cluster # 446

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Schistosoma mansoni
cluster # 446 cluster # 446 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_446#0 length = 308 sequences # 1

consensus_446#1 length = 166 sequences # 1

consensusID : consensus_446#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence

                              [GAGATCATGACACGCGGGCGCACGGATTACCGTCTGTTCCGGTAAAGCCCTTTAAAGAACGGAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCAAACAGTTGTCCCTCTGGCTCCGCGGTCACGCTCTCAAGTCGGTAAGACCAATATTAATCCAAATCTCTTCTCAGGTCTCTCAAGAAATACCCTTTGACGGTTTGGGCAGCCGGAAAGTGATATCAGCCCTCATACCCGTAACAACACACGAGACCAAGTTGGTCACATTCAAATCCTTCCTACACCTAATAACTC]

[+] EMBL CD149765             [GAGATCATGACACGCGGGCGCACGGATTACCGTCTGTTCCGGTAAAGCCCTTTAAAGAACGGAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCAAACAGTTGTCCCTCTGGCTCCGCGGTCACGCTCTCAAGTCGGTAAGACCAATATTAATCCAAATCTCTTCTCAGGTCTCTCAAGAAATACCCTTTGACGGTTTGGGCAGCCGGAAAGTGATATCAGCCCTCATACCCGTAACAACACACGAGACCAAGTTGGTCACATTCAAATCCTTCCTACACCTAATAACTC]




>consensus_446#0
GAGATCATGACACGCGGGCGCACGGATTACCGTCTGTTCCGGTAAAGCCCTTTAAAGAAC
GGAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCAAACAGTT
GTCCCTCTGGCTCCGCGGTCACGCTCTCAAGTCGGTAAGACCAATATTAATCCAAATCTC
TTCTCAGGTCTCTCAAGAAATACCCTTTGACGGTTTGGGCAGCCGGAAAGTGATATCAGC
CCTCATACCCGTAACAACACACGAGACCAAGTTGGTCACATTCAAATCCTTCCTACACCT
AATAACTC

consensusID : consensus_446#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 166
fasta sequence

                              [TAACGTTCCGTGTACTTGAATCGTTTGCCCTTTCGGTGCGAGGTGATAAAAGGACGTGGGAAGGGTTAGTCTTGGAGATAAGAGAGCTATTAAGAGGTGTATGAAGGATTTGAAGTGACCAACTTGGTCTCGTGTGCTGTTACAGGTATGAAGGCTGATATCACTT]

[+] EMBL CD066526             [TAACGTTCCGTGTACTTGAATCGTTTGCCCTTTCGGTGCGAGGTGATAAAAGGACGTGGGAAGGGTTAGTCTTGGAGATAAGAGAGCTATTAAGAGGTGTATGAAGGATTTGAAGTGACCAACTTGGTCTCGTGTGCTGTTACAGGTATGAAGGCTGATATCACTT]




>consensus_446#1
TAACGTTCCGTGTACTTGAATCGTTTGCCCTTTCGGTGCGAGGTGATAAAAGGACGTGGG
AAGGGTTAGTCTTGGAGATAAGAGAGCTATTAAGAGGTGTATGAAGGATTTGAAGTGACC
AACTTGGTCTCGTGTGCTGTTACAGGTATGAAGGCTGATATCACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_446#0      GAGATCATGACACGCGG-GCGCACGGATTACCGTCTGTTCCGGTA-AAGCCCTTTAAAGA 58
consensus_446#1      -------TAACGTTCCGTGTACTTGAATCGTTTGCCCTTTCGGTGCGAGGTGATAAAAGG 53
                            * **   * * *  *  * **      *  ** ****   **    * **** 

consensus_446#0      ACG-----GAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCA 113
consensus_446#1      ACGTGGGAAGGGTTAGTCTTGGAGATAAGAGAGCTATTAAGAGGTGTATGAAGGATTTGA 113
                     ***       * * *  * *  * * *      * *  * *  ***  ***  **  * *

consensus_446#0      AACAGTTGTCCCTCTGGCTCCGCGGTCACGCTCTCAAGTCGGTAAGACCAATATTAATCC 173
consensus_446#1      AGTGACCAACT---TGGTCTCGTG--TGCTGTTACAGGTATG-AAGGCTGATATCACTT- 166
                     *        *    ***   ** *    *  *  ** **  * *** *  **** * *  

consensus_446#0      AAATCTCTTCTCAGGTCTCTCAAGAAATACCCTTTGACGGTTTGGGCAGCCGGAAAGTGA 233
consensus_446#1      ------------------------------------------------------------
                                                                                 

consensus_446#0      TATCAGCCCTCATACCCGTAACAACACACGAGACCAAGTTGGTCACATTCAAATCCTTCC 293
consensus_446#1      ------------------------------------------------------------
                                                                                 

consensus_446#0      TACACCTAATAACTC 308
consensus_446#1      ---------------