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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4438#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence
[ATGAAATTCGAGAAAAGCTTGCTAAGACCTATAAAACTTCCCCGGATGTCGTTTTNGCATATGGCTTCCGGGCACAGTGGTCATTAAGCCCTCAACTATTTCAAACTTATCATGAATGACCTTAGCCAGAGGTGCTAAACAATTAGTTGTACATGATGCGTTAGAAACCACGGACATAGACTTTTCATACGAATTTTCATTCACACCAACAACGAACATGGGTGCATCTGCAGAAGGTGCAGATATTATGACCTTTTTAGCTCGATTATTTTTAATATGAGCCTGAGCTTTATCAATGGTCGTAAAGACTCCAGTAGACTCAACGACATATTCAGCCCCGTCCTTATCCCACGGGATGTTTGCTGGATCTCTTTCACAATGAACTGATATTAACTTCCCATTGACTTTTAACTTTCCGTTTTCAGTCGAAACCTCGCCTGGAAATGTCCCATGAGTGGAATCACGTTTTATCATGTACACCACATACTATCCACGGTGTTCTTGAGGAAAGCTGCACGAAGTACAAGTCTCCCGATACGACCAAAACCGTTAATACCAACCTTTGCTCTCGACATCTTGAAGTATATCGTACGT]
[-] EMBL CD142715 [ATGAAATTCGAGAAAAGCTTGCTAAGACCTATAAAACTTCCCCGGATGTCGTTTTNGCATATGGCTTCCGGGCACAGTGGTCATTAAGCCCTCAACTATTTCAAACTTATCATGAATGACCTTAGCCAGAGGTGCTAAACAATTAGTTGTACATGATGCGTTAGAAACCACGGACATAGACTTTTCATACGAATTTTCATTCACACCAAC ]
[+] EMBL CD116105 [ AACTATTTCAAACTTATCATGAATGACCTTAGCCAGAGGTGCTAAACAATTAGTTGTACATGATGCGTTAGAAACCACGGACATAGACTTTTCATACGAATTTTCATTCACACCAACAACGAACATGGGTGCATCTGCAGAAGGTGCAGATATTATGACCTTTTTAGCTCGATTATTTTTAATATGAGCCTGAGCTTTATCAATGGTCGTAAAGACTCCAGTAGACTCAACGACATATTCAGCCCCGTCCTTATCCCACGGGATGTTTGCTGGATCTCTTTCACAATGAACTGATATTAACTTCCCATTGACTTTTAACTTTCCGTTTTCAGTCGAAACCTCGCCTGGAAATGTCCCATGAGTGGAATCACGTTTTATCATGTACACCACATACTATCCACGGTGTTCTTGAGGAAAGCTGCACGAAGTACAAGTCTCCCGATACGACCAAAACCGTTAATACCAACCTTTGCTCTCGACATCTTGAAGTATATCGTACGT]
consensusID : consensus_4438#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence
[CTCCCAATCATTAGTTAACGACTTGTAAAACTCTGCATACTCTTCTGTAGTTATATCTTCGGGATTGCGCGTCCAGAGCGGCTTAAGCTTGTTCAACTGTTCTTCCTCAGTATACTTCTCCGTCACCTTCTTTTTTTTCTTCTTCTCCTTATTCTCGTCTTCCTTTCTTCAAGATATTCTAGCTGGTCTTCTTTCAGATGTAATATCACCTTAGTGCCACGTTTCGGCATCTCACTGTCATCTGGTGCAATCGTGAAAGTTCCACCAGCGGACGAATCCCAAATGTACTGGTCGTCATCATTATTCTTCGTCA]
[+] EMBL CD165853 [CTCCCAATCATTAGTTAACGACTTGTAAAACTCTGCATACTCTTCTGTAGTTATATCTTCGGGATTGCGCGTCCAGAGCGGCTTAAGCTTGTTCAACTGTTCTTCCTCAGTATACTTCTCCGTCACCTTCTTTTTTTTCTTCTTCTCCTTATTCTCGTCTTCCTTTCTTCAAGATATTCTAGCTGGTCTTCTTTCAGATGTAATATCACCTTAGTGCCACGTTTCGGCATCTCACTGTCATCTGGTGCAATCGTGAAAGTTCCACCAGCGGACGAATCCCAAATGTACTGGTCGTCATCATTATTCTTCGTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4438#0 ATGAAATTCGAGAAAAGCTTGCTAAGACCTATAAAACTTCCCCGGATGTCGTTTTNGCAT 60
consensus_4438#1 ------------------------------------------------------------
consensus_4438#0 ATGGCTTCCGGGCACAGTGGTCATTAAGCCCTCAACTATTTCAAACTTATCATGAATGAC 120
consensus_4438#1 ------------------------------------------------------------
consensus_4438#0 CTTAGCCAGAGGTGCTAAACAATTAGTTGTACATGATGCGTTAGAAACCACGGACATAGA 180
consensus_4438#1 --------------------------CTCCCAATCATTAGTTA---ACGACTTGTA-AAA 30
* ** ** **** ** ** * * *
consensus_4438#0 CTTTTCATACGAATTTTCATTCACACCAACAACGAACATGGGTGCATCTGCAGAAGGTGC 240
consensus_4438#1 CTCTGCATACTCTTCTGTAGTTATATCTTCGG-------GATTGCGCGTCCAGA----GC 79
** * ***** * * * * * * * * * *** * **** **
consensus_4438#0 AGATATTATGACCTTTTTAGCTCGATTATTTTTAATATGAGCCTGAGCTTTATCAATGGT 300
consensus_4438#1 GGCT----TAAGCTTGTTCAACTGTTCTTCCTCAGTATA---------CTTCTCCGTCAC 126
* * * * *** ** * * * * * *** ** ** *
consensus_4438#0 CGTAAAGACTCCAGTAGACTCAACGACATATTCAGCCCCGTCCTTATCCCACGGGATGTT 360
consensus_4438#1 CTT-----CTTTTTTTTCTTCTTCTCCTTATTCT-CGTCTTCCTTTCTTCAAGATATTCT 180
* * ** * ** * * ***** * * ***** ** * ** *
consensus_4438#0 TGCTGGATCTCTTTCACAATGAACTGATATTAACTTCCCATTGACTTTTAACTTTCCGTT 420
consensus_4438#1 AGCTGGTCTTCTTTCA----GATGTAATATCACCTTAGTGCCACGTTTCGGCATCTCACT 236
***** ******* ** * **** * *** *** * * * *
consensus_4438#0 TTCAGTCGAAACCTCGCCTGGAAATGTCCCATGAGTGGAATCACGTTTTATCATGTACAC 480
consensus_4438#1 GTCATCTGGTGC---AATCGTGAAAGTTCCACCAGCGGACGAA-----TCCCAAATGTAC 288
*** * * * ** ** *** ** *** * * ** * **
consensus_4438#0 CACATACTATCCACGGTGTTCTTGAGGAAAGCTGCACGAAGTACAAGTCTCCCGATACGA 540
consensus_4438#1 TGGTCGTCATCATTATTCTTCGTCA----------------------------------- 313
*** * *** * *
consensus_4438#0 CCAAAACCGTTAATACCAACCTTTGCTCTCGACATCTTGAAGTATATCGTACGT 594
consensus_4438#1 ------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||