These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 886 fasta sequence [TCATAAATAATCAATCGAATTTAGCTCCAGATCTATTTAAATTAGATCAAATTTCCAATCATCATCCTTTAAGTACATTTGGCTTTTATTTATTTATGAAAACGAATGTATTACAGAAATTGTCTATACCTTCAGTGACAATGTTGAATTGTTTAAGACAAATTGAGTCACGATACAATTCAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTACTACATGCAACTTATCAATTATTTCAATGTAATAGTTTAAAAAATATCTTCAGTGATCTTGAAACATTCGCAATTTTCTTTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAAATCAATACCTTATAAATACAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTACATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGTTTTTACAAAATATTTTACAAATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAGTAAGTAAGGTATTATCTACCGATATGAGTAAACATATGTCATTATTGGCTGATTTAAAAACAAGCGTTGAAAAACAAAAGGCATTTCAAGGCAATGTAATCAATCTGGATAGTTATTCAGCTCGTATGCAGATATTAGAATGTATAATACATGCAGCTGATTTAAGTAATCCAACAAAGCCATTAAAAATCTATCAAGAATGGGTATCAAGAATTATGGAAGAAATGTTTCGTCAAGGTGATCAAGAGAAACAATATGGAATTGAAATTAGTCCAATGTGTGATAGAGAAACTGCATGCATTTACAGTACACAAATTGGTTTCATTGACTATATAGTTTATCCATTATGGGAGACAATGGCTGA] [-] EMBL CD145431 [TCATAAATAATCAATCGAATTTAGCTCCAGATCTATTTAAATTAGATCAAATTTCCAATCATCATCCTTTAAGTACATTTGGCTTTTATTTATTTATGAAAACGAATGTATTACAGAAATTGTCTATACCTTCAGTGACAATGTTGAATTGTTTAAGACAAATTGAGTCACGATACAATTCAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTACTACATGCAACTTATCAATTATTTCAATGTAATAGTTTAAAAAATATCTTCAGTGATCTTGAAACATTCGCAATTTTCTTTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAAATCAATACCTTATAAATACAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTACATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGTTTTTACAAAATAT ] [+] EMBL CD183473 [ TTAACAAATCAATACCTTATAAATACAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTACATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGATTTTACAAAATATTTTACAAATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAGTAAGTAAGGTATTATCTACCGATATGAGTAAACATATGTCATTATTGGCTGATTTAAAAACAAGCGTTGAAAAACAAAAGGCATTTCAAGGCAATGTAATCAATCTGGATAGTTATTCAGCTCGTATGCAGATATTAGAATGTATAATACATGCAGCTGATTTAAGTAATCCAACAAAGCCATTAAAAATCTATCAAGAATGGGTATCAAGAATTATGGAAGAAATGTTTCGTCAAGGTGATCAAGAGAAACAATATGGAATTGAAATTAGTCCAATGTGTGATAGAGAAACTGCATGCATTTACAGTACACAAATTGGTTTCATTGACTATATAGTTTATCCATTATGGGAGACAATGGCTGA] consensusID : consensus_4497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [TTGAGTCACGATACAATTCAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTACTACATGCAACTTATCAATTATTTCAATGTAATAGTCTAAAAAATATCTTCAGTGATCTTGAAACATTTGCAATTTTCTTTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAAATCAATACCTTATAAATACAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTACATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGATTTTACAAAATATTTTACAAATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAGTAAGTAGTATGTTTAGTTTTTTTTAATATTTTAATAAATTAAATTTCTTTGAAAACCAATGATAGTTTTCCATGACTTANAAACAGCATTTGACTCTGT] [+] EMBL CD189206 [TTGAGTCACGATACAATTCAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTACTACATGCAACTTATCAATTATTTCAATGTAATAGTCTAAAAAATATCTTCAGTGATCTTGAAACATTTGCAATTTTCTTTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAAATCAATACCTTATAAATACAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTACATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGATTTTACAAAATATTTTACAAATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAGTAAGTAGTATGTTTAGTTTTTTTTAATATTTTAATAAATTAAATTTCTTTGAAAACCAATGATAGTTTTCCATGACTTANAAACAGCATTTGACTCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4497#0 TCATAAATAATCAATCGAATTTAGCTCCAGATCTATTTAAATTAGATCAAATTTCCAATC 60 consensus_4497#1 ------------------------------------------------------------ consensus_4497#0 ATCATCCTTTAAGTACATTTGGCTTTTATTTATTTATGAAAACGAATGTATTACAGAAAT 120 consensus_4497#1 ------------------------------------------------------------ consensus_4497#0 TGTCTATACCTTCAGTGACAATGTTGAATTGTTTAAGACAAATTGAGTCACGATACAATT 180 consensus_4497#1 ------------------------------------------TTGAGTCACGATACAATT 18 ****************** consensus_4497#0 CAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTACTACATGCAACTTATCAAT 240 consensus_4497#1 CAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTACTACATGCAACTTATCAAT 78 ************************************************************ consensus_4497#0 TATTTCAATGTAATAGTTTAAAAAATATCTTCAGTGATCTTGAAACATTCGCAATTTTCT 300 consensus_4497#1 TATTTCAATGTAATAGTCTAAAAAATATCTTCAGTGATCTTGAAACATTTGCAATTTTCT 138 ***************** ******************************* ********** consensus_4497#0 TTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAAATCAATACCTTATAAATA 360 consensus_4497#1 TTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAAATCAATACCTTATAAATA 198 ************************************************************ consensus_4497#0 CAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTAC 420 consensus_4497#1 CAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTAC 258 ************************************************************ consensus_4497#0 ATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGTTTTTACAAAATATTTTACAA 480 consensus_4497#1 ATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGATTTTACAAAATATTTTACAA 318 *************************************** ******************** consensus_4497#0 ATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAGTAAGTAAGGTATT--ATC 538 consensus_4497#1 ATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAGTAAGTAGTATGTTTAGTT 378 ************************************************ * ** * consensus_4497#0 TACCGATATGAGTAAACATATGTCATTATTGGCTGATTTAAAAACAAGCGTTGAAAAACA 598 consensus_4497#1 TTTTTTAATATTTTAATAAATTAAATTTCTTTGAAAACCAATGATAGTTTTCCATGACTT 438 * ** * ** * ** *** * * ** * * * * * consensus_4497#0 AAAGGCATTTCAAGGCAATGTAATCAATCTGGATAGTTATTCAGCTCGTATGCAGATATT 658 consensus_4497#1 ANAAACAGCATTTGACTCTGT--------------------------------------- 459 * * ** * * *** consensus_4497#0 AGAATGTATAATACATGCAGCTGATTTAAGTAATCCAACAAAGCCATTAAAAATCTATCA 718 consensus_4497#1 ------------------------------------------------------------ consensus_4497#0 AGAATGGGTATCAAGAATTATGGAAGAAATGTTTCGTCAAGGTGATCAAGAGAAACAATA 778 consensus_4497#1 ------------------------------------------------------------ consensus_4497#0 TGGAATTGAAATTAGTCCAATGTGTGATAGAGAAACTGCATGCATTTACAGTACACAAAT 838 consensus_4497#1 ------------------------------------------------------------ consensus_4497#0 TGGTTTCATTGACTATATAGTTTATCCATTATGGGAGACAATGGCTGA 886 consensus_4497#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||