cluster # 4437

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Schistosoma mansoni
cluster # 4437 cluster # 4437 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4437#0 length = 736 sequences # 1

consensus_4437#1 length = 510 sequences # 1
consensus_4437#2 length = 274 sequences # 1

consensusID : consensus_4437#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 736
fasta sequence

                              [CCTTTTTTTTTTNAATAAAATTTTATATATATATAAACCGAACAATTATACAAAGGACCGGCAGAGAGGACATCGAGTGATGAAAGAGAAGTCCAAGTGAATATACTCATTTTACAAATAAGTATATAGAAATAGATCGAACTAAACATAACGAAAGAGAAAACAATCGAGCAACAACAACAAAAAAGAAAAGAGACAATAGTAAAGAAAATTTTATTTACACAGAAATTACACACAAATTAGTAATTAAAAAAAGACACTTGAAATTAATTAGATTATTATTATTTTTTTCTTTGGGAAAGAAAAAAAAAGAAGAACGAAACGAGAGAAAAAAAACTATGTAACCATAATTGAACAAGAAATGCACTTAGAAAATATAAACAATCCATATGTATATGTATATATATATATGTACTAATTGCAATAAAATAAATAAATAAATATACACTGTACACTTAGATTTGCCAAGTTTTTTTTAAAAAAAAAGAAAATTAAAGAAGCATAAATGACTTTTTTTTGTAAAAGGAAAATTATAAAACATTGTTGGGTTCCCCTATGTTACCATGGTTACATATATATGGATATACGTTGTTCATATTTATGATAAGTGGATAAAAAAAAAGAAGCAGAGAAATATAATTTAAAATGAAGTAAACAAATGAAAACAAGTGATTAGAAAAAAAAGAGGTTGCAGAATCTAGTTAATATTATGATAAACAAATTGAAAGAGAATGTA]

[+] EMBL CD075479             [CCTTTTTTTTTTNAATAAAATTTTATATATATATAAACCGAACAATTATACAAAGGACCGGCAGAGAGGACATCGAGTGATGAAAGAGAAGTCCAAGTGAATATACTCATTTTACAAATAAGTATATAGAAATAGATCGAACTAAACATAACGAAAGAGAAAACAATCGAGCAACAACAACAAAAAAGAAAAGAGACAATAGTAAAGAAAATTTTATTTACACAGAAATTACACACAAATTAGTAATTAAAAAAAGACACTTGAAATTAATTAGATTATTATTATTTTTTTCTTTGGGAAAGAAAAAAAAAGAAGAACGAAACGAGAGAAAAAAAACTATGTAACCATAATTGAACAAGAAATGCACTTAGAAAATATAAACAATCCATATGTATATGTATATATATATATGTACTAATTGCAATAAAATAAATAAATAAATATACACTGTACACTTAGATTTGCCAAGTTTTTTTTAAAAAAAAAGAAAATTAAAGAAGCATAAATGACTTTTTTTTGTAAAAGGAAAATTATAAAACATTGTTGGGTTCCCCTATGTTACCATGGTTACATATATATGGATATACGTTGTTCATATTTATGATAAGTGGATAAAAAAAAAGAAGCAGAGAAATATAATTTAAAATGAAGTAAACAAATGAAAACAAGTGATTAGAAAAAAAAGAGGTTGCAGAATCTAGTTAATATTATGATAAACAAATTGAAAGAGAATGTA]




>consensus_4437#0
CCTTTTTTTTTTNAATAAAATTTTATATATATATAAACCGAACAATTATACAAAGGACCG
GCAGAGAGGACATCGAGTGATGAAAGAGAAGTCCAAGTGAATATACTCATTTTACAAATA
AGTATATAGAAATAGATCGAACTAAACATAACGAAAGAGAAAACAATCGAGCAACAACAA
CAAAAAAGAAAAGAGACAATAGTAAAGAAAATTTTATTTACACAGAAATTACACACAAAT
TAGTAATTAAAAAAAGACACTTGAAATTAATTAGATTATTATTATTTTTTTCTTTGGGAA
AGAAAAAAAAAGAAGAACGAAACGAGAGAAAAAAAACTATGTAACCATAATTGAACAAGA
AATGCACTTAGAAAATATAAACAATCCATATGTATATGTATATATATATATGTACTAATT
GCAATAAAATAAATAAATAAATATACACTGTACACTTAGATTTGCCAAGTTTTTTTTAAA
AAAAAAGAAAATTAAAGAAGCATAAATGACTTTTTTTTGTAAAAGGAAAATTATAAAACA
TTGTTGGGTTCCCCTATGTTACCATGGTTACATATATATGGATATACGTTGTTCATATTT
ATGATAAGTGGATAAAAAAAAAGAAGCAGAGAAATATAATTTAAAATGAAGTAAACAAAT
GAAAACAAGTGATTAGAAAAAAAAGAGGTTGCAGAATCTAGTTAATATTATGATAAACAA
ATTGAAAGAGAATGTA

consensusID : consensus_4437#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence

