cluster # 4441

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Schistosoma mansoni
cluster # 4441 cluster # 4441 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4441#0 length = 463 sequences # 1

consensus_4441#1 length = 379 sequences # 2

consensusID : consensus_4441#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [GTCCGCATCGGCTACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGTCATTTGTGATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCGAACGTCACCTCAATCTGAGGAGTACCACGAGGAGCAGGTGGGATACCTGATAGTTCGAACTTACCAAGCAGATTGTTGTCCTTAGTCAGTGCACGCCCGCCCTCGAACACCTGGATAAGCACACCAGGTTGGTTGTCCGAGTACGTCGTGAACGTTTGAGTCTGTTTCGTCGGAATTGTCGTGTTACGCTTAATCAAAGCCGTCATCACACCTCCAGCCGTTTCAAGACCCAATGATGGTGCAGCTGTGCAGGCAGCTATTCTAAGTGGTGATAAGTGTGAGGCTGTGCAGGACTTGTTGTTGCTTGACGTAGCTCCACTATCATTG]

[+] EMBL CD111686             [GTCCGCATCGGCTACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGTCATTTGTGATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCGAACGTCACCTCAATCTGAGGAGTACCACGAGGAGCAGGTGGGATACCTGATAGTTCGAACTTACCAAGCAGATTGTTGTCCTTAGTCAGTGCACGCCCGCCCTCGAACACCTGGATAAGCACACCAGGTTGGTTGTCCGAGTACGTCGTGAACGTTTGAGTCTGTTTCGTCGGAATTGTCGTGTTACGCTTAATCAAAGCCGTCATCACACCTCCAGCCGTTTCAAGACCCAATGATGGTGCAGCTGTGCAGGCAGCTATTCTAAGTGGTGATAAGTGTGAGGCTGTGCAGGACTTGTTGTTGCTTGACGTAGCTCCACTATCATTG]




>consensus_4441#0
GTCCGCATCGGCTACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGTCATTTGT
GATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACC
GTTCGCATCTATATCGAACGTCACCTCAATCTGAGGAGTACCACGAGGAGCAGGTGGGAT
ACCTGATAGTTCGAACTTACCAAGCAGATTGTTGTCCTTAGTCAGTGCACGCCCGCCCTC
GAACACCTGGATAAGCACACCAGGTTGGTTGTCCGAGTACGTCGTGAACGTTTGAGTCTG
TTTCGTCGGAATTGTCGTGTTACGCTTAATCAAAGCCGTCATCACACCTCCAGCCGTTTC
AAGACCCAATGATGGTGCAGCTGTGCAGGCAGCTATTCTAAGTGGTGATAAGTGTGAGGC
TGTGCAGGACTTGTTGTTGCTTGACGTAGCTCCACTATCATTG

consensusID : consensus_4441#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 379
fasta sequence

                              [TGTCTGGNAGAAAGCGAGCATTCTGGTAGAACGAGCATTCAACTCCTCAAATCGTGCACGAGTGATCACCGTGTAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTTGTCTGGGCACTCGAACTCAATGTACGTTTCGCACGCTCACACGCTGTCCTCAGACGACGCAATGCACGCTTATTGCTACGAATGTCTTTATTGTATTTCTTCTGGAACTCTTTCACAAAGTGATCCACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGTCATTTGTGATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCAAACGTCACCTCAATC]

[+] EMBL CD062898             [TGTCTGGNAGAAAGCGAGCATTCTGGTAGAACGAGCATTCAACTCCTCAAATCGTGCACGAGTGATCACCGTGTAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTTGTCTGGGCACTCGAACTCAATGTACGTTTCGCACGCTCACACGCTGTCCTC                                                                                                                                                                                                                     ]
[+] EMBL CD112419             [                                      TCAACTCCTCAAATCGTGCACGAGTGATCACCGTGTAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTCTGGGCACTCGAACTCGATGTACGTTTCGCACGTTCACACGCTGTCCTCAGACGACGCAATGCACGCTTATTGCTACGAATGTCTTTATTGTATTTCTTCTGGAACTCTTTCACAAAGTGATCCACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGTCATTTGTGATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCAAACGTCACCTCAATC]




>consensus_4441#1
TGTCTGGNAGAAAGCGAGCATTCTGGTAGAACGAGCATTCAACTCCTCAAATCGTGCACG
AGTGATCACCGTGTAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTTGTCTG
GGCACTCGAACTCAATGTACGTTTCGCACGCTCACACGCTGTCCTCAGACGACGCAATGC
ACGCTTATTGCTACGAATGTCTTTATTGTATTTCTTCTGGAACTCTTTCACAAAGTGATC
CACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGTCATTTGTGATCGTTATCTT
GTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTAT
ATCAAACGTCACCTCAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4441#0      GTCCGCATCGGCTACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGTCATTTGT 60
consensus_4441#1      ------------------------------------------------------------
                                                                                  

consensus_4441#0      GATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACC 120
consensus_4441#1      -----------TGT-CTGGNAGAAAGCGAGCATTCTGGTAGAACGAGCATTCA----ACT 44
                                 *** ***      **    * *      ** *    * ****    ** 

consensus_4441#0      GTTCGCATCTATATCGAACG-TCACCTCAATCTGAGGAGTACCACGAGG-AGCAGGTGGG 178
consensus_4441#1      CCTCAAATCGTGCACGAGTGATCACCGTGTAAAAATCAATACCATCACACAACGAGTCAA 104
                        **  ***     ***  * *****        *  * *****  *   * *  **   

consensus_4441#0      ATACCTGATAGTTCGAACTTACCAAGCAGATTGTTGTCCTTAGTCAGTGCACGC-CCGCC 237
consensus_4441#1      TCTCCAGATTTGTCTGGGCACTCGAACTCAATGT-ACGTTTCGCACGCTCACACGCTGTC 163
                         ** ***   **        * * *  * ***     ** *   *  *** * * * *

consensus_4441#0      CTCGAACACCTGGATAAGCACACCAGGTTGGTTGTCCGAGTACGTCGTGAACGTT-TGAG 296
consensus_4441#1      CTCAGACGACGCAAT--GCACGCTTATTGCTACGAATGTCTTTATTGTATTTCTTCTGGA 221
                      ***  **  *   **  **** *    *     *   *  *   * **     ** **  

consensus_4441#0      TCTGTTTCGTCGGAATTGTCGTGTTACGCTTAATCAAAGCCGTCATCACAC--CTCCAGC 354
consensus_4441#1      ACTCTTTCACAAAGTGATCCACCATCCGCTCAATCTCCTCTTTCGACAAACGACCCTTGT 281
                       ** ****           *    * **** ****    *  **  ** **  * *  * 

consensus_4441#0      CGTTTCAAGACCCAATGATGGTGCAGCTGTGCAGGCAGCTATTCTAAGTGGTGATAAGTG 414
consensus_4441#1      CATTTGTGATCGTTATCTTGTT-CTGCT-TCCCAGTACCCTTGTCAACAGCAGATACGTT 339
                      * ***     *   **  ** * * *** * *  * * *  *   **  *  **** ** 

consensus_4441#0      TGAGGCTGTGCAGGACTTGTTGTTGCTTGACGTAGCTCCACTATCATTG 463
consensus_4441#1      CAGAA---TACCGTTCGCATCTATATCAAACGTCACCTCAATC------ 379
                              * * *  *   *   *     ****  *  ** *