cluster # 4465

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Schistosoma mansoni
cluster # 4465 cluster # 4465 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4465#0 length = 596 sequences # 2

consensus_4465#1 length = 457 sequences # 1

consensusID : consensus_4465#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 596
fasta sequence

                              [CCAAAGGTTGCGAAGGTAAAGTCACCAAATAAGGCTCAGATCCTCTCCAGTGACAAATATTACATTCCCGTAAACAGCGTGTATGACTTGAGTATGGATAAGATTGGGGATTGACATTGACAATAATACTATTGAGAGAAGTGCACTGATCTGTTGCTACAGGATGACTAGACAGACGCCGTCTTGGATGAATAGAAACCCATTTTTTTCTATCACTGATTGAATCAACATGAATTTCCTACCTTTACTTTTTTAGAACCTTCATTTGGATGAATCTCCATCTGTGCTGCAGTATTCCTGGTAGTCAGTTTGTTAGACGAGGGTGGCGAATTTATCATAATAACTTCATCATTAATACATTTATCCAGATATTCGGTACTAGAAATAACCGCAGTATTTTGAATCGCATTCGAGTAGAAATGATTGGTAATAGAATGGATAGGATTACATATAGAAACAGTCTGGTTAGAATCACGTCCTTTAGAGCAATCAGGAGAATCAATAAGTGAAGCTAAACAAGTTAGGCGTCTCCAGTCTGCTTGATAAACTGCGGCTTGATTAGTATGTTCAATCATATCACATAAGTCAGTAGCCCG]

[-] EMBL CD067391             [CCAAAGGTTGCGAAGGTAAAGTCACCAAATAAGGCTCAGATCCTCTCCAGTGACAAATATTACATTCCCGTAAACAGCGTGTATGACTTGAGTATGGATAAGATTGGGGATTGACATTGACAATAATACTATTGAGAGAAGTGCACTGATCTGTTGCTACAGGATGACTAGACAGACGCCGTCTTGGATGAATAGAAACCCATTTTTTTCTATCACTGATTGAATCAACATGAATTTCCTACCTTTACTTTTTTAGAACCTTCATTTGGATGAATCTCCATCTGTG                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD123129             [                   AGTCACCAAATAAGGCTCAGATCCTCTCCAGTGACAAATATTACATTCCCGTAAACAGCGTGTATGACCTGAGTATGGATAAGATTGGGGATTGACATTGACAATAATACTATTGAGAGAAGTGCACTGATCTGTTGCTACAGGATGACTAGACAGACGCCGTCTTGGATGCATAGAAACCCATTTTCTTCTATCACTGACTGAATCAACATGAATTTCCT CCTTTAC TTTTTAGAACCTTCATTTGGATGAATCTCCATCTGTGCTGCAGTATTCCTGGTAGTCAGTTTGTTAGACGAGGGTGGCGAATTTATCATAATAACTTCATCATTAATACATTTATCCAGATATTCGGTACTAGAAATAACCGCAGTATTTTGAATCGCATTCGAGTAGAAATGATTGGTAATAGAATGGATAGGATTACATATAGAAACAGTCTGGTTAGAATCACGTCCTTTAGAGCAATCAGGAGAATCAATAAGTGAAGCTAAACAAGTTAGGCGTCTCCAGTCTGCTTGATAAACTGCGGCTTGATTAGTATGTTCAATCATATCACATAAGTCAGTAGCCCG]




>consensus_4465#0
CCAAAGGTTGCGAAGGTAAAGTCACCAAATAAGGCTCAGATCCTCTCCAGTGACAAATAT
TACATTCCCGTAAACAGCGTGTATGACTTGAGTATGGATAAGATTGGGGATTGACATTGA
CAATAATACTATTGAGAGAAGTGCACTGATCTGTTGCTACAGGATGACTAGACAGACGCC
GTCTTGGATGAATAGAAACCCATTTTTTTCTATCACTGATTGAATCAACATGAATTTCCT
ACCTTTACTTTTTTAGAACCTTCATTTGGATGAATCTCCATCTGTGCTGCAGTATTCCTG
GTAGTCAGTTTGTTAGACGAGGGTGGCGAATTTATCATAATAACTTCATCATTAATACAT
TTATCCAGATATTCGGTACTAGAAATAACCGCAGTATTTTGAATCGCATTCGAGTAGAAA
TGATTGGTAATAGAATGGATAGGATTACATATAGAAACAGTCTGGTTAGAATCACGTCCT
TTAGAGCAATCAGGAGAATCAATAAGTGAAGCTAAACAAGTTAGGCGTCTCCAGTCTGCT
TGATAAACTGCGGCTTGATTAGTATGTTCAATCATATCACATAAGTCAGTAGCCCG

consensusID : consensus_4465#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [GATTGGGGATTGACATTGACAATAATACTATTGAGAGAAGTGCACTGATCTGTTGCTACAGGATGACTAGACAGACGCCGTCTTGGATGCATAGAAACCCATTTTCTTCTATCACTGACTGAATCAACATGAATTTCCTCCTTTACTTTTTTAGAACCTTCATTTGGATGAATCTCCATATTTCAAATTAGCTTTCAATATGTCATCCCATTTAGTCATCTCCTCGAAATGTCGAAATGATATACAACGTAACTTGTATGTACATACGAACATAATTACTCCATCATGCTTAGAGTCTACTCCAAGAATGTAGGCATGAACATCTTGACAACGACATAAACTTCCATCTTCGTTAAATACGAATAACTTTAGTGAGTTTATAAATGTTGCAGGTCTCTCAAGTGCACAGAGCTTCTTCTTCCACTTGCCACTAACTTTAACCGGTACAATATCTTCG]

[+] EMBL CD095291             [GATTGGGGATTGACATTGACAATAATACTATTGAGAGAAGTGCACTGATCTGTTGCTACAGGATGACTAGACAGACGCCGTCTTGGATGCATAGAAACCCATTTTCTTCTATCACTGACTGAATCAACATGAATTTCCTCCTTTACTTTTTTAGAACCTTCATTTGGATGAATCTCCATATTTCAAATTAGCTTTCAATATGTCATCCCATTTAGTCATCTCCTCGAAATGTCGAAATGATATACAACGTAACTTGTATGTACATACGAACATAATTACTCCATCATGCTTAGAGTCTACTCCAAGAATGTAGGCATGAACATCTTGACAACGACATAAACTTCCATCTTCGTTAAATACGAATAACTTTAGTGAGTTTATAAATGTTGCAGGTCTCTCAAGTGCACAGAGCTTCTTCTTCCACTTGCCACTAACTTTAACCGGTACAATATCTTCG]




>consensus_4465#1
GATTGGGGATTGACATTGACAATAATACTATTGAGAGAAGTGCACTGATCTGTTGCTACA
GGATGACTAGACAGACGCCGTCTTGGATGCATAGAAACCCATTTTCTTCTATCACTGACT
GAATCAACATGAATTTCCTCCTTTACTTTTTTAGAACCTTCATTTGGATGAATCTCCATA
TTTCAAATTAGCTTTCAATATGTCATCCCATTTAGTCATCTCCTCGAAATGTCGAAATGA
TATACAACGTAACTTGTATGTACATACGAACATAATTACTCCATCATGCTTAGAGTCTAC
TCCAAGAATGTAGGCATGAACATCTTGACAACGACATAAACTTCCATCTTCGTTAAATAC
GAATAACTTTAGTGAGTTTATAAATGTTGCAGGTCTCTCAAGTGCACAGAGCTTCTTCTT
CCACTTGCCACTAACTTTAACCGGTACAATATCTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4465#0      CCAAAGGTTGCGAAGGTAAAGTCACCAAATAAGGCTCAGATCCTCTCCAGTGACAAATAT 60
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      TACATTCCCGTAAACAGCGTGTATGACTTGAGTATGGATAAGATTGGGGATTGACATTGA 120
consensus_4465#1      -----------------------------------------GATTGGGGATTGACATTGA 19
                                                               *******************

consensus_4465#0      CAATAATACTATTGAGAGAAGTGCACTGATCTGTTGCTACAGGATGACTAGACAGACGCC 180
consensus_4465#1      CAATAATACTATTGAGAGAAGTGCACTGATCTGTTGCTACAGGATGACTAGACAGACGCC 79
                      ************************************************************

consensus_4465#0      GTCTTGGATGAATAGAAACCCATTTTTTTCTATCACTGATTGAATCAACATGAATTTCCT 240
consensus_4465#1      GTCTTGGATGCATAGAAACCCATTTTCTTCTATCACTGACTGAATCAACATGAATTTCCT 139
                      ********** *************** ************ ********************

consensus_4465#0      ACCTTTACTTTTTTAGAACCTTCATTTGGATGAATCTCCATCTGTGCTGCAGTATTCCTG 300
consensus_4465#1      -CCTTTACTTTTTTAGAACCTTCATTTGGATGAATCTCCATAT----TTCAAA----TTA 190
                       **************************************** *    * **       * 

consensus_4465#0      GTAGTCAGTTTGTTAGACGAGGGTGGCGAATTTATCATAATAACTTCATCATTAATACAT 360
consensus_4465#1      GCTTTCAATATGTCATCCCATT-TAGTCATCTCCTCGAAATGTCGAAATGATATACAACG 249
                      *   *** * *** *  * *   * *  *  *  **  ***  *   ** **  * *   

consensus_4465#0      TTATCCAGATATTCGGTACTAGAAATAACCGCAGTATTTTGAATCGCATTCGAGTAGAAA 420
consensus_4465#1      TAACTTGTATGTACA-TACGA-ACATAATTACTCCATCATGCTTAGAGTCTACTCCAAGA 307
                      * *     ** * *  *** * * ****   *   **  **  * *  *        * *

consensus_4465#0      TGATTGGTAATAGAATGGATAGGATTACATATAGAAACAGTCTGGTTAGAATCACGTC-C 479
consensus_4465#1      ATGTAGGCATGAACATCTTGACAACGACATAAACTTCCATCTTCGTTAAATACGAATAAC 367
                         * ** *  *  **    *  *  ***** *    **   * **** *  *   *  *

consensus_4465#0      TTTAGAGCAATCAGGAGAATCAATAAGTGAAGCTAAACAAGTTAGGCGTCTCCAGTCTGC 539
consensus_4465#1      TTTAGTGAGTTTATAAATGTTG-CAGGTCTC-TCAAGTGCACAGAGCTTCTTCT-TCCAC 424
                      ***** *   * *  *   *    * **      **         ** *** *  **  *

consensus_4465#0      TTGATA--AACTGCGGCTTGATTAGTATGTTCAATCATATCACATAAGTCAGTAGCCCG 596
consensus_4465#1      TTGCCACTAACTTTAACCGGTACAATATCTTCG-------------------------- 457
                      ***  *  ****    *  *   * *** ***