                              [CTTAATGATTGATTTAATTATTGTGATTAGAGTAGACTAAAGTTAAGTGATTAGTATTTAGTTAAGTAGTATATAATGAAGCACTGGAAAACAGATATATTGTAGCGAACAAGAACACAAGTGGGGGACAATCGAATGTATTTAAGCACAAACACTAAATTTTGATAATCATACAGTGAAAAGTTAATTTGCAAAATAACAACCAATTGTCTCAATCTTCACTGTTCCTTCTTCAAATATCAGTCCATCTTCTCCGATTTCATTGTTCATGCATTTTCGTCCCGATTGCGCTTCATTTCTGTTCTTTCCTTATCGGTCTTCTGCCAAAATACATTCTATGTCTGACCATCACCATATACTACTTAAGCGGGTATAAGTAGACCACACCACAATATGTTCCAGTTCAATACTTATTAATAGTTAACAATTTTAAATCTAACTTAAGAATAGGATAGTAATTATAAATTATTCTTCATTAGTAAACTGAGTTTTTTATGCTTATTATGTACA]

[+] EMBL CD201871             [CTTAATGATTGATTTAATTATTGTGATTAGAGTAGACTAAAGTTAAGTGATTAGTATTTAGTTAAGTAGTATATAATGAAGCACTGGAAAACAGATATATTGTAGCGAACAAGAACACAAGTGGGGGACAATCGAATGTATTTAAGCACAAACACTAAATTTTGATAATCATACAGTGAAAAGTTAATTTGCAAAATAACAACCAATTGTCTCAATCTTCACTGTTCCTTCTTCAAATATCAGTCCATCTTCTCCGATTTCATTGTTCATGCATTTTCGTCCCGATTGCGCTTCATTTCTGTTCTTTCCTTATCGGTCTTCTGCCAAAATACATTCTATGTCTGACCATCACCATATACTACTTAAGCGGGTATAAGTAGACCACACCACAATATGTTCCAGTTCAATACTTATTAATAGTTAACAATTTTAAATCTAACTTAAGAATAGGATAGTAATTATAAATTATTCTTCATTAGTAAACTGAGTTTTTTATGCTTATTATGTACA]




>consensus_4437#1
CTTAATGATTGATTTAATTATTGTGATTAGAGTAGACTAAAGTTAAGTGATTAGTATTTA
GTTAAGTAGTATATAATGAAGCACTGGAAAACAGATATATTGTAGCGAACAAGAACACAA
GTGGGGGACAATCGAATGTATTTAAGCACAAACACTAAATTTTGATAATCATACAGTGAA
AAGTTAATTTGCAAAATAACAACCAATTGTCTCAATCTTCACTGTTCCTTCTTCAAATAT
CAGTCCATCTTCTCCGATTTCATTGTTCATGCATTTTCGTCCCGATTGCGCTTCATTTCT
GTTCTTTCCTTATCGGTCTTCTGCCAAAATACATTCTATGTCTGACCATCACCATATACT
ACTTAAGCGGGTATAAGTAGACCACACCACAATATGTTCCAGTTCAATACTTATTAATAG
TTAACAATTTTAAATCTAACTTAAGAATAGGATAGTAATTATAAATTATTCTTCATTAGT
AAACTGAGTTTTTTATGCTTATTATGTACA

consensusID : consensus_4437#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [GAAANGTGTTAGCCAAGAAAATTCAACCAGANTTAACAACCAATGAAGTGATCACTAGTCATGACTCTTCAACAAATGGATTAATTGCATTTATTAAAAATCATCGAAAATAAAATCATCTTTGCCGAACGAAGAAAAAGGGAAAGACAACCGGGNATTNTTAATAGGTTCAATCGTAATCGTAATGACAATTTTNGTGANTAANNTCAATATTTNTNTTTGCTTTAATCTNTTTCTTGATAGTTAGTAGTAAGACTATATTGANGTAGGANAT]

[+] EMBL SM061                [GAAANGTGTTAGCCAAGAAAATTCAACCAGANTTAACAACCAATGAAGTGATCACTAGTCATGACTCTTCAACAAATGGATTAATTGCATTTATTAAAAATCATCGAAAATAAAATCATCTTTGCCGAACGAAGAAAAAGGGAAAGACAACCGGGNATTNTTAATAGGTTCAATCGTAATCGTAATGACAATTTTNGTGANTAANNTCAATATTTNTNTTTGCTTTAATCTNTTTCTTGATAGTTAGTAGTAAGACTATATTGANGTAGGANAT]




