cluster # 4446

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Schistosoma mansoni
cluster # 4446 cluster # 4446 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4446#0 length = 492 sequences # 1

consensus_4446#1 length = 483 sequences # 1
consensus_4446#2 length = 364 sequences # 1

consensusID : consensus_4446#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [TCAGATTCCTCCTTCCCTTTAGGATATAACTTTTCGTACACTGTAACACTTTCAGGCAAAATATTGCTACTATCGAATTTTCCAACATTATCTTTTTCATCACTATCTTCAATCTCTTCTTGAACAAGCACAATTTCTCGTTTACGTCGTCGGCTTTCAGAACGTTCAAAGTTAAAACGATTCGGTTTTCTTGAAGTATATTCAGGTCCCATATATCCTAGTAGTTCAGCATCGTGAGATTCAGTGAAGCTAATAAAATGGAAGCCCAATAATCCGTATCAAGATAATCACATATCCTTTCACTTTTACTAACTTGTAAACTATCTAAATTAGTCGAAACGCATAAACTAAGCGTGACTTGAGCTAAACCTTCTTCAGTCATAAACGCTTCTTGACGAATAATACCAATTGTTTGTTTATCAGGCAATACAAACGCCGATTGATACTCACGTTTAATTTTTTTGCCAAAGCCACGGCCAACCCACAATCGAA]

[+] EMBL CD165807             [TCAGATTCCTCCTTCCCTTTAGGATATAACTTTTCGTACACTGTAACACTTTCAGGCAAAATATTGCTACTATCGAATTTTCCAACATTATCTTTTTCATCACTATCTTCAATCTCTTCTTGAACAAGCACAATTTCTCGTTTACGTCGTCGGCTTTCAGAACGTTCAAAGTTAAAACGATTCGGTTTTCTTGAAGTATATTCAGGTCCCATATATCCTAGTAGTTCAGCATCGTGAGATTCAGTGAAGCTAATAAAATGGAAGCCCAATAATCCGTATCAAGATAATCACATATCCTTTCACTTTTACTAACTTGTAAACTATCTAAATTAGTCGAAACGCATAAACTAAGCGTGACTTGAGCTAAACCTTCTTCAGTCATAAACGCTTCTTGACGAATAATACCAATTGTTTGTTTATCAGGCAATACAAACGCCGATTGATACTCACGTTTAATTTTTTTGCCAAAGCCACGGCCAACCCACAATCGAA]




>consensus_4446#0
TCAGATTCCTCCTTCCCTTTAGGATATAACTTTTCGTACACTGTAACACTTTCAGGCAAA
ATATTGCTACTATCGAATTTTCCAACATTATCTTTTTCATCACTATCTTCAATCTCTTCT
TGAACAAGCACAATTTCTCGTTTACGTCGTCGGCTTTCAGAACGTTCAAAGTTAAAACGA
TTCGGTTTTCTTGAAGTATATTCAGGTCCCATATATCCTAGTAGTTCAGCATCGTGAGAT
TCAGTGAAGCTAATAAAATGGAAGCCCAATAATCCGTATCAAGATAATCACATATCCTTT
CACTTTTACTAACTTGTAAACTATCTAAATTAGTCGAAACGCATAAACTAAGCGTGACTT
GAGCTAAACCTTCTTCAGTCATAAACGCTTCTTGACGAATAATACCAATTGTTTGTTTAT
CAGGCAATACAAACGCCGATTGATACTCACGTTTAATTTTTTTGCCAAAGCCACGGCCAA
CCCACAATCGAA

consensusID : consensus_4446#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [AAACTATCTAAATTAGTCGAAACGCATAAACTAAGCGTGACTTGAGATAAACCTTCTTCAGTCATAAACGCTTCTTGACGAATAATACCAATTGTTTGTTTATCAGGCAATACAAACGCCGATTGATACTCACGTTTAATTTTTTTGCCAACAAATGCAATCGATGAAGAAGAGTCTGTTTGTAATGAACGAAAACTTAATCCATTTAATGGCAAAATATTCTCATCTCCGACTTGGTCACCAACAGAGACACTTGTTTGTAAATTAGTCTCTCTTGGCGATTGATTAGAAAAAATCAACACAAATGGAGATTTATCCTCATCGAGTACAATTGACATTAATGACCCTAGAAACATAGATAGACTGTTGTAACGTCCATCTTGTCGGCGTATATTGCTTGCTGTCCAGACTGTAGTCATTTCGTTATTGCTTAACTTAGAAACCACCTTTCACAGGTTACCTGAAGACCACAGAAGGGAAAGT]

