These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 725 fasta sequence [CGAGCCAANATTCGGCACGAGGGTGGCTGGGGAGTATATTGATGTGCAATTCGCAACATTCTTGGGAATTTCGACAATGGCTGCTGCCGGTCTAGGGAATCTTGTTTCTGATCTTTTTGGCATAGGGCTTGTCGGCTACGTTGAAAAGTTCATGGAAAAAATTGGTATTTCCGTTCCCCCATTGTCTGCATCCCAACTAGCCAGCAGTTCAGTTCGTTGGTCTATAGCAATAGGACGGATCGTTGGCATTACTATTGGTTGTCTTCTAGGTTTATTGCCTCTTGTTTTGTTCAGTTGGTGAAAGCTAAGAAAATTAACCGAGGGATCAGTCCAACTTTTTGGGTTCTTTACCCCTACAATAGCAATGTTTTTAATTAACTGGATGTATCTTGATTTCTTCATTAGCATAAATCTACAGATCTTTATAAGTCGTGACAGTAAATTTGTAACTCTAGTGCAAACGCATTGCAAAACTATTTTCTTATTGACCAGCTATTTAAAACAGCATCACAGCTCTGCAGAACAATTTTTCGTCTCAAGATCAACATCATACCCAACATCTGATTTCGTATAATTTTTCGTTTCATTATTTGGATCGATTTTTAACTTACCTAATCACATTACAAGTATGTGGATAATATTTTCCAACTGCTGAATTGTTTAAAATAAGCCACATGTTATAAATGCCTTTTG-AACACTCAAGCGCC-ATCTCACTACACCGTATG] [+] EMBL CD080222 [CGAGCCAANATTCGGCACGAGGGTGGCTGGGGAGTATATTGATGTGCAATTCGCAACATTCTTGGGAATTTCGACAATGGCTGCTGCCGGTCTAGGGAATCTTGTTTCTGATCTTTTTGGCATAGGGCTTGTCGGCTACGTTGAAAAGTTCATGGAAAAAATTGGTATTTCCGTTCCCCCATTGTCTGCATCCCAACTAGCCAGCAGTTCAGTTCGTTGGTCTATAGCAATAGGACGGATCGTTGGCATTACTATTGGTTGTCTTCTAGGTTTATTGCCTCTTGTTTTGTTCAGTTGGTGAAAGCTAAGAAAATTAACCGAGGGATCAGTCCAACTTTTTGGGTTCTTTACCCCTACAATAGCAATGTTTTTAATTAACTGGATGTATCTTGATTTCTTCATTAGCATAAATCTACAGATCTTTATAAGTCGTGACAGTAAATTTGTAACTCTAGTGCAAACGCATTGCAAAACTATTTTCTTATTGACCAGCTATTTAAAACAGCATCACAGCTCTGCAGAACAATTTTTCGTCTCAAGATCAACATCATACCCAACATCTGATTTCGTATAATTTTTCGTTTCATTATTTGGATCGATTTTTAACTTACCTAATCACATTACAAGTATGTGGATAATATTTTCCAACTGCTGAATTGTTTAAAATAAGCCACATGTTATAAATGCCTTTTG AACACTCAAGCGCC ATCTCACTACACCGTATG] [+] EMBL SMAA69207 [ CAAGATCAACATCATACCCAACATCTGATTTCGTATAATTTTTCGTTTCATTATTTGGATCGATTTTTAACTTACCTAATCACATTACAAGTATGTGGATAATATTTTCCAACTGCTGAATTGTTTAAAATAAGCCACATGTTATAAATGCCTTTTGAAACACTCAAGCGCCAATCT ] consensusID : consensus_4469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [CGTTGAAAAGTTCATGGAAAAAATTGGTATTTCCGTTCCCCCATTGTCTGCGTTGGTCTATAGCAATAGGACGGATCGTTGGCATTACTATTGGTTGTCTTCTAGGTTTATTGCCTCTTGTTTTGTTCAGTTGGTGAAAGCTAAGAAAATTAACCGAGGGATCAGTCCAACTTTTTGGGTTTAATTAACTGGATGTATCTTGATTTCTTCATTAGCATAAATCTACAGATCTTTATAAGTCGTGACAGTAAATTTGTAACTCTAGTGCAAACGCATTGCAAAACTATTTTCTTATTGACCAGCTATTTAATTTTCGTCTCAAGATCAACATCATACCCAACATCTGATTTCGTATAATTTTTCGTTTCATTATTTGGATCGATTTTTAACTTACCTAATCACATTACAAGTATGTGGATAATATTTTCCAACTGCTGAATTGTTTAAAATACTCAAGCGCCAATCTCAACTACACCGTATGGTAAATGTGGTTTTCTAAATATATTANGATTACATAATGAACGTCCTAATAATCCTACATTTTTAGTTCATAATTTATTATTTTTAATTTCTATGTGAAATACCTAGTTNTGTCAAACATGTATTTTTATTAAACTCCAGCACTAAGAAATGTGTCGTTTAGTNNNNNNN] [+] EMBL CD080967 [CGTTGAAAAGTTCATGGAAAAAATTGGTATTTCCGTTCCCCCATTGTCTGCGTTGGTCTATAGCAATAGGACGGATCGTTGGCATTACTATTGGTTGTCTTCTAGGTTTATTGCCTCTTGTTTTGTTCAGTTGGTGAAAGCTAAGAAAATTAACCGAGGGATCAGTCCAACTTTTTGGGTTTAATTAACTGGATGTATCTTGATTTCTTCATTAGCATAAATCTACAGATCTTTATAAGTCGTGACAGTAAATTTGTAACTCTAGTGCAAACGCATTGCAAAACTATTTTCTTATTGACCAGCTATTTAATTTTCGTCTCAAGATCAACATCATACCCAACATCTGATTTCGTATAATTTTTCGTTTCATTATTTGGATCGATTTTTAACTTACCTAATCACATTACAAGTATGTGGATAATATTTTCCAACTGCTGAATTGTTTAAAATACTCAAGCGCCAATCTCAACTACACCGTATGGTAAATGTGGTTTTCTAAATATATTANGATTACATAATGAACGTCCTAATAATCCTACATTTTTAGTTCATAATTTATTATTTTTAATTTCTATGTGAAATACCTAGTTNTGTCAAACATGTATTTTTATTAAACTCCAGCACTAAGAAATGTGTCGTTTAGTNNNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4469#0 