>consensus_4437#2
GAAANGTGTTAGCCAAGAAAATTCAACCAGANTTAACAACCAATGAAGTGATCACTAGTC
ATGACTCTTCAACAAATGGATTAATTGCATTTATTAAAAATCATCGAAAATAAAATCATC
TTTGCCGAACGAAGAAAAAGGGAAAGACAACCGGGNATTNTTAATAGGTTCAATCGTAAT
CGTAATGACAATTTTNGTGANTAANNTCAATATTTNTNTTTGCTTTAATCTNTTTCTTGA
TAGTTAGTAGTAAGACTATATTGANGTAGGANAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4437#1      -------------------CTTAATGATTGATTTAATTATTGTGATTAGAGTAGACTAAA 41
consensus_4437#2      ----------------------------------GAAANGTGTTAGCCAAGAAAATTCAA 26
consensus_4437#0      CCTTTTTTTTTTNAATAAAATTTTATATATATATAAACCGAACAATTATACAAAGGACCG 60
                                                         *        *    *  *       

consensus_4437#1      GTTAAGTGATTAGTATTTAGTTAA---GTAGTATATAATGAAGCACTGGA-----AAACA 93
consensus_4437#2      CCAGANT---TAACAACCAATGAA---GTGATCACTAGTCATG-ACTCTT-----CAACA 74
consensus_4437#0      GCAGAGAGGACATCGAGTGATGAAAGAGAAGTCCAAGTGAATATACTCATTTTACAAATA 120
                          *      *        * **   *   *        *   ***         ** *

consensus_4437#1      GATATATTGTAGCGAACAAGAACACAAGTGGGGGACAATCGAATGTATTTAAGCACAAAC 153
consensus_4437#2      AATGGATTA-ATTGCATTT-ATTAAAAATCATCGAAAATAAAAT-CATCTTTGCCGAACG 131
consensus_4437#0      AGTATATAGAAATAGATCGAACTAAACATAACGAAAGAGAAAAC--AATCGAGCAACAAC 178
                        *  **   *    *    *  * *  *     *  *   **   *     **   *  

consensus_4437#1      ACTAAATTTTGATAATCATA----CAGTGAAAAGTTAATTTGCAAAATAACAACCAATTG 209
consensus_4437#2      AAGAAAAAGGGAAAGACA-A----CCGGGNATTNTTAATAGGTTCAATCGTAATCG-TAA 185
consensus_4437#0      AACAAAAAAGAAAAGAGACAATAGTAAAGAAAATTTTATTTACACAGAAATTACACACAA 238
                      *  ***     * *   * *        * *   ** **      *      *       

consensus_4437#1      TCTCAATCTTCACTGTTCCTTCTTCAAAT--ATCAGTCCATCTTCTCCGATTTCATTGTT 267
consensus_4437#2      TGACAATTTTN---GTGANTAANNTCAAT--ATT--TNTNTTTGCTTTAATCTNTTTCTT 238
consensus_4437#0      ATTAGTAATTAAAAAAAGACACTTGAAATTAATTAGATTATTATTATTTTTTTCTTTGGG 298
                              **                ***  **       *         * *  **   

consensus_4437#1      CATGCATTTTCGTCCCGATTGCGCTTCATTTCTGTTCTTTCCTTATCGGTCTTCTGCCAA 327
consensus_4437#2      GATA-GTTAGTAGTAAGACTATA-TTGANGTAGGANAT---------------------- 274
consensus_4437#0      AAAGAAAAAAAAAGAAGAACGAAACGAGAGAAAAAAAACTATGTAACCATAATTGAACAA 358
                       *              **                                          

consensus_4437#1      AATACATTCTATGT-----CTGACCATCACCATATAC-TACTTAAGCGGGTATAAGTAGA 381
consensus_4437#2      ------------------------------------------------------------
consensus_4437#0      GAAATGCACTTAGAAAATATAAACAATCCATATGTATATGTATATATATATATGTACTAA 418
                                                                                  

consensus_4437#1      CCACACCACAATATGTTCCAG----TTCAATACTTATTAATAGTTAACAATTTTAAATCT 437
consensus_4437#2      ------------------------------------------------------------
consensus_4437#0      TTGCAATAAAATAAATAAATAAATATACACTGTACACTTAGATTTGCCAAGTTTTTTTTA 478
                                                                                  

consensus_4437#1      AACTTAAGAATAGGATAGTAATTATAAATTATTCTTCATTAGTAAACTGAGTTTTTTATG 497
consensus_4437#2      ------------------------------------------------------------
consensus_4437#0      AAAAAAAAGAAAATTAAAGAAGCATAAATGACTTTTTTTTGTAAAAGGAAAATTATAAAA 538
                                                                                  

consensus_4437#1      C-TTATTATGTACA---------------------------------------------- 510
consensus_4437#2      ------------------------------------------------------------
consensus_4437#0      CATTGTTGGGTTCCCCTATGTTACCATGGTTACATATATATGGATATACGTTGTTCATAT 598
                                                                                  

consensus_4437#1      ------------------------------------------------------------
consensus_4437#2      ------------------------------------------------------------
consensus_4437#0      TTATGATAAGTGGATAAAAAAAAAGAAGCAGAGAAATATAATTTAAAATGAAGTAAACAA 658
                                                                                  

consensus_4437#1      ------------------------------------------------------------
consensus_4437#2      ------------------------------------------------------------
consensus_4437#0      ATGAAAACAAGTGATTAGAAAAAAAAGAGGTTGCAGAATCTAGTTAATATTATGATAAAC 718
                                                                                  

consensus_4437#1      ------------------
consensus_4437#2      ------------------
consensus_4437#0      AAATTGAAAGAGAATGTA 736