cluster # 4478

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Schistosoma mansoni
cluster # 4478 cluster # 4478 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4478#0 length = 461 sequences # 1

consensus_4478#1 length = 441 sequences # 1
consensus_4478#2 length = 258 sequences # 1

consensusID : consensus_4478#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [AGGGAAATGATCCATATTTTATTGCATTGCGTTATGTCTGAAATGCCTTTCAATCGTTTCTATCCACGTGTATTAGGTGGTATTCTAAATTGTCATCGACGATTTTTGATGATGATCAAGTGTGGATTTTGGGATATTTTAAATAATAATAATTTAACAGTTGAAGCTAAATCTAATGCTGGTCGAGCATTAGGTTTACTTTGTCTTGTTTATAATTCTCCATTAACTGTATTAAAGGTGAGGTTTATTTATTTTTATTGTGTTCTACATACTCTTTGTTTTGTTTTTGTTTTACGACAAACAACACAATACATGGAGCTAACTCTTTTCAATGTTACAAAATTATGAGTCTTACTTACTTACATCAACATTCTCTATCCAACCCTGTCCTGGACAGTCCTTTTCAGTTCTTTCCAATTAACATTCATTNTTTTCATATCTGTTTCTATCTCCCGACATAA]

[+] EMBL CD145207             [AGGGAAATGATCCATATTTTATTGCATTGCGTTATGTCTGAAATGCCTTTCAATCGTTTCTATCCACGTGTATTAGGTGGTATTCTAAATTGTCATCGACGATTTTTGATGATGATCAAGTGTGGATTTTGGGATATTTTAAATAATAATAATTTAACAGTTGAAGCTAAATCTAATGCTGGTCGAGCATTAGGTTTACTTTGTCTTGTTTATAATTCTCCATTAACTGTATTAAAGGTGAGGTTTATTTATTTTTATTGTGTTCTACATACTCTTTGTTTTGTTTTTGTTTTACGACAAACAACACAATACATGGAGCTAACTCTTTTCAATGTTACAAAATTATGAGTCTTACTTACTTACATCAACATTCTCTATCCAACCCTGTCCTGGACAGTCCTTTTCAGTTCTTTCCAATTAACATTCATTNTTTTCATATCTGTTTCTATCTCCCGACATAA]




>consensus_4478#0
AGGGAAATGATCCATATTTTATTGCATTGCGTTATGTCTGAAATGCCTTTCAATCGTTTC
TATCCACGTGTATTAGGTGGTATTCTAAATTGTCATCGACGATTTTTGATGATGATCAAG
TGTGGATTTTGGGATATTTTAAATAATAATAATTTAACAGTTGAAGCTAAATCTAATGCT
GGTCGAGCATTAGGTTTACTTTGTCTTGTTTATAATTCTCCATTAACTGTATTAAAGGTG
AGGTTTATTTATTTTTATTGTGTTCTACATACTCTTTGTTTTGTTTTTGTTTTACGACAA
ACAACACAATACATGGAGCTAACTCTTTTCAATGTTACAAAATTATGAGTCTTACTTACT
TACATCAACATTCTCTATCCAACCCTGTCCTGGACAGTCCTTTTCAGTTCTTTCCAATTA
ACATTCATTNTTTTCATATCTGTTTCTATCTCCCGACATAA

consensusID : consensus_4478#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [CTTTTAACAAACGCGCATCTTGGATTCTACTGCTAGCCACTATCCATCTTTGCTTATATTTATTTGGATAGATTTTTTTGTTCTCTGAGTTGGATGGTTTGATTTTTTAGTTTTCAGCGTCCTTCTGATAACATCATCAGTACAAACGTCTACTTAAGAAACTAAGTGGAAATTTATTCTTATAACTATAAAATATGAAATTCAACCAACACCAAGATCAGAATTTTCAATACAAAAGTCAAGACAGTTCTACTGTGTGGGACGGAGACGTGGAGAACTACGAAAACCATCGTCTAGATAATGCAAGTGTTTATTAACAGTTGTCTAGGTAAGATACTTCGGATCCGTTTGCCAGACACTATCATCGACAAGTTACTGTGAGAGACAACAAACCAGATTCCATTTAATGGAGGAAGAAATCATGAAGAAGCACTGGAAGTG]

[+] EMBL CD086222             [CTTTTAACAAACGCGCATCTTGGATTCTACTGCTAGCCACTATCCATCTTTGCTTATATTTATTTGGATAGATTTTTTTGTTCTCTGAGTTGGATGGTTTGATTTTTTAGTTTTCAGCGTCCTTCTGATAACATCATCAGTACAAACGTCTACTTAAGAAACTAAGTGGAAATTTATTCTTATAACTATAAAATATGAAATTCAACCAACACCAAGATCAGAATTTTCAATACAAAAGTCAAGACAGTTCTACTGTGTGGGACGGAGACGTGGAGAACTACGAAAACCATCGTCTAGATAATGCAAGTGTTTATTAACAGTTGTCTAGGTAAGATACTTCGGATCCGTTTGCCAGACACTATCATCGACAAGTTACTGTGAGAGACAACAAACCAGATTCCATTTAATGGAGGAAGAAATCATGAAGAAGCACTGGAAGTG]