CGAGCCAANATTCGGCACGAGGGTGGCTGGGGAGTATATTGATGTGCAATTCGCAACATT 60 consensus_4469#1 ------------------------------------------------------------ consensus_4469#0 CTTGGGAATTTCGACAATGGCTGCTGCCGGTCTAGGGAATCTTGTTTCTGATCTTTTTGG 120 consensus_4469#1 ------------------------------------------------------------ consensus_4469#0 CATAGGGCTTGTCGGCTACGTTGAAAAGTTCATGGAAAAAATTGGTATTTCCGTTCCCCC 180 consensus_4469#1 ------------------CGTTGAAAAGTTCATGGAAAAAATTGGTATTTCCGTTCCCCC 42 ****************************************** consensus_4469#0 ATTGTCTGCATCCCAACTAGCCAGCAGTTCAGTTCGTTGGTCTATAGCAATAGGACGGAT 240 consensus_4469#1 ATTGTCTGC--------------------------GTTGGTCTATAGCAATAGGACGGAT 76 ********* ************************* consensus_4469#0 CGTTGGCATTACTATTGGTTGTCTTCTAGGTTTATTGCCTCTTGTTTTGTTCAGTTGGTG 300 consensus_4469#1 CGTTGGCATTACTATTGGTTGTCTTCTAGGTTTATTGCCTCTTGTTTTGTTCAGTTGGTG 136 ************************************************************ consensus_4469#0 AAAGCTAAGAAAATTAACCGAGGGATCAGTCCAACTTTTTGGGTTCTTTACCCCTACAAT 360 consensus_4469#1 AAAGCTAAGAAAATTAACCGAGGGATCAGTCCAACTTTTTGGGTT--------------- 181 ********************************************* consensus_4469#0 AGCAATGTTTTTAATTAACTGGATGTATCTTGATTTCTTCATTAGCATAAATCTACAGAT 420 consensus_4469#1 -----------TAATTAACTGGATGTATCTTGATTTCTTCATTAGCATAAATCTACAGAT 230 ************************************************* consensus_4469#0 CTTTATAAGTCGTGACAGTAAATTTGTAACTCTAGTGCAAACGCATTGCAAAACTATTTT 480 consensus_4469#1 CTTTATAAGTCGTGACAGTAAATTTGTAACTCTAGTGCAAACGCATTGCAAAACTATTTT 290 ************************************************************ consensus_4469#0 CTTATTGACCAGCTATTTAAAACAGCATCACAGCTCTGCAGAACAATTTTTCGTCTCAAG 540 consensus_4469#1 CTTATTGACCAGCTATTTAA---------------------------TTTTCGTCTCAAG 323 ******************** ************* consensus_4469#0 ATCAACATCATACCCAACATCTGATTTCGTATAATTTTTCGTTTCATTATTTGGATCGAT 600 consensus_4469#1 ATCAACATCATACCCAACATCTGATTTCGTATAATTTTTCGTTTCATTATTTGGATCGAT 383 ************************************************************ consensus_4469#0 TTTTAACTTACCTAATCACATTACAAGTATGTGGATAATATTTTCCAACTGCTGAATTGT 660 consensus_4469#1 TTTTAACTTACCTAATCACATTACAAGTATGTGGATAATATTTTCCAACTGCTGAATTGT 443 ************************************************************ consensus_4469#0 TTAAAATA---AGCCACATGTTATAAATGCCTTTTGAACACTCAAGCGCCATCTCACTAC 717 consensus_4469#1 TTAAAATACTCAAGCGCCAATCTCAACTACACCGTATGGTAAATGTGGTTTTCTAAATAT 503 ******** * * * * ** * * * * *** * ** consensus_4469#0 ACCGTATG---------------------------------------------------- 725 consensus_4469#1 ATTANGATTACATAATGAACGTCCTAATAATCCTACATTTTTAGTTCATAATTTATTATT 563 * consensus_4469#0 ------------------------------------------------------------ consensus_4469#1 TTTAATTTCTATGTGAAATACCTAGTTNTGTCAAACATGTATTTTTATTAAACTCCAGCA 623 consensus_4469#0 ---------------------------- consensus_4469#1 CTAAGAAATGTGTCGTTTAGTNNNNNNN 651 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||