[-] EMBL CD113977             [AAACTATCTAAATTAGTCGAAACGCATAAACTAAGCGTGACTTGAGATAAACCTTCTTCAGTCATAAACGCTTCTTGACGAATAATACCAATTGTTTGTTTATCAGGCAATACAAACGCCGATTGATACTCACGTTTAATTTTTTTGCCAACAAATGCAATCGATGAAGAAGAGTCTGTTTGTAATGAACGAAAACTTAATCCATTTAATGGCAAAATATTCTCATCTCCGACTTGGTCACCAACAGAGACACTTGTTTGTAAATTAGTCTCTCTTGGCGATTGATTAGAAAAAATCAACACAAATGGAGATTTATCCTCATCGAGTACAATTGACATTAATGACCCTAGAAACATAGATAGACTGTTGTAACGTCCATCTTGTCGGCGTATATTGCTTGCTGTCCAGACTGTAGTCATTTCGTTATTGCTTAACTTAGAAACCACCTTTCACAGGTTACCTGAAGACCACAGAAGGGAAAGT]




>consensus_4446#1
AAACTATCTAAATTAGTCGAAACGCATAAACTAAGCGTGACTTGAGATAAACCTTCTTCA
GTCATAAACGCTTCTTGACGAATAATACCAATTGTTTGTTTATCAGGCAATACAAACGCC
GATTGATACTCACGTTTAATTTTTTTGCCAACAAATGCAATCGATGAAGAAGAGTCTGTT
TGTAATGAACGAAAACTTAATCCATTTAATGGCAAAATATTCTCATCTCCGACTTGGTCA
CCAACAGAGACACTTGTTTGTAAATTAGTCTCTCTTGGCGATTGATTAGAAAAAATCAAC
ACAAATGGAGATTTATCCTCATCGAGTACAATTGACATTAATGACCCTAGAAACATAGAT
AGACTGTTGTAACGTCCATCTTGTCGGCGTATATTGCTTGCTGTCCAGACTGTAGTCATT
TCGTTATTGCTTAACTTAGAAACCACCTTTCACAGGTTACCTGAAGACCACAGAAGGGAA
AGT

consensusID : consensus_4446#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [ATCGGCTTGTCTGAGAATCACATTCCTCCTTCCCTTTAGGATATAACTTTTCGTACACTGTAACACTTTCAGGCAAAATATTGCTACTATCGAATTTTCCAACACTATCTCTTATACATCTATCTAAATTCCTGTAGACANNACTNCATGNNNTTGGTTACGGCGGCGGGTTTTAAGAACGTTCAAAGTTAAAACGATTCGGTTTTCTTGACTTATATTCAGGTCCCATATATCCAATATCACACTTGGANNNAAGATACGGGNGGAAGCTAATAAAATGGAAGCCCAATAATCCGTATCAAGATAATCACATATCCTTTCACTTTTACTAANCTTGTAACTATCTAAATTAGTCGAAACGCAT]

[+] EMBL CD093173             [ATCGGCTTGTCTGAGAATCACATTCCTCCTTCCCTTTAGGATATAACTTTTCGTACACTGTAACACTTTCAGGCAAAATATTGCTACTATCGAATTTTCCAACACTATCTCTTATACATCTATCTAAATTCCTGTAGACANNACTNCATGNNNTTGGTTACGGCGGCGGGTTTTAAGAACGTTCAAAGTTAAAACGATTCGGTTTTCTTGACTTATATTCAGGTCCCATATATCCAATATCACACTTGGANNNAAGATACGGGNGGAAGCTAATAAAATGGAAGCCCAATAATCCGTATCAAGATAATCACATATCCTTTCACTTTTACTAANCTTGTAACTATCTAAATTAGTCGAAACGCAT]




>consensus_4446#2
ATCGGCTTGTCTGAGAATCACATTCCTCCTTCCCTTTAGGATATAACTTTTCGTACACTG
TAACACTTTCAGGCAAAATATTGCTACTATCGAATTTTCCAACACTATCTCTTATACATC
TATCTAAATTCCTGTAGACANNACTNCATGNNNTTGGTTACGGCGGCGGGTTTTAAGAAC
GTTCAAAGTTAAAACGATTCGGTTTTCTTGACTTATATTCAGGTCCCATATATCCAATAT
CACACTTGGANNNAAGATACGGGNGGAAGCTAATAAAATGGAAGCCCAATAATCCGTATC
AAGATAATCACATATCCTTTCACTTTTACTAANCTTGTAACTATCTAAATTAGTCGAAAC
GCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4446#0      -----------------------TCAGATTCCTCCTTCCCTTTAGGATATAACTTTTCGT 37
consensus_4446#2      ------ATCGGCTTGTCTGAGAATCACATTCCTCCTTCCCTTTAGGATATAACTTTTCGT 54
consensus_4446#1      AAACTATCTAAATTAGTCGAAACGCATAAACTAAGCGTGACTTGAGATA-AACCTTCTTC 59
                                              ** *  *          **  **** *** **    

consensus_4446#0      ACACTGTAACACTTTCAGGCAAAATATTGCTACTATCGAATTTTC---CAACATTATCTT 94
consensus_4446#2      ACACTGTAACACTTTCAGGCAAAATATTGCTACTATCGAATTTTC---CAACACTATCTC 111
consensus_4446#1      AGTCATAAACGCTTCTTGACGAATAATACCAATTGTTTGTTTATCAGGCAATACAAACGC 119
                      *  *   *** ***   * * **  **  * * * *    ** **   *** *  * *  

consensus_4446#0      TTTC--ATCACTATCTTCAATCTCTTCTTGAACAAGCACAATTTCTCGTTTACGTCGTCG 152
consensus_4446#2      TTAT--ACATCTATCTA-AATTCCTGTAGACANNACTNCATGNNNTTGGTTACGGCGGCG 168
consensus_4446#1      CGATTGATACTCACGTTTAATTTTTTTGCCAACAAATGCAATCGAT-GAAGAAGAGTCTG 178
                            *     *  *  ***   *      *  *   **     * *   * *     *

consensus_4446#0      GCTTTCA-GAACGTTCAAAGTTAAAACGATTCGGTTTTCTTGAAGTATATTCAGGTCCCA 211
consensus_4446#2      GGTTTTAAGAACGTTCAAAGTTAAAACGATTCGGTTTTCTTGACTTATATTCAGGTCCCA 228
consensus_4446#1      TTTGTAATGAACG---AAAACTTAATCCATTTAATG---GCAAAATATTCTCATCTCCGA 232
                        * * * *****   ***  * ** * ***   *       *  ***  ***  *** *

consensus_4446#0      TATATCC--TAGTA---------GTTCAGCATCGTGAGATTCAGTGAAGCTAATAAAATG 260
consensus_4446#2      TATATCCAATATCAC--------ACTTGGANNNAAGATACGGGNGGAAGCTAATAAAATG 280
consensus_4446#1      CTTGGTCACCAACAGAGACACTTGTTTGTAAATTAGTCTCTCTTGGCGATTGATTAGAAA 292
                        *   *   *  *           *         *         *    * ** * *  

consensus_4446#0      GAAGCCCAATAATCCGTA--TCAAGATAATCACATATCCTTTCACTTTTACTAACTTGTA 318
consensus_4446#2      GAAGCCCAATAATCCGTA--TCAAGATAATCACATATCCTTTCACTTTTACTAANCTTGT 338
consensus_4446#1      AAATCAACACAAATGGAGATTTATCCTCATCGAGTA-CAATTGACATTAATGACCCTAGA 351
                       ** *   * **   *    * *   * ***   ** *  ** ** ** *  *   *   

consensus_4446#0      AAC-TATCTAAATTAGTCGAAACG--CATAAACTAAGCGTGACTTGAGCTAAACCTTCTT 375
consensus_4446#2      AAC-TATCTAAATTAGTCGAAACG--CAT------------------------------- 364
consensus_4446#1      AACATAGATAGACT-GTTGTAACGTCCATCTTGTCGGCGTATATTGCTTGCTGTCCAGAC 410
                      *** **  ** * * ** * ****  ***                               

consensus_4446#0      CAGTCATAAACGCTTCTTGACGAATAATACCAATTGTTTGTTTATCAGGCAATACAAACG 435
consensus_4446#2      ------------------------------------------------------------
consensus_4446#1      TGTAGTCATTTCGTTATTGCTTAACTTAGAAACCACCTTTCACAGGTTACCTGAAGACCA 470
                                                                                  

consensus_4446#0      CCGATTGATACTCACGTTTAATTTTTTTGCCAAAGCCACGGCCAACCCACAATCGAA 492
consensus_4446#2      ---------------------------------------------------------
consensus_4446#1      CAGAAGGGAAAGT-------------------------------------------- 483