These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [TTGTCCTCACGGATTCTGTCAGTTTGCTGGAAGATGTGGATGTCAGTGAAGTTTGATTATCAGTGAGTGTTGTTGGTGTTGATGTGGATGTGGATGGAGTGCTCGTGAATGTTGCCGGTGTGCGATCAGTAGTGAATGAAAGAGCTTATTCTGTCGAGTGTAGTTGTGCAGTTATTTTTGTTCCTGAAAGCGCAGAGACGCACTAGCGTTGTCTGTCGTCGCATTGGGGACAACAGAGAAGGATGATTCCATAGTGGGTGAGATGGTAATGATGCTGTTTCAATGTGGGATTGTACAGTTGTATGGCGAATGAGATGAATTGAAGTGATCATGTGATGTGGTATTGATGATAGATTGTGTTTTTCTAGCGACGTGTTTGTTTCCGTAATAACTGTAAGAGTGTTTACTTTGTTGTTGTTGTTGTGTGTGTGTGTGTGTGTGAGAATGACTAGGTGCTTGTTGTTAGT] [+] EMBL CD145533 [TTGTCCTCACGGATTCTGTCAGTTTGCTGGAAGATGTGGATGTCAGTGAAGTTTGATTATCAGTGAGTGTTGTTGGTGTTGATGTGGATGTGGATGGAGTGCTCGTGAATGTTGCCGGTGTGCGATCAGTAGTGAATGAAAGAGCTTATTCTGTCGAGTGTAGTTGTGCAGTTATTTTTGTTCCTGAAAGCGCAGAGACGCACTAGCGTTGTCTGTCGTCGCATTGGGGACAACAGAGAAGGATGATTCCATAGTGGGTGAGATGGTAATGATGCTGTTTCAATGTGGGATTGTACAGTTGTATGGCGAATGAGATGAATTGAAGTGATCATGTGATGTGGTATTGATGATAGATTGTGTTTTTCTAGCGACGTGTTTGTTTCCGTAATAACTGTAAGAGTGTTTACTTTGTTGTTGTTGTTGTGTGTGTGTGTGTGTGTGAGAATGACTAGGTGCTTGTTGTTAGT] consensusID : consensus_450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [AGGGGAAGCACGGAATACAATGGGCATCTCAGAATCAATTAGACGATTTGAACTCCGCAGACGACCTAGCCTTCCTATCTCATACACACGAACAAATACAGACGGAGACAGCAAATGTAGCAGCGGCCTCTGCATCAATAGGCCTCAGCATACACAAAGGAGAAAGCAAGATTCTCATATAAAACACGGAGAACACCAACTCAATCACAATTGATGGAGAAACTCTGGAAGGTGTAGAAATATTCACGTATCTGGGAAGCATCATTGATGAACAAGCAGAATCTGATGCAGATGTAAAGGCAAGGATTGGCAAAGCAAGGACCGCATTCCTACAATTGAAGAACATATGGAACTCAAAACAACTCTC] [+] EMBL CD094202 [AGGGGAAGCACGGAATACAATGGGCATCTCAGAATCAATTAGACGATTTGAACTCCGCAGACGACCTAGCCTTCCTATCTCATACACACGAACAAATACAGACGGAGACAGCAAATGTAGCAGCGGCCTCTGCATCAATAGGCCTCAGCATACACAAAGGAGAAAGCAAGATTCTCATATAAAACACGGAGAACACCAACTCAATCACAATTGATGGAGAAACTCTGGAAGGTGTAGAAATATTCACGTATCTGGGAAGCATCATTGATGAACAAGCAGAATCTGATGCAGATGTAAAGGCAAGGATTGGCAAAGCAAGGACCGCATTCCTACAATTGAAGAACATATGGAACTCAAAACAACTCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_450#0 TTGTCCTCACGGATTCTGTCAGTTTGCTGGAAGATGTGGATGTCAGTGAAGTTTGATTAT 60 consensus_450#1 ------------------------------------------------------------ consensus_450#0 CAGTGAGTGTTGTTGGTGTTGATGTGGATGTGGATGGAGTGCTCGTGAATGTT--GCCGG 118 consensus_450#1 --------------AGGGGAAGCACGGAATACAATGGGCATCTCAGAATCAATTAGACGA 46 * * *** **** *** * * * ** consensus_450#0 TGTGCGATCAGTAGTGAATGAAAGAGCTTATTCTGTCGAGTGTAGTTGTGCAGTTATTTT 178 consensus_450#1 TTTGAACTCCGCAG---ACGACCTAGCCT-TCCTATCTCATACACACGAACAAATACAGA 102 * ** ** * ** * ** *** * * ** