cluster # 4435

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Schistosoma mansoni
cluster # 4435 cluster # 4435 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4435#0 length = 409 sequences # 1

consensus_4435#1 length = 364 sequences # 2

consensusID : consensus_4435#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence

                              [CTTGTCCTTATAAATTCTAGAGATCGTCCTGGAGGTTCAATGCACTATGGATACGACGGCCAAGAAACATCCCAATATGCCGTTCCGGCTGAAAAGGCAGGACTTGTAATTGGCAAAGGTGGCGAGTCCATTAAAGAGATTTGTCGCGTCAGTGGAGCCCATGTCGAAATATCAAAGGAGCCACCACCGGACCCCTCTATCAAAATATTTAATGTCCGTGGTAACAGACAAGAGGTGGAGGCGGAGGTTATCGCGGCGGACGAGGCGGCGGTGGTGGAAGAGATCGTGACAATAACGATGGTCGTCGAGACGGCTGTTTCAACTGCGGTGGGCTTGATCATTATGCTCGAGATTGTACCAGTGGTCGTGGACACTATGGTGGTGGTGGTGGAGGAGGAGGAGGAGGTGG]

[+] EMBL CD098203             [CTTGTCCTTATAAATTCTAGAGATCGTCCTGGAGGTTCAATGCACTATGGATACGACGGCCAAGAAACATCCCAATATGCCGTTCCGGCTGAAAAGGCAGGACTTGTAATTGGCAAAGGTGGCGAGTCCATTAAAGAGATTTGTCGCGTCAGTGGAGCCCATGTCGAAATATCAAAGGAGCCACCACCGGACCCCTCTATCAAAATATTTAATGTCCGTGGTAACAGACAAGAGGTGGAGGCGGAGGTTATCGCGGCGGACGAGGCGGCGGTGGTGGAAGAGATCGTGACAATAACGATGGTCGTCGAGACGGCTGTTTCAACTGCGGTGGGCTTGATCATTATGCTCGAGATTGTACCAGTGGTCGTGGACACTATGGTGGTGGTGGTGGAGGAGGAGGAGGAGGTGG]




>consensus_4435#0
CTTGTCCTTATAAATTCTAGAGATCGTCCTGGAGGTTCAATGCACTATGGATACGACGGC
CAAGAAACATCCCAATATGCCGTTCCGGCTGAAAAGGCAGGACTTGTAATTGGCAAAGGT
GGCGAGTCCATTAAAGAGATTTGTCGCGTCAGTGGAGCCCATGTCGAAATATCAAAGGAG
CCACCACCGGACCCCTCTATCAAAATATTTAATGTCCGTGGTAACAGACAAGAGGTGGAG
GCGGAGGTTATCGCGGCGGACGAGGCGGCGGTGGTGGAAGAGATCGTGACAATAACGATG
GTCGTCGAGACGGCTGTTTCAACTGCGGTGGGCTTGATCATTATGCTCGAGATTGTACCA
GTGGTCGTGGACACTATGGTGGTGGTGGTGGAGGAGGAGGAGGAGGTGG

consensusID : consensus_4435#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 364
fasta sequence

                              [TACTATTAACACATTACTAATAGCAATGTTTTTAATAAACACTTTGGTGGCAACTCCTAAAACAAGGAACAACTCAATAATCTAACCTACTTATTCCACCATCATTATATATCTAATTTTACTAAATGACCTCTCTTAACCAACAAGATTTTATTAATCAATCTTCTAAGCTATGTAAATAACTTTACTAACCTAAGACAATCTTAATCTCAGACCCTATCACATAATAATTACAATATCTCTGTCCTAAATAACCAACACCACTCAGCTATTCCCTAAGTTCGATAAATAAAGTCCTAACCAGATATCAGTTCACACGATCTCGTGCGAATTTCGGCAGAGGGGGGGGGCCGGGTACCTATTC]

[-] EMBL BE431286             [TACTATTAACACATTACTAATAGCAATGTTTTTAATAAACACTTTGGTGGCAACTCCTAAAACAAGGAACAACTCAATAATCTAACCTACTTATTCCACCATCATTATATATCTAATTTTACTAAATGACCTCTCTTAACCAACAAGATTTTATTAATCAATCTTCTAAGCTATGTAAATAACTTTACTAACCTAAGACAATCTTAATCTCAGACCCTATCACATAATAATTACAATATCTCTGTCCTAAATAACCAACAC                                                                                                       ]
[+] EMBL AW186603             [                                                                                                                                                                      TAAGCTATGTAAATAACTTTACTAACCTAAGACAATCTTAATCTCAGACCCTATCACATAATAATTACAATATCTCTGTCCTAAATAACCAACCACACTCAGCTATTCCCTAAGTTCGATAAATAAAGTCCTAACCAGATATCAGTTCACACGATCTCGTGCGAATTTCGGCAGAGGGGGGGGGCCGGGTACCTATTC]




>consensus_4435#1
TACTATTAACACATTACTAATAGCAATGTTTTTAATAAACACTTTGGTGGCAACTCCTAA
AACAAGGAACAACTCAATAATCTAACCTACTTATTCCACCATCATTATATATCTAATTTT
ACTAAATGACCTCTCTTAACCAACAAGATTTTATTAATCAATCTTCTAAGCTATGTAAAT
AACTTTACTAACCTAAGACAATCTTAATCTCAGACCCTATCACATAATAATTACAATATC
TCTGTCCTAAATAACCAACACCACTCAGCTATTCCCTAAGTTCGATAAATAAAGTCCTAA
CCAGATATCAGTTCACACGATCTCGTGCGAATTTCGGCAGAGGGGGGGGGCCGGGTACCT
ATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4435#0      CTTGTCCTTATAAATTCTAGAGATCGTCCTGGAGGTTCAATGCACTATGGATA-CGACGG 59
consensus_4435#1      -------------------------------TACTATTAACACATTACTAATAGCAATGT 29
                                                      *   * **  ** **   *** * * * 

consensus_4435#0      CC--AAGAAACATCCCAATATGCCGTTCCGGCTGAAAAGGCAGGACTTGTAATTGGCAAA 117
consensus_4435#1      TTTTAATAAACACTTTGGTG-GCAACTCCTAA-AACAAGGAACAACTC--AATAATCTAA 85
                          ** *****      *  **   ***     * **** *  ***   ***   * **

consensus_4435#0      GGTGGCGAGTCCATTAAAGAGATTTGTC--GCGTCAGTGGAGCCCATGTCGAAATATCAA 175
consensus_4435#1      CCTACTTATTCCACCATCATTATATATCTAATTTTACTAAATGACCTCTCTTAACCAACA 145
                        *    * ****  *     ** * **     * * *  *   * * **  **     *

consensus_4435#0      AGGAGCCACCACCGGACCCCTCTATCAAAATATTTAATGTCCGTGGTAACAGACAAGAGG 235
consensus_4435#1      AGATTTTATTAATCAATCTTCTAAGCTATGTAAATAACTTTACTAACCTAAGACAATCT- 204
                      **     *  *    * *     * * *  **  ***  *   *      ******    

consensus_4435#0      TGGAGGCGGAGGTTATCGCGGCGGACGAGGCGGCGGTGGTGGAAGAGATCGTGACAATAA 295
consensus_4435#1      TAATCTCAGACCCTATCACA-------------TAATAATTACAATATCTCTGTCCTAAA 251
                      *     * **   **** *                 *  *   *       ** *   **

consensus_4435#0      CGATGGTCGTCGAGACGGCTGTTTCAACTGCGGTGGGCTTGATCATTATGCTCGAGATTG 355
consensus_4435#1      TAACCAACACC-ACTCAGCTATTCCC-------TAAGTTCGATAAATAAAGTCCTAACCA 303
                        *    *  * *  * *** ** *        *  * * *** * **   **   *   

consensus_4435#0      --TACCAGTGGTCGTGGACACTATGGTGGTGGTGGTGGAGGAGGAGGAGGAGGTGG---- 409
consensus_4435#1      GATATCAGTTCACACG-ATCTCGTGCGAATTTCGGCAGAGGGGGGGGGCCGGGTACCTAT 362
                        ** ****   *  * *     **    *   **  **** ** **    ***      

consensus_4435#0      --
consensus_4435#1      TC 364