cluster # 4491

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Schistosoma mansoni
cluster # 4491 cluster # 4491 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4491#0 length = 593 sequences # 2

consensus_4491#1 length = 395 sequences # 1

consensusID : consensus_4491#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 593
fasta sequence

                              [TGCTCCCGNGCCGCCATGGCTGGCCGCGGGCAATTCGATTCATCCATCTCGAGATGGAAGGTGATGTTGATACTCCAGCTGGTAACGGTAAAGGTTTTGGAGATAATGAAATTGTCTGCAATGAATTAGTTTGATGGTTAAATATGCTATCATGATTATGTGATATTATAACCAAAGGATTATGTAATCGCAAATGAATCAAATCTGTGTAAACATCAGTAAAAACCAACCAGTATGTGTAATCCTCTCTTTGATATAGTAATCCCGACCCTATAGAAAGATTTGTAACATTATGATACATAGTGAACAAACTAACAGGATATCCTGGAGCCGATAATCCGGTCTGAATGTCGACAGCATGTACATAACCATCAGGTGTTGTGTAAACAGACCATGGTGAACAAGTTTGTAATTTTTGACATCCAGGAACAATTATCACTTGACCAGTTTGTTCTCCATACTCCAATGTAGTCATTGTAGTATTAGAAATAGCGGGGCAATATGTCCAATAAATTTGAGAATGATATTTTTTAATTGATACAAGAAGAACAAGACGTAAACAAGAATAAATATCCACTTGTAGACAACAAGTA]

[+] EMBL CD178554             [TGCTCCCGNGCCGCCATGGCTGGCCGCGGGCAATTCGATTCATCCATCTCGAGATGGAAGGTGATGTTGATACTCCAGCTGGTAACGGTAAAGGTTTTGGAGATAATGAAATTGTCTGCAATGAATTAGTTTGATGGTTAAATATGCTATCATGATTATGTGATATTATAACCAAAGGATTATGTAATCGCAAATGAATCAAATCTGTGTAAACATCAGTAAAAACCAACCAGTATGTGTAATCCTCTCTTTGATATAGTAATCCCGACCCTATAGAAAGATTTGTAACATTATGATACATAGTGAACAAACTAACAGGATATCCTGGAGCCGATAATCCGGTCTGAATGTCGACAGCATGTACATAACCATCAGGTGTTGTGTAAACAGACCATGGTGAACAAGTTTGTAATTTTTGACATCCAGGAACAATTATCACTTGACCAGTTTGTTCTCCATACTCCAATGTAGTCATTGTAGTATTAGAAATAGCGGGGCAATATGTCCAATAAATTTGAGAATGATATTTTTTAATTGATACAAGAAGAACAAGACGTAAACAAGAATAAATATCCACTTGTAGACAACAAGTA]
[-] EMBL CD178561             [                                                                       ACTCCAGCTGGTAACGGTAAAGGTTTTGGAGATAATGAAATTGTCTGCAATGAATTAGTTTGATGGTTAAATATGTTATCATGATTATGTGATATTATAACCAAAGGATTATGTAATCGCAAATGAATCAAATTTGTGTAAACATCAGTAAAAACCAACCAGTATGTGTAATCCTCTCTTTGATATAGTAATCCCGACCCTATAGAAAGATTTGTAACATTATGATACATAGTGAACAAACTAACAGGATATCCTGGAGCCGATAATCCGGTCTGAATGTCGACAGCATGTACATAACCATCAGGTGTTGTGTAAACAGACCATGGTGAACAAGTTTGTAATTTTTGACATCCAGGAACAATTATCACTTGACCAGTTTGTTCTCCATACTCCAATG                                                                                                                             ]




>consensus_4491#0
TGCTCCCGNGCCGCCATGGCTGGCCGCGGGCAATTCGATTCATCCATCTCGAGATGGAAG
GTGATGTTGATACTCCAGCTGGTAACGGTAAAGGTTTTGGAGATAATGAAATTGTCTGCA
ATGAATTAGTTTGATGGTTAAATATGCTATCATGATTATGTGATATTATAACCAAAGGAT
TATGTAATCGCAAATGAATCAAATCTGTGTAAACATCAGTAAAAACCAACCAGTATGTGT
AATCCTCTCTTTGATATAGTAATCCCGACCCTATAGAAAGATTTGTAACATTATGATACA
TAGTGAACAAACTAACAGGATATCCTGGAGCCGATAATCCGGTCTGAATGTCGACAGCAT
GTACATAACCATCAGGTGTTGTGTAAACAGACCATGGTGAACAAGTTTGTAATTTTTGAC
ATCCAGGAACAATTATCACTTGACCAGTTTGTTCTCCATACTCCAATGTAGTCATTGTAG
TATTAGAAATAGCGGGGCAATATGTCCAATAAATTTGAGAATGATATTTTTTAATTGATA
CAAGAAGAACAAGACGTAAACAAGAATAAATATCCACTTGTAGACAACAAGTA

consensusID : consensus_4491#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [CGGTAATGATCTACTCCTCAATAACATTAAACCATGATTTGACAATAAGAGATATGAAGGTGGTGTTGATACTCCAGCTGGTAACGGTAAAGGTTTTGGAGATAATGAAATTGTCTGCAATGAATTAGTTTGATGGTTAAATATGTTATCATGATTATGTGATATTATAACCAAAGGATTATGTAATCGCAAATGAATCAAATTTGTGTAAACATCAGTAAAAACCAACCAGTATGTGTAATCCTCTCTTTGATATAGTAATCCCGACCCTATAGAAAGATTTGTAACATTATGATACATAGTGAACAAACTAACAGGAATCCTGGAGCCGATATCCGTCTGAATGTCGACAGCATGTACATAACCTCAGGTGTTGTGTAAACAGACCAGGGCTA]

