cluster # 4447

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Schistosoma mansoni
cluster # 4447 cluster # 4447 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4447#0 length = 672 sequences # 2

consensus_4447#1 length = 333 sequences # 1

consensusID : consensus_4447#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 672
fasta sequence

                              [ACGTTTAAATGAAGCTGAATCAGAATTAAATATACTCTTATCAGAAAGTTATTCGATATCAAATAACGACTCCCTTCAAAAGAATACTAATTTAGAAGAAAATTCCACCGAAGTCAAAATTACGCCTGATGATGAGGGTGCAAATTACCTGGAAGCGAAAAAACTAGAAAATACCACACATTCGGTTTCTGAAAGTGACACTGGTCATTGTTCTAATATTGTGTGGTGTACTGGAAATTCTGTGTATTTCCTTCAAGCTCAGCTAGCTTTTCTGAAGGGTCAGTATAGTGTTGCCATCAAATTGCTTATTTCTATGCCATCACCTTCTTATAATTCAACTGCTATGCATGATTTAGAGTCTGTTATTTTAAAGAATAATCTTTCCTTGATTTATCATCGCACTGGTCGATGTACCTCTGGTTTGATACAAATTCGTCATGCTTTAAAACAAATCGACAAAACAATCAGAACTGCTGTACAATCAGAAGAAAAAAATGTGTCTTATTTACTCAATCATCAAAATGGTTGCTCCTCTTTAGTTGAATATTCTGAATTGTTTAACCAGATTCCACTACATGTATCCAGTCTACTTGAACATTACGAATTAATTTATAATTATGGGATACAATTGTTATTCACTAATAGACCTTCAGAAGCATTCTCTACATTATC]

[+] EMBL CD154018             [ACGTTTAAATGAAGCTGAATCAGAATTAAATATACTCTTATCAGAAAGTTATTCGATATCAAATAACGACTCCCTTCAAAAGAATACTAATTTAGAAGAAAATTCCACCGAAGTCAAAATTACGCCTGATGATGAGGGTGCAAATTACCTGGAAGCGAAAAAACTAGAAAATACCACACATTCGGTTTCTGAAAGTGACACTGGTCATTGTTCTAATATTGTGTGGTGTACTGGAAATTCTGTGTATTTCCTTCAAGCTCAGCTAGCTTTTCTGAAGGGTCAGTATAGTGTTGCCATCAAATTGCTTATTTCTATGCCATCACCTTCTTATAATTCAACTGCTATGCATGATTTAGAGTCTGTTATTTTAAAGAATAATCTTTCCTTGATTTATCATCGCACTGGTCGATGTACCTCTGGTTTGATACAAATTCGTCATGCTTTAAAACAAATCGACAAAACAATCAGAACTGCTGTACAATC                                                                                                                                                                                             ]
[+] EMBL CD118674             [                                                                                                                                                                                                                                                                                                     CCATCAAATTGCTTATTTCTAAGCCATCACCTTCTTATAATTCAACTGCTATGCATGATTTAGAGTCTGTTATTTTAAAGAATAATCTTTCCTTGATTTATCATCGCACTGGTCGATGTACCTCTGGTTTGATACAAATTCGTCATGCTTTAAAACAAATCGACAAAACAATCAGAACTGCTGTACAATCAGAAGAAAAAAATGTGTCTTATTTACTCAATCATCAAAATGGTTGCTCCTCTTTAGTTGAATATTCTGAATTGTTTAACCAGATTCCACTACATGTATCCAGTCTACTTGAACATTACGAATTAATTTATAATTATGGGATACAATTGTTATTCACTAATAGACCTTCAGAAGCATTCTCTACATTATC]




>consensus_4447#0
ACGTTTAAATGAAGCTGAATCAGAATTAAATATACTCTTATCAGAAAGTTATTCGATATC
AAATAACGACTCCCTTCAAAAGAATACTAATTTAGAAGAAAATTCCACCGAAGTCAAAAT
TACGCCTGATGATGAGGGTGCAAATTACCTGGAAGCGAAAAAACTAGAAAATACCACACA
TTCGGTTTCTGAAAGTGACACTGGTCATTGTTCTAATATTGTGTGGTGTACTGGAAATTC
TGTGTATTTCCTTCAAGCTCAGCTAGCTTTTCTGAAGGGTCAGTATAGTGTTGCCATCAA
ATTGCTTATTTCTATGCCATCACCTTCTTATAATTCAACTGCTATGCATGATTTAGAGTC
TGTTATTTTAAAGAATAATCTTTCCTTGATTTATCATCGCACTGGTCGATGTACCTCTGG
TTTGATACAAATTCGTCATGCTTTAAAACAAATCGACAAAACAATCAGAACTGCTGTACA
ATCAGAAGAAAAAAATGTGTCTTATTTACTCAATCATCAAAATGGTTGCTCCTCTTTAGT
TGAATATTCTGAATTGTTTAACCAGATTCCACTACATGTATCCAGTCTACTTGAACATTA
CGAATTAATTTATAATTATGGGATACAATTGTTATTCACTAATAGACCTTCAGAAGCATT
CTCTACATTATC

consensusID : consensus_4447#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [CAAAACAATCAGAAGTGCTGTACAATCAGAAGAAAAAAATGTGTCTTATTTACTCAATCATCAAAATGGTTGCTCCTCTTTAGTTGAATATTATGAATTGTTTAACCAGGTAAGTGCATTTATCCCTTCGTTTGTTATTGAAAAAAAAACAAGCTAATCTCTGAAGCATAATGAATTAGTGACCAAGTAAAGATCACCATTCTTTAATCATCAATTAATTGATCATAATGAAAAAGTTAATCTCAACCTTTTAACCATTAATATAAATGTTTGATGTGTTCCTGTTTTTTATGACCCCTCCATTTCACACACTTTCAACTTATAATTGTAGTA]

