cluster # 4466

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Schistosoma mansoni
cluster # 4466 cluster # 4466 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4466#0 length = 537 sequences # 2

consensus_4466#1 length = 379 sequences # 1

consensusID : consensus_4466#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 537
fasta sequence

                              [GATTAGTAGCAGTGCAATGTTGAGAAGAAATATCAAATGACAAATCTTTAATATCCATAACATTTGATAATTCCGATATGAAGCGTATGACTTTATTTGGTGACCAAAATAGTGGATAGTAAGTGATCTCTTCAGCTGTTGGTCGATCTTTAGGATCAGATGAAAGCATTGTTTGTATAAGGTAACAGGCTAAATAGCTTTCATGAACATTGATTGGATTCTCTGTCAAAATGTCCAAATTATGTATACGACGTTCAGCTATTGCCAACTGTCGATCATGTTGACGGCTTACAGTGGTACATCTGAATGATTTAAGTTCATTTACGGAGTCAGAGTTGTTGCCCACACTACCACCACCACCAGTAGTAAAAGATGACGAGGATGACACTGACGAACATATACTTGTTGATTGGGTATTTTTTTTCGATTTGAAATTTATTCAATTCTTTACTACAGCAATCATATGGATGTTTACCATAAGTTAAAACATAATAAGCCAAGAGACCACAAGCGAATATATCAATTGCACCAGTCACT]

[+] EMBL CD194914             [GATTAGTAGCAGTGCAATGTTGAGAAGAAATATCAAATGACAAATCTTTAATATCCATAACATTTGATAATTCCGATATGAAGCGTATGACTTTATTTGGTGACCAAAATAGTGGATAGTAAGTGATCTCTTCAGCTGTTGGTCGATCTTTAGGATCAGATGAAAGCATTGTTTGTATAAGGTAACAGGCTAAATAGCTTTCATGAACATTGATTGGATTCTCTGTCAAAATGTCCAAATTATGTATACGACGTTCAGCTATTGCCAACTGTCGATCATGTTGACGGCTTACAGTGGTACATCTGAATGATTTAAGTTCATTTACGGAGTCAGAGTTGTTGCCCACACTACCACCACCACCAGTAGTAAAAGATGACGAGGATGACACTGACGAACATATACTTGTTGATTGGGTATTTTTTTTCGATTTGAAATTTATTCAATTCTTTACTACAGCAATCATATGGATGTTTACCATAAGTTAAAACATAATAAGCCAAGAGACCACAAGCGAATATATCAATTGCACCAGTCACT]
[-] EMBL CD194524             [                        AAGAAATATCAAATGACAAATCTTTAATATCCATAACATTTGATAATTCCGATATGAAGCGTATGACTTTATTTGGTGACCAAAATAGTGGATAGTAAGTGATCTCTTCAGCTGTTGGTCGATCTTTAGGATCAGATGAAAGCATTGTTTGTATAAGGTAACGGGCTAAATAGCTTTCATGAACATTGATTGGATTCTCTGTCAAAATGTCCAAATTAGGTAGACGACGTTCAGCTATTGCCAACTGTCGTTCATGTTGACGGCTTAAAGTGGTACATCTGAATGATTTAAGTTCATTTACGGAGTCAGAGTTGTTGCCCACACTACCACCACCACCAGTAGTAAAAGATGACGAGGATGACACTG                                                                                                                                                   ]




>consensus_4466#0
GATTAGTAGCAGTGCAATGTTGAGAAGAAATATCAAATGACAAATCTTTAATATCCATAA
CATTTGATAATTCCGATATGAAGCGTATGACTTTATTTGGTGACCAAAATAGTGGATAGT
AAGTGATCTCTTCAGCTGTTGGTCGATCTTTAGGATCAGATGAAAGCATTGTTTGTATAA
GGTAACAGGCTAAATAGCTTTCATGAACATTGATTGGATTCTCTGTCAAAATGTCCAAAT
TATGTATACGACGTTCAGCTATTGCCAACTGTCGATCATGTTGACGGCTTACAGTGGTAC
ATCTGAATGATTTAAGTTCATTTACGGAGTCAGAGTTGTTGCCCACACTACCACCACCAC
CAGTAGTAAAAGATGACGAGGATGACACTGACGAACATATACTTGTTGATTGGGTATTTT
TTTTCGATTTGAAATTTATTCAATTCTTTACTACAGCAATCATATGGATGTTTACCATAA
GTTAAAACATAATAAGCCAAGAGACCACAAGCGAATATATCAATTGCACCAGTCACT

consensusID : consensus_4466#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [AATAAGGAACTTATTCCAATTATCAATCCAAATACCGTAGATATGCATTTTAACAATAAAAGTGATACATTAGATGTATCCTCGGTGACAAGTATTCAAACTGATTCATCATCTATCAGTAGACCAGATGATTCATTGGAGTCTACTAACCGACGAAGGCGTGATGCTTTCGGGAGAGTTGTTGCCCACACTACCACCACCACCAGTAGTAAAAGATGACGAGGATGACACTGACGAACATATACTTGTTGATTGGGTATTTTTTTCGATTTGAAATTTATTCAATTCTTTACTACAGCAATCATATGGATGTTTACCATAAGTTAAAACATAATAAGCCAAGAGACCACAAGCGAATATATCAATTGCACAAGTCACT]

