These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [CGTGATTAAAGTTCGTAAGCAGTTTGTTTCTTGACTCCACACCATATTGTAATAAAATGTCACGCTTCCAACCTTACCTAACTGAAGCTCAAGAGAATGACCTACGCCGAATTGCTCAAGCTATTTGTGCTCCTGGCAAAGGGATTCTAGCAGCTGACGAAAGCACAGGTATTTACGCCCTAATTTTCATTTAGTTTTGTTTCAAAAGCCACAATGGGCAAAAGACTTCAACAGATCGGCGTTGAAAATAACGAAGAAAATCGTCGTCTGTACCGCCAGCTACTTTTTAGTGCTGATCACAAGCTGGCCGAAAATATCTCTGGAGTAATATTATTCGAAGAGACACTTCATCAAAAGTCAGACGATGGAAAGACTCTTCCAACTCTACTAGCTGAACG] [+] EMBL CD189387 [CGTGATTAAAGTTCGTAAGCAGTTTGTTTCTTGACTCCACACCATATTGTAATAAAATGTCACGCTTCCAACCTTACCTAACTGAAGCTCAAGAGAATGACCTACGCCGAATTGCTCAAGCTATTTGTGCTCCTGGCAAAGGGATTCTAGCAGCTGACGAAAGCACAGGTATTTACGCCCTAATTTTCATTTAGTTTTGTTTCAAAAGCCACAATGGGCAAAAGACTTCAACAGATCGGCGTTGAAAATAACGAAGAAAATCGTCGTCTGTACCGCCAGCTACTTTTTAGTGCTGATCACAAGCTGGCCGAAAATATCTCTGGAGTAATATTATTCGAAGAGACACTTCATCAAAAGTCAGACGATGGAAAGACTCTTCCAACTCTACTAGCTGAACG] consensusID : consensus_4470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [CGGGCTGGGGGCTGGTTTCTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGTTACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCATAACTGGCACGGACCTGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGCCCGGCCCGGNCNTTTNCTGC] [+] EMBL CD087625 [CGGGCTGGGGGCTGGTTTCTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGTTACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCATAACTGGCACGGACCTGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGCCCGGCCCGGNCNTTTNCTGC] consensusID : consensus_4470#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [CTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGAAACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCATAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGCCCGGTCTGGCCTCACACTT] [+] EMBL CD071558 [CTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGAAACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCATAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGCCCGGTCTGGCCTCACACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4470#1 CGGGCTGGGGGCTGGTTTCTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGTT 60 consensus_4470#2 ------------------CTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGAA 42 consensus_4470#0 CGTGATTAAAGTTCGTAAGCAGTTTGTTTCTTG-ACTCCACACCATATTGTAATAAAATG 59 ** ** ** ** * * **** * * consensus_4470#1 ACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCG---TGC---A 114 consensus_4470#2 ACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCG---TGC---A 96 consensus_4470#0 TCACGCTTCCAACCTTACCTAACTGAAGCTCAAGAGAATGACCTACGCCGAATTGCTCAA 119 * * ** *** * * * * * ** *** * consensus_4470#1 GCTAGCAACGC-----GCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTT---CC 166 consensus_4470#2 GCTAGCAACGC-----GCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTT---CC 148 consensus_4470#0 GCTATTTGTGCTCCTGGCAAAGGGATTCTAGCAGCTGACGAAAGCACAGGTATTTACGCC 179 **** ** ** * * ** * * ** **** *** ** ** consensus_4470#1 ATGGTCT--GGCGCGCGACGGCT---AACTCATAACTGGCACG-GACCTGGGGAATCCGA 220 consensus_4470#2 ATGGTCT--GGCGCGCGACGGCT---AACTCATAACTGGCACG-GACCAGGGGAATCCGA 202 consensus_4470#0 CTAATTTTCATTTAGTTTTGTTTCAAAAGCCACAATGGGCAAAAGACTTCAACAGATCGG 239 * * * * * * ** ** ** **** *** * ** consensus_4470#1 CTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATG-TGATT 279 consensus_4470#2 CTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATG-TGATT 261 consensus_4470#0 CGTTGAAAATAACGAAGAAAATCGTCGTCTGTACCG-CCAGCTACTTTTTAGTGCTGATC 298 * * ** *** * * ** * * * ** * * * * ** **** consensus_4470#1 TCTGCCCAGCCCGGCCCGGNCNTTTNCTGC------------------------------ 309 consensus_4470#2 TCTGCCCAGCCCGGTCTGGCCTCACACTT------------------------------- 290 consensus_4470#0 ACAAGCTGGCCGAAAATATCTCTGGAGTAATATTATTCGAAGAGACACTTCATCAAAAGT 358 * * *** * consensus_4470#1 ---------------------------------------- consensus_4470#2 ---------------------------------------- consensus_4470#0 CAGACGATGGAAAGACTCTTCCAACTCTACTAGCTGAACG 398 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||