cluster # 4484

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Schistosoma mansoni
cluster # 4484 cluster # 4484 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4484#0 length = 527 sequences # 2

consensus_4484#1 length = 451 sequences # 1

consensusID : consensus_4484#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 527
fasta sequence

                              [ATATGGTTGTGTCAAAAGAATATTCTATAAATATTCACTTAAACGATACCAAAATAATAATAATTGTAAAATAAAAACATGAAAAACCAAATTTTCAAGAATTTGTGTTTTTGGTATTATTGAGTTCTTTGAACTAGATGTAGTAGTAAGTACTGATGATATTTACCAGAGCGAAAGCGGAACTTTTGTAATTATGCCATCTAGTACGGACAACTCAGCAACGTTAAAAGTCTCCACTTGAACTTCAAATATTTTCCATTATCCCATAATTTGATATGAGCATGCACCAATCGAATTACACATGACGGAGCAGCTTTGGAGGATGTGAAAACCTTTACATATCTGGGCAGCATCATCGATGAATACGGTGGATCAGATGCAGATGTGAGGGCGAAGATCGGCAAAGCAAGAGCAGCATATTCATAACTAAAGAACATCTGGGACTCAAAACAACTTTCAACCAACCCCAAGATCAGAATTTTCAATACAAATGTCAAGACAATTCTACTGTATGGGGCGGAGACGTG]

[+] EMBL CD185137             [ATATGGTTGTGTCAAAAGAATATTCTATAAATATTCACTTAAACGATACCAAAATAATAATAATTGTAAAATAAAAACATGAAAAACCAAATTTTCAAGAATTTGTGTTTTTGGTATTATTGAGTTCTTTGAACTAGATGTAGTAGTAAGTACTGATGATATTTACCAGAGCGAAAGCGGAACTTTTGTAATTATGCCATCTAGTACGGACAACTCAGCAACGTTAAAAGTCTCCACTTGAACTTCAAATATTTTCCATTATCCCATAATTTGATATGAGCATGCACCAATCGAATTACACATGACGGAGCAGCTTTGGAGGATGTGAAAACCTTTACATATCTGGGCAGCATCATCGATGAATACGGTGGATCAGATGCAGATGTGAGGGCGAAGATCGGCAAAGCAAGAGCAGCATATTCATAACTAAAGAACATCTGGGACTCAAAACAACTTTCAACCAACCCCAAGATCAGAATTTTCAATACAAATGTCAAGACAATTCTACTGTATGGGGCGGAGACGTG]
[+] EMBL CD185244             [ATATGGTTGTGTCAAAAGAATATTCTATAAATATTCACTTAAACGATACCAAAATAATAATAATTGTAAAATAAAAACATGAAAAACCAAATTTTCAAGAATTTGTGTTTTTGGTATTATTGAGTTCTTTGAACTAGATGTAGTAGTAAGTACTGATGATATTTACCAGAGCGAAAGCGGAACTTTTGTAATTATGCCATCTAGTACGGACAACTCAGCAACGTTAAAAGTCTCCACTTGAACTTCAAATATTTTCCATTATCCCATAATTTGATATGAGCATGCACCAATCGAATTACACATGACGGAGCAGCTTTGGAGGATGTGAAAACCTTTACATATCTGGGCAGCATCATCGATGAATACGGTGGATCAGATGCAGATGTGAGGGCGAAGATCGGCAAAGCAAGAGCAGCATATTCATAACTAAAGAACATCTGGGACTCAAAACAACTTTCAACCAACCCCAAGATCAGAATTTTCAATACAAATGTCAAGACA                          ]




>consensus_4484#0
ATATGGTTGTGTCAAAAGAATATTCTATAAATATTCACTTAAACGATACCAAAATAATAA
TAATTGTAAAATAAAAACATGAAAAACCAAATTTTCAAGAATTTGTGTTTTTGGTATTAT
TGAGTTCTTTGAACTAGATGTAGTAGTAAGTACTGATGATATTTACCAGAGCGAAAGCGG
AACTTTTGTAATTATGCCATCTAGTACGGACAACTCAGCAACGTTAAAAGTCTCCACTTG
AACTTCAAATATTTTCCATTATCCCATAATTTGATATGAGCATGCACCAATCGAATTACA
CATGACGGAGCAGCTTTGGAGGATGTGAAAACCTTTACATATCTGGGCAGCATCATCGAT
GAATACGGTGGATCAGATGCAGATGTGAGGGCGAAGATCGGCAAAGCAAGAGCAGCATAT
TCATAACTAAAGAACATCTGGGACTCAAAACAACTTTCAACCAACCCCAAGATCAGAATT
TTCAATACAAATGTCAAGACAATTCTACTGTATGGGGCGGAGACGTG

consensusID : consensus_4484#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [TTACTTTGGTGAGTACAATAATTTAAATATTCTTTAAACAGCTGAGCGGGTCAGCTCATTTGGTTGTGACTGGCATCGCCAATGCCTAAAGTGCAGCAGATGTAATAAAACCATGCTTCCTGGTTGCGGCTTAGAAGATCTCATATGAGGCTTGCCTTGTGACGCAGTTGGGTAATTTCCTCCATGTGTGTCCTATCCACTTCCAGCGCTTCTTCCTCCTCTGGAATCTGGTTTGTTCTCTCCCACAGTAAGTTGTTGCCAATTGTGTCTGGCCAACGGATCCGAAGTATTTTGCGTAGACAACTGTTAATAAACACTTGTATCTTCTGGATGATAACTTTCGCACTTCTCCAGGTTTCCACCTCATACAGTAGAACTGTCTAGACATTTGTATTGAAAATTCTGATCTTGGTGTTGGTTGAAAGTTGTTTTGAGTTCCAAATGTTCTTCA]

