These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 425 fasta sequence [TTTTTTTTTTTTTTTTTTTTGACGTTATTACAAGAATATATTAGTTAAGGTACAACTACCGAAGTACAGAAGTGAAAGAATAACCACTGCCGCGTGGGCCAGTCCATGGCGTACGATTGGTTTGTGCGCGTTGACTATCCTTGACCTTGGCAGGGATCAATGATCTGTTCGATATTCAGTGACCCTACAATGTAAACATTCCCAGCTTATGAGTAAAATGATCATTCACTAGTTTAATTTAAATAATTTCCATCTTTATCAACGCAATATACGATACTAATTGTGGAATTGTGTTTCTGTTATAATTTGTGACCACATGGATGCCCTATTAATTAATGCATGACGTGATAAGACCGCCAATTAAAGAACAGTGAATTATCGGTCGGACAAATGACAACCGAAACACGTACGAACAGCCTAGAGGA] [+] EMBL AI395750 [TTTTTTTTTTTTTTTTTTTTGACGTTATTACAAGAATATATTAGTTAAGGTACAACTACCGAAGTACAGAAGTGAAAGAATAACCACTGCCGCGTGGGCCAGTCCATGGCGTACGATTGGTTTGTGCGCGTTGACTATCCTTGACCTTGGCAGGGATCAATGATCTGTTCGATATTCAGTGACCCT ] [+] EMBL CD085401 [ GTTGACTATCCTTGACTTTGACAGGGATCAATGATCTGTTCGATATTCAGTGACCCTACAATGTAAACATTCCCAGCTTATGAGTAAAATGATCATTCACTAGTTTAATTTAAATAATTTCCATCTTTATCAACGCAATATACGATACTAATTGTGGAATTGTGTTTCTGTTATAATTTGTGACCACATGGATGCCCTATTAATTAATGCATGACGTGATAAGACCGCCAATTAAAGAACAGTGAATTATCGGTCGGACAAATGACAACCGAAACACGTACGAACAGCCTAGAGGA] consensusID : consensus_4483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [CTTAACAATGATACAATAGGAAATATACATATTACATTGTTCCGTAAATAGTCCTCAAAAGTTACCATTCACAATTCTCTTCGGGATACAACAATATCATACCTCACACAATGCTCTGTGTTTCACATTCTGTTGGAAAACACTATTTCTATAAGTACCATTTTACAAGCTTATCAGACAGTTACAAATTATGGACTGTGTGTAAGGCTTCGATGCAATGCTTTAATTGACT] [+] EMBL CD193908 [CTTAACAATGATACAATAGGAAATATACATATTACATTGTTCCGTAAATAGTCCTCAAAAGTTACCATTCACAATTCTCTTCGGGATACAACAATATCATACCTCACACAATGCTCTGTGTTTCACATTCTGTTGGAAAACACTATTTCTATAAGTACCATTTTACAAGCTTATCAGACAGTTACAAATTATGGACTGTGTGTAAGGCTTCGATGCAATGCTTTAATTGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4483#0 TTTTTTTTTTTTTTTTTTTTGACGTTATTACAAGAATATATTAGTTAAGGTACAACTACC 60 consensus_4483#1 ------------------------------------------------------------ consensus_4483#0 GAAGTACAGAAGTGAAAGAATAACCACTGCCGCGTGGGCCAGTCCATGGCGTACG-ATTG 119 consensus_4483#1 --------------------------CTTAACAATGATACAATAGGAAATATACATATTA 34 ** ** ** * *** *** consensus_4483#0 GTTTGTGCGCGTTGACTATCCTTGACCTTGGCAGGGATCAATGATCTGTTCGATATTCAG 179 consensus_4483#1 CATTGTTC-CGTAAATAGTCCTCAAAAGTTACCATTCACAAT--TCTCTTCGGGATACAA 91 **** * *** * **** * * * **** *** **** ** ** consensus_4483#0 TGACCCTACAATGTAAACATTCCCAGCTTATGAGTAAAATGATCATTCACTAGTTTAATT 239 consensus_4483#1 CAATATCATACCTCACACAATGC---TCTGTGTTTCACATT-CTGTTGGAAAACACTATT 147 * * * * *** * * * ** * * ** ** * *** consensus_4483#0 TAAATAATTTCCATCTTTATCAACGCAATATACGAT-ACTAATTGTGGAATTGTGTTTCT 298 consensus_4483#1 TCTATAAGTACCAT-TTTACAAGCTTATCAGACAGTTACAAATTATGGA-CTGTGTGTAA 205 * **** * **** **** * * * * ** * ** **** **** ***** * consensus_4483#0 GTTATAATTTGTGACCACATGGATGCCCTATTAATTAATGCATGACGTGATAAGACCGCC 358 consensus_4483#1 GGCTTCGAT-GCAATGCTTTAATTGACT-------------------------------- 232 * * * * * * ** * consensus_4483#0 AATTAAAGAACAGTGAATTATCGGTCGGACAAATGACAACCGAAACACGTACGAACAGCC 418 consensus_4483#1 ------------------------------------------------------------ consensus_4483#0 TAGAGGA 425 consensus_4483#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||