[-] EMBL CD067274             [CAAAACAATCAGAAGTGCTGTACAATCAGAAGAAAAAAATGTGTCTTATTTACTCAATCATCAAAATGGTTGCTCCTCTTTAGTTGAATATTATGAATTGTTTAACCAGGTAAGTGCATTTATCCCTTCGTTTGTTATTGAAAAAAAAACAAGCTAATCTCTGAAGCATAATGAATTAGTGACCAAGTAAAGATCACCATTCTTTAATCATCAATTAATTGATCATAATGAAAAAGTTAATCTCAACCTTTTAACCATTAATATAAATGTTTGATGTGTTCCTGTTTTTTATGACCCCTCCATTTCACACACTTTCAACTTATAATTGTAGTA]




>consensus_4447#1
CAAAACAATCAGAAGTGCTGTACAATCAGAAGAAAAAAATGTGTCTTATTTACTCAATCA
TCAAAATGGTTGCTCCTCTTTAGTTGAATATTATGAATTGTTTAACCAGGTAAGTGCATT
TATCCCTTCGTTTGTTATTGAAAAAAAAACAAGCTAATCTCTGAAGCATAATGAATTAGT
GACCAAGTAAAGATCACCATTCTTTAATCATCAATTAATTGATCATAATGAAAAAGTTAA
TCTCAACCTTTTAACCATTAATATAAATGTTTGATGTGTTCCTGTTTTTTATGACCCCTC
CATTTCACACACTTTCAACTTATAATTGTAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4447#0      ACGTTTAAATGAAGCTGAATCAGAATTAAATATACTCTTATCAGAAAGTTATTCGATATC 60
consensus_4447#1      ------------------------------------------------------------
                                                                                  

consensus_4447#0      AAATAACGACTCCCTTCAAAAGAATACTAATTTAGAAGAAAATTCCACCGAAGTCAAAAT 120
consensus_4447#1      ------------------------------------------------------------
                                                                                  

consensus_4447#0      TACGCCTGATGATGAGGGTGCAAATTACCTGGAAGCGAAAAAACTAGAAAATACCACACA 180
consensus_4447#1      ------------------------------------------------------------
                                                                                  

consensus_4447#0      TTCGGTTTCTGAAAGTGACACTGGTCATTGTTCTAATATTGTGTGGTGTACTGGAAATTC 240
consensus_4447#1      ------------------------------------------------------------
                                                                                  

consensus_4447#0      TGTGTATTTCCTTCAAGCTCAGCTAGCTTTTCTGAAGGGTCAGTATAGTGTTGCCATCAA 300
consensus_4447#1      ------------------------------------------------------------
                                                                                  

consensus_4447#0      ATTGCTTATTTCTATGCCATCACCTTCTTATAATTCAACTGCTATGCATGATTTAGAGTC 360
consensus_4447#1      ---------------------------------CAAAACAATCAGAAGTGCTGTACAATC 27
                                                          ***    *    ** * ** * **

consensus_4447#0      TGTTATTTTAAAGAATAATCTTTCCTTGATTTATCATCGCACTGGTCGATGTACCTCTGG 420
consensus_4447#1      AGAAGA---AAAAAATGTGTCTTATTTACTCAATCATCAAAATGGTTGCT-CCTCTTTAG 83
                       *       *** ***     **  **  *  ******  * **** * *    ** * *

consensus_4447#0      TTTGATACAAATTCGTCATGCTTTAAAACAAATCGACAAAACAATCAGAACTGCTGTACA 480
consensus_4447#1      TTGAATA-----TTATGAATTGTTTAACCAGGTAAGTGCATTTATC----CCTTCGTTTG 134
                      **  ***     *  * *    ** ** **  *      *   ***    *    **   

consensus_4447#0      ATCAGAAGAAAAAAATGTGTCTTATTTACTCAATCATCA-AAATGGTTGCTCCTCTTTAG 539
consensus_4447#1      TTATTGAAAAAAAAACAAG--CTAATCTCTGAAGCATAATGAATTAGTGACCAAGTAAAG 192
                       *    * *******   *   ** *  ** ** *** *  ***   **  *   *  **

consensus_4447#0      TTGAATATTCTGAATTGTTTAACCAGATTCCACTACATGTATCCAGTCTACTTGAACATT 599
consensus_4447#1      ATCACCATTCTTTAATCATCAATTAA--TTGATCATAATGAAAAAGTTAATCTCAACCTT 250
                       * *  *****  * *  * **  *   *  *  * *   *   ***  *  * *** **

consensus_4447#0      ACGA--ATTAATTTATAATTATGGGATACAATTGTTATTCACTAATAGACCTTCAGAAGC 657
consensus_4447#1      TTAACCATTAATATAAATGTTTGATGTGTTCCTGTTTTTTATGACCCCTCCATTTCACAC 310
                         *  ****** ** *  * **   *     **** ** *  *     ** *   *  *

consensus_4447#0      ATTCTCTAC--ATTATC------ 672
consensus_4447#1      ACTTTCAACTTATAATTGTAGTA 333
                      * * ** **  ** **