[-] EMBL CD134230             [CGGTAATGATCTACTCCTCAATAACATTAAACCATGATTTGACAATAAGAGATATGAAGGTGGTGTTGATACTCCAGCTGGTAACGGTAAAGGTTTTGGAGATAATGAAATTGTCTGCAATGAATTAGTTTGATGGTTAAATATGTTATCATGATTATGTGATATTATAACCAAAGGATTATGTAATCGCAAATGAATCAAATTTGTGTAAACATCAGTAAAAACCAACCAGTATGTGTAATCCTCTCTTTGATATAGTAATCCCGACCCTATAGAAAGATTTGTAACATTATGATACATAGTGAACAAACTAACAGGAATCCTGGAGCCGATATCCGTCTGAATGTCGACAGCATGTACATAACCTCAGGTGTTGTGTAAACAGACCAGGGCTA]




>consensus_4491#1
CGGTAATGATCTACTCCTCAATAACATTAAACCATGATTTGACAATAAGAGATATGAAGG
TGGTGTTGATACTCCAGCTGGTAACGGTAAAGGTTTTGGAGATAATGAAATTGTCTGCAA
TGAATTAGTTTGATGGTTAAATATGTTATCATGATTATGTGATATTATAACCAAAGGATT
ATGTAATCGCAAATGAATCAAATTTGTGTAAACATCAGTAAAAACCAACCAGTATGTGTA
ATCCTCTCTTTGATATAGTAATCCCGACCCTATAGAAAGATTTGTAACATTATGATACAT
AGTGAACAAACTAACAGGAATCCTGGAGCCGATATCCGTCTGAATGTCGACAGCATGTAC
ATAACCTCAGGTGTTGTGTAAACAGACCAGGGCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4491#0      TGCTCCCGNGCCGC-CATGGCTGGCCGCGGGCAATTCGATTCATCCATCTCGAGATG-GA 58
consensus_4491#1      CGGTAATGATCTACTCCTCAATAACATTAAACCAT--GATTTGACAATAA-GAGATATGA 57
                       * *   *  *  * * *   *  *      * **  ****   * **   *****  **

consensus_4491#0      AGGTGATGTTGATACTCCAGCTGGTAACGGTAAAGGTTTTGGAGATAATGAAATTGTCTG 118
consensus_4491#1      AGGTGGTGTTGATACTCCAGCTGGTAACGGTAAAGGTTTTGGAGATAATGAAATTGTCTG 117
                      ***** ******************************************************

consensus_4491#0      CAATGAATTAGTTTGATGGTTAAATATGCTATCATGATTATGTGATATTATAACCAAAGG 178
consensus_4491#1      CAATGAATTAGTTTGATGGTTAAATATGTTATCATGATTATGTGATATTATAACCAAAGG 177
                      **************************** *******************************

consensus_4491#0      ATTATGTAATCGCAAATGAATCAAATCTGTGTAAACATCAGTAAAAACCAACCAGTATGT 238
consensus_4491#1      ATTATGTAATCGCAAATGAATCAAATTTGTGTAAACATCAGTAAAAACCAACCAGTATGT 237
                      ************************** *********************************

consensus_4491#0      GTAATCCTCTCTTTGATATAGTAATCCCGACCCTATAGAAAGATTTGTAACATTATGATA 298
consensus_4491#1      GTAATCCTCTCTTTGATATAGTAATCCCGACCCTATAGAAAGATTTGTAACATTATGATA 297
                      ************************************************************

consensus_4491#0      CATAGTGAACAAACTAACAGGATATCCTGGAGCCGATAATCCGGTCTGAATGTCGACAGC 358
consensus_4491#1      CATAGTGAACAAACTAACAGGA-ATCCTGGAGCCGATATCC--GTCTGAATGTCGACAGC 354
                      ********************** ***************  *  *****************

consensus_4491#0      ATGTACATAACCATCAGGTGTTGTGTAAACAGACCATGGTGAACAAGTTTGTAATTTTTG 418
consensus_4491#1      ATGTACATAACC-TCAGGTGTTGTGTAAACAGACCAGGGCTA------------------ 395
                      ************ *********************** **  *                  

consensus_4491#0      ACATCCAGGAACAATTATCACTTGACCAGTTTGTTCTCCATACTCCAATGTAGTCATTGT 478
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      AGTATTAGAAATAGCGGGGCAATATGTCCAATAAATTTGAGAATGATATTTTTTAATTGA 538
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      TACAAGAAGAACAAGACGTAAACAAGAATAAATATCCACTTGTAGACAACAAGTA 593
consensus_4491#1      -------------------------------------------------------