>consensus_4478#1
CTTTTAACAAACGCGCATCTTGGATTCTACTGCTAGCCACTATCCATCTTTGCTTATATT
TATTTGGATAGATTTTTTTGTTCTCTGAGTTGGATGGTTTGATTTTTTAGTTTTCAGCGT
CCTTCTGATAACATCATCAGTACAAACGTCTACTTAAGAAACTAAGTGGAAATTTATTCT
TATAACTATAAAATATGAAATTCAACCAACACCAAGATCAGAATTTTCAATACAAAAGTC
AAGACAGTTCTACTGTGTGGGACGGAGACGTGGAGAACTACGAAAACCATCGTCTAGATA
ATGCAAGTGTTTATTAACAGTTGTCTAGGTAAGATACTTCGGATCCGTTTGCCAGACACT
ATCATCGACAAGTTACTGTGAGAGACAACAAACCAGATTCCATTTAATGGAGGAAGAAAT
CATGAAGAAGCACTGGAAGTG

consensusID : consensus_4478#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence

                              [CGGACGAGGTCGTGGTCGTGAAGTCGCAACAGAAGAATGGAAGCCTGTTACCCAGTTGGGACGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCCGATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACTTAAAATCATGCCAGTTCAAAAGCAGACTTGGTGCTGGCCAGAGAACCCGCTTTAAAGCAATTGTTGCAATGGGAGACC]

[+] EMBL CD155453             [CGGACGAGGTCGTGGTCGTGAAGTCGCAACAGAAGAATGGAAGCCTGTTACCCAGTTGGGACGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCCGATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACTTAAAATCATGCCAGTTCAAAAGCAGACTTGGTGCTGGCCAGAGAACCCGCTTTAAAGCAATTGTTGCAATGGGAGACC]




>consensus_4478#2
CGGACGAGGTCGTGGTCGTGAAGTCGCAACAGAAGAATGGAAGCCTGTTACCCAGTTGGG
ACGTCTAGTAAACGAAAGGAAAATTACTACATTAGAAGAAATATACATGTTCAGTCTCCC
GATTAAGGAGTGTGAAATTATAGATACCATATTGGGTTCAAGTTTAAAAGATGAAGTACT
TAAAATCATGCCAGTTCAAAAGCAGACTTGGTGCTGGCCAGAGAACCCGCTTTAAAGCAA
TTGTTGCAATGGGAGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4478#0      AGGGAAATGATCCATATTTTATTGCATTGCGTTATGTCTGAAATGCCTTTCAATCGTTTC 60
consensus_4478#2      ------------------------------------------------------------
consensus_4478#1      CTTTTAACAAACGCGCATCTTGGATTCTACTGCTAGCCACTATCCATCTTTGCTTATATT 60
                                                                                  

consensus_4478#0      TATCCACGTGTATTAGGTGGTATTCTAAATTGTCATCGACGATTTTTGATGATGATCAAG 120
consensus_4478#2      ------------------------------------------------------------
consensus_4478#1      TATTTGGATAGATTTTTTTGTTCTCTGAGTTGGATGGTTTGATTTTTTAGTTTTCAGCGT 120
                                                                                  

consensus_4478#0      TGTGGATTTTGGGATATTTTAAATAATAATAATTTAACAGTTGAAGCTAAA-TCTAATGC 179
consensus_4478#2      -------------------------------------CGGACGAGGTCG-----TGGTCG 18
consensus_4478#1      CCTTCTGATAACATCATCAGTACAAACGTCTACTTAAGAAACTAAGTGGAAATTTATTCT 180
                                                                 * *        *  *  

consensus_4478#0      TGGTCGAGCATTAGGTTTACTTTGTCTTGTTTATAATTCTCCATTAACTGTATTAAAGGT 239
consensus_4478#2      TGAAGTCGCAACAGAAGAATGGAAGCCTGTTACCCAGTTGGGACGTCTAGTAAACGAAAG 78
consensus_4478#1      TATAACTATAAAATATGAAATTCAACCAACACCAAGATCAGAATTTTCAATACAAAAGTC 240
                      *        *  *     *      *           *    *       **    *   

consensus_4478#0      GAGGTTTATTTATTTTTATTGTGTTCTACATACTCTTTGTTTTGTTTTTGTTTTACGACA 299
consensus_4478#2      GAAAATTACT-ACATTAGAAGAAATATACATGTTCAGTCTCCCGATTAAGGAGTGTGAAA 137
consensus_4478#1      AAGACAGTTCTACTGTGTGGGACGGAGACGTGGAGAACTACGAAAACCATCGTCTAGATA 300
                       *         *   *    *      ** *                         ** *

consensus_4478#0      AACAACACAAT-ACATGGAGCTAACTCTTTTCAATGTTACAAAATTATGAGTCTTAC-TT 357
consensus_4478#2      TTATAGATACC-ATATTGGGTTCAAG--TTTAAAAGATGAAGTACTTAAAATCATGC-CA 193
consensus_4478#1      ATGCAAGTGTTTATTAACAGTTGTCTAGGTAAGATACTTCGGATCCGTTTGCCAGACACT 360
                          *       *      * *       *   *   *              *   *   

consensus_4478#0      ACTTACATCAACATTCTCTATCCAACCCTGTCCTGGACAGTCCTTTTCAGT--TCTTTCC 415
consensus_4478#2      GTTCAAA--AGCAGACTTGGTGCTGGCCAG----AGAACCCGCTTTAAAGCAATTGTTGC 247
consensus_4478#1      ATCATCGACAAGTTACTGTGAGAGACAACAAACCAGATTCCATTTAATGGAGGAAGAAAT 420
                               *     **                  **      **    *          

consensus_4478#0      AATTAACATTCATTNTTTTCATATCTGTTTCTATCTCCCGACATAA 461
consensus_4478#2      AATGGGAGACC----------------------------------- 258
consensus_4478#1      CATGAAGAAGCACTGGAAGTG------------------------- 441
                       **       *