTATATATCTAATTTTACTAAATGACCTCTCTTAACCAACAAGATTTTATTAATCAATCTTCTAAGCTATGTAAATAACTTTACTAACCTAAGACAATCTTAATCTCAGACCCTATCACATAATAATTACAATATCTCTGTCCTAAATAACCAACAC ] [+] EMBL AW186603 [ TAAGCTATGTAAATAACTTTACTAACCTAAGACAATCTTAATCTCAGACCCTATCACATAATAATTACAATATCTCTGTCCTAAATAACCAACCACACTCAGCTATTCCCTAAGTTCGATAAATAAAGTCCTAACCAGATATCAGTTCACACGATCTCGTGCGAATTTCGGCAGAGGGGGGGGGCCGGGTACCTATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4435#0 CTTGTCCTTATAAATTCTAGAGATCGTCCTGGAGGTTCAATGCACTATGGATA-CGACGG 59 consensus_4435#1 -------------------------------TACTATTAACACATTACTAATAGCAATGT 29 * * ** ** ** *** * * * consensus_4435#0 CC--AAGAAACATCCCAATATGCCGTTCCGGCTGAAAAGGCAGGACTTGTAATTGGCAAA 117 consensus_4435#1 TTTTAATAAACACTTTGGTG-GCAACTCCTAA-AACAAGGAACAACTC--AATAATCTAA 85 ** ***** * ** *** * **** * *** *** * ** consensus_4435#0 GGTGGCGAGTCCATTAAAGAGATTTGTC--GCGTCAGTGGAGCCCATGTCGAAATATCAA 175 consensus_4435#1 CCTACTTATTCCACCATCATTATATATCTAATTTTACTAAATGACCTCTCTTAACCAACA 145 * * **** * ** * ** * * * * * * ** ** * consensus_4435#0 AGGAGCCACCACCGGACCCCTCTATCAAAATATTTAATGTCCGTGGTAACAGACAAGAGG 235 consensus_4435#1 AGATTTTATTAATCAATCTTCTAAGCTATGTAAATAACTTTACTAACCTAAGACAATCT- 204 ** * * * * * * * ** *** * * ****** consensus_4435#0 TGGAGGCGGAGGTTATCGCGGCGGACGAGGCGGCGGTGGTGGAAGAGATCGTGACAATAA 295 consensus_4435#1 TAATCTCAGACCCTATCACA-------------TAATAATTACAATATCTCTGTCCTAAA 251 * * ** **** * * * * ** * ** consensus_4435#0 CGATGGTCGTCGAGACGGCTGTTTCAACTGCGGTGGGCTTGATCATTATGCTCGAGATTG 355 consensus_4435#1 TAACCAACACC-ACTCAGCTATTCCC-------TAAGTTCGATAAATAAAGTCCTAACCA 303 * * * * * *** ** * * * * *** * ** ** * consensus_4435#0 --TACCAGTGGTCGTGGACACTATGGTGGTGGTGGTGGAGGAGGAGGAGGAGGTGG---- 409 consensus_4435#1 GATATCAGTTCACACG-ATCTCGTGCGAATTTCGGCAGAGGGGGGGGGCCGGGTACCTAT 362 ** **** * * * ** * ** **** ** ** *** consensus_4435#0 -- consensus_4435#1 TC 364 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||