cluster # 4483

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Schistosoma mansoni
cluster # 4483 cluster # 4483 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4483#0 length = 425 sequences # 2

consensus_4483#1 length = 232 sequences # 1

consensusID : consensus_4483#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 425
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTGACGTTATTACAAGAATATATTAGTTAAGGTACAACTACCGAAGTACAGAAGTGAAAGAATAACCACTGCCGCGTGGGCCAGTCCATGGCGTACGATTGGTTTGTGCGCGTTGACTATCCTTGACCTTGGCAGGGATCAATGATCTGTTCGATATTCAGTGACCCTACAATGTAAACATTCCCAGCTTATGAGTAAAATGATCATTCACTAGTTTAATTTAAATAATTTCCATCTTTATCAACGCAATATACGATACTAATTGTGGAATTGTGTTTCTGTTATAATTTGTGACCACATGGATGCCCTATTAATTAATGCATGACGTGATAAGACCGCCAATTAAAGAACAGTGAATTATCGGTCGGACAAATGACAACCGAAACACGTACGAACAGCCTAGAGGA]

[+] EMBL AI395750             [TTTTTTTTTTTTTTTTTTTTGACGTTATTACAAGAATATATTAGTTAAGGTACAACTACCGAAGTACAGAAGTGAAAGAATAACCACTGCCGCGTGGGCCAGTCCATGGCGTACGATTGGTTTGTGCGCGTTGACTATCCTTGACCTTGGCAGGGATCAATGATCTGTTCGATATTCAGTGACCCT                                                                                                                                                                                                                                               ]
[+] EMBL CD085401             [                                                                                                                                 GTTGACTATCCTTGACTTTGACAGGGATCAATGATCTGTTCGATATTCAGTGACCCTACAATGTAAACATTCCCAGCTTATGAGTAAAATGATCATTCACTAGTTTAATTTAAATAATTTCCATCTTTATCAACGCAATATACGATACTAATTGTGGAATTGTGTTTCTGTTATAATTTGTGACCACATGGATGCCCTATTAATTAATGCATGACGTGATAAGACCGCCAATTAAAGAACAGTGAATTATCGGTCGGACAAATGACAACCGAAACACGTACGAACAGCCTAGAGGA]




>consensus_4483#0
TTTTTTTTTTTTTTTTTTTTGACGTTATTACAAGAATATATTAGTTAAGGTACAACTACC
GAAGTACAGAAGTGAAAGAATAACCACTGCCGCGTGGGCCAGTCCATGGCGTACGATTGG
TTTGTGCGCGTTGACTATCCTTGACCTTGGCAGGGATCAATGATCTGTTCGATATTCAGT
GACCCTACAATGTAAACATTCCCAGCTTATGAGTAAAATGATCATTCACTAGTTTAATTT
AAATAATTTCCATCTTTATCAACGCAATATACGATACTAATTGTGGAATTGTGTTTCTGT
TATAATTTGTGACCACATGGATGCCCTATTAATTAATGCATGACGTGATAAGACCGCCAA
TTAAAGAACAGTGAATTATCGGTCGGACAAATGACAACCGAAACACGTACGAACAGCCTA
GAGGA

consensusID : consensus_4483#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence

                              [CTTAACAATGATACAATAGGAAATATACATATTACATTGTTCCGTAAATAGTCCTCAAAAGTTACCATTCACAATTCTCTTCGGGATACAACAATATCATACCTCACACAATGCTCTGTGTTTCACATTCTGTTGGAAAACACTATTTCTATAAGTACCATTTTACAAGCTTATCAGACAGTTACAAATTATGGACTGTGTGTAAGGCTTCGATGCAATGCTTTAATTGACT]

[+] EMBL CD193908             [CTTAACAATGATACAATAGGAAATATACATATTACATTGTTCCGTAAATAGTCCTCAAAAGTTACCATTCACAATTCTCTTCGGGATACAACAATATCATACCTCACACAATGCTCTGTGTTTCACATTCTGTTGGAAAACACTATTTCTATAAGTACCATTTTACAAGCTTATCAGACAGTTACAAATTATGGACTGTGTGTAAGGCTTCGATGCAATGCTTTAATTGACT]




>consensus_4483#1
CTTAACAATGATACAATAGGAAATATACATATTACATTGTTCCGTAAATAGTCCTCAAAA
GTTACCATTCACAATTCTCTTCGGGATACAACAATATCATACCTCACACAATGCTCTGTG
TTTCACATTCTGTTGGAAAACACTATTTCTATAAGTACCATTTTACAAGCTTATCAGACA
GTTACAAATTATGGACTGTGTGTAAGGCTTCGATGCAATGCTTTAATTGACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4483#0      TTTTTTTTTTTTTTTTTTTTGACGTTATTACAAGAATATATTAGTTAAGGTACAACTACC 60
consensus_4483#1      ------------------------------------------------------------
                                                                                  

consensus_4483#0      GAAGTACAGAAGTGAAAGAATAACCACTGCCGCGTGGGCCAGTCCATGGCGTACG-ATTG 119
consensus_4483#1      --------------------------CTTAACAATGATACAATAGGAAATATACATATTA 34
                                                **      **   ** *        ***  *** 

consensus_4483#0      GTTTGTGCGCGTTGACTATCCTTGACCTTGGCAGGGATCAATGATCTGTTCGATATTCAG 179
consensus_4483#1      CATTGTTC-CGTAAATAGTCCTCAAAAGTTACCATTCACAAT--TCTCTTCGGGATACAA 91
                        **** * ***  *   ****  *   *  *      ****  *** ****  ** ** 

consensus_4483#0      TGACCCTACAATGTAAACATTCCCAGCTTATGAGTAAAATGATCATTCACTAGTTTAATT 239
consensus_4483#1      CAATATCATACCTCACACAATGC---TCTGTGTTTCACATT-CTGTTGGAAAACACTATT 147
                        *    * *    * *** * *     * **  * * **     **    *     ***

consensus_4483#0      TAAATAATTTCCATCTTTATCAACGCAATATACGAT-ACTAATTGTGGAATTGTGTTTCT 298
consensus_4483#1      TCTATAAGTACCAT-TTTACAAGCTTATCAGACAGTTACAAATTATGGA-CTGTGTGTAA 205
                      *  **** * **** ****  * *  *  * **  * ** **** ****  ***** *  

consensus_4483#0      GTTATAATTTGTGACCACATGGATGCCCTATTAATTAATGCATGACGTGATAAGACCGCC 358
consensus_4483#1      GGCTTCGAT-GCAATGCTTTAATTGACT-------------------------------- 232
                      *   *   * *  *     *   ** *                                 

consensus_4483#0      AATTAAAGAACAGTGAATTATCGGTCGGACAAATGACAACCGAAACACGTACGAACAGCC 418
consensus_4483#1      ------------------------------------------------------------
                                                                                  

consensus_4483#0      TAGAGGA 425
consensus_4483#1      -------