[+] EMBL CD195248             [AATAAGGAACTTATTCCAATTATCAATCCAAATACCGTAGATATGCATTTTAACAATAAAAGTGATACATTAGATGTATCCTCGGTGACAAGTATTCAAACTGATTCATCATCTATCAGTAGACCAGATGATTCATTGGAGTCTACTAACCGACGAAGGCGTGATGCTTTCGGGAGAGTTGTTGCCCACACTACCACCACCACCAGTAGTAAAAGATGACGAGGATGACACTGACGAACATATACTTGTTGATTGGGTATTTTTTTCGATTTGAAATTTATTCAATTCTTTACTACAGCAATCATATGGATGTTTACCATAAGTTAAAACATAATAAGCCAAGAGACCACAAGCGAATATATCAATTGCACAAGTCACT]




>consensus_4466#1
AATAAGGAACTTATTCCAATTATCAATCCAAATACCGTAGATATGCATTTTAACAATAAA
AGTGATACATTAGATGTATCCTCGGTGACAAGTATTCAAACTGATTCATCATCTATCAGT
AGACCAGATGATTCATTGGAGTCTACTAACCGACGAAGGCGTGATGCTTTCGGGAGAGTT
GTTGCCCACACTACCACCACCACCAGTAGTAAAAGATGACGAGGATGACACTGACGAACA
TATACTTGTTGATTGGGTATTTTTTTCGATTTGAAATTTATTCAATTCTTTACTACAGCA
ATCATATGGATGTTTACCATAAGTTAAAACATAATAAGCCAAGAGACCACAAGCGAATAT
ATCAATTGCACAAGTCACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4466#0      GATTAGTAGCAGTGCAATGTTGAGAAGAAATATCAAATGACAAATCTTTAATATCCATAA 60
consensus_4466#1      ------------------------------------------------------------
                                                                                  

consensus_4466#0      CATTTGATAATTCCGATATGAAGCGTATGACTTTATTTGGTGACCAAAATAGTGGATAGT 120
consensus_4466#1      ------------------------------------------------------------
                                                                                  

consensus_4466#0      AAGTGATCTCTTCAGCTGTTGGTCGATCTTTAGGATCAGATGAAAGCATTGTTTGTATAA 180
consensus_4466#1      -------------AATAAGGAACTTATTCCAATTATCA-ATCCAAATACCGTAGATATGC 46
                                   *           **    *  **** **  **  *  **   ***  

consensus_4466#0      GGTAACAGGCTAAATAGCTTTCATGAACATTGATTGGATTCTCTGTCA-AAATGTCCAAA 239
consensus_4466#1      ATTTTAACAATAAAAG----TGAT--ACATTAGATGTATCCTCGGTGACAAGTATTCAAA 100
                        *   *   ****      * **  *****   ** ** *** ** * ** * * ****

consensus_4466#0      TTATGTATACGACGTTCAGCTATTGCCAACTGTCGATCATGTTGACGGCTTACAGTGGTA 299
consensus_4466#1      CTG----------ATTCATCATCTATCA---GTAGACCA----GATGATTCATTGGAGTC 143
                       *            **** *   *  **   ** ** **    ** *  * *  *  ** 

consensus_4466#0      CATCTGAATGATTTAAGTTCATTTACGGAGTCAGAGTTGTTGCCCACACTACCACCACCA 359
consensus_4466#1      TA-CTAACCGACGAAGGCGTGATGCTTTCGGGAGAGTTGTTGCCCACACTACCACCACCA 202
                       * ** *  **   * *     *      *  ****************************

consensus_4466#0      CCAGTAGTAAAAGATGACGAGGATGACACTGACGAACATATACTTGTTGATTGGGTATTT 419
consensus_4466#1      CCAGTAGTAAAAGATGACGAGGATGACACTGACGAACATATACTTGTTGATTGGGTATTT 262
                      ************************************************************

consensus_4466#0      TTTTTCGATTTGAAATTTATTCAATTCTTTACTACAGCAATCATATGGATGTTTACCATA 479
consensus_4466#1      TTTT-CGATTTGAAATTTATTCAATTCTTTACTACAGCAATCATATGGATGTTTACCATA 321
                      **** *******************************************************

consensus_4466#0      AGTTAAAACATAATAAGCCAAGAGACCACAAGCGAATATATCAATTGCACCAGTCACT 537
consensus_4466#1      AGTTAAAACATAATAAGCCAAGAGACCACAAGCGAATATATCAATTGCACAAGTCACT 379
                      ************************************************** *******