[+] EMBL CD170252             [TTACTTTGGTGAGTACAATAATTTAAATATTCTTTAAACAGCTGAGCGGGTCAGCTCATTTGGTTGTGACTGGCATCGCCAATGCCTAAAGTGCAGCAGATGTAATAAAACCATGCTTCCTGGTTGCGGCTTAGAAGATCTCATATGAGGCTTGCCTTGTGACGCAGTTGGGTAATTTCCTCCATGTGTGTCCTATCCACTTCCAGCGCTTCTTCCTCCTCTGGAATCTGGTTTGTTCTCTCCCACAGTAAGTTGTTGCCAATTGTGTCTGGCCAACGGATCCGAAGTATTTTGCGTAGACAACTGTTAATAAACACTTGTATCTTCTGGATGATAACTTTCGCACTTCTCCAGGTTTCCACCTCATACAGTAGAACTGTCTAGACATTTGTATTGAAAATTCTGATCTTGGTGTTGGTTGAAAGTTGTTTTGAGTTCCAAATGTTCTTCA]




>consensus_4484#1
TTACTTTGGTGAGTACAATAATTTAAATATTCTTTAAACAGCTGAGCGGGTCAGCTCATT
TGGTTGTGACTGGCATCGCCAATGCCTAAAGTGCAGCAGATGTAATAAAACCATGCTTCC
TGGTTGCGGCTTAGAAGATCTCATATGAGGCTTGCCTTGTGACGCAGTTGGGTAATTTCC
TCCATGTGTGTCCTATCCACTTCCAGCGCTTCTTCCTCCTCTGGAATCTGGTTTGTTCTC
TCCCACAGTAAGTTGTTGCCAATTGTGTCTGGCCAACGGATCCGAAGTATTTTGCGTAGA
CAACTGTTAATAAACACTTGTATCTTCTGGATGATAACTTTCGCACTTCTCCAGGTTTCC
ACCTCATACAGTAGAACTGTCTAGACATTTGTATTGAAAATTCTGATCTTGGTGTTGGTT
GAAAGTTGTTTTGAGTTCCAAATGTTCTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4484#0      ATATGGTTGTGTCAAAAGAATATTCTATAAATATTCACTTAAACGA-TACCAAAATAATA 59
consensus_4484#1      ----------------------------------TTACTTTGGTGAGTACAATAATTTAA 26
                                                        * ****    ** *** * ***   *

consensus_4484#0      ATAATTGTAAAATAAAAACATGAAAAACCAAATTTTCAAGAATTTGTGTTTTTGGTATTA 119
consensus_4484#1      ATATTCTTTAAACAGCTGAGCGGGTCAGCTCATTT------GGTTGTGAC--TGGCATCG 78
                      *** *  * *** *       *    * *  ****        *****    *** **  

consensus_4484#0      TTGAGTTCTTTGAACTAGATGTAGTAGTAAGTACTGATGATATTTACCAGAGCGAAAGCG 179
consensus_4484#1      CCAATGCCTAAAGTGCAGCAGATGTAATAA--AACCATGCTTCCTGGTTGCGGCTTAGAA 136
                         *   **       **  *  *** ***  *   *** *   *    * *    **  

consensus_4484#0      GAACTTTTGTAAT-TATGCCATCTAGTACGGACAACTCAGCAACGTTAAAAGTCTCCACT 238
consensus_4484#1      GATCTCATATGAGGCTTGCCTTGTGACGCAGTTGGGTAATTTCCTCCATGTGTGTCC-TA 195
                      ** **  * * *    **** * *    * *     * *    *   *   ** ***   

consensus_4484#0      TGAACTTCAAATATTTTCCATTATCCCATAATTTGATATGAGCATGCACCAATCGAATTA 298
consensus_4484#1      TCCACTTCCAGCGCTTCTTCCTCCTCTGGAATCTGGTTTGTTCTCTCCCACAGTAAGTTG 255
                      *  ***** *    **     *   *   *** ** * **  *   * *  *   * ** 

consensus_4484#0      CACATGACGGAGCAGCTTTGGAGGATGTGAAAACCTTTACATATCTGGGCAGCATCATCG 358
consensus_4484#1      TTGCCAATTGTGTCTGGCCAACGGATCCGAAGTATTTTGCGTAGACAACTGTTAATAAAC 315
                            *  * *          ****  ***    *** * **          *  *   

consensus_4484#0      A--TGAATACGGTGGATCAGA-----TGCAGATGTGAGGGCGAAGATCGGCAAAGCAAGA 411
consensus_4484#1      ACTTGTATCTTCTGGATGATAACTTTCGCACTTCTCCAGGTTTCCACCTCATACAGTAGA 375
                      *  ** **    ***** * *      ***  * *   **     * *    *    ***

consensus_4484#0      GCAGCATATTCATAACTAAAGAACATCTGGGACTCAAAACAACTTTCAACCAACCCCAAG 471
consensus_4484#1      ACTGTCTAGACATTTGTATTGAAAATTCTGATCTTGGTGTTGGTTGAAAGTTGTTTTGAG 435
                       * *  **  ***   **  *** **   *  **         **  **         **

consensus_4484#0      ATCAGAATTTTCAATACAAATGTCAAGACAATTCTACTGTATGGGGCGGAGACGTG 527
consensus_4484#1      TTCCAAATGTTCTTCA---------------------------------------- 451
                       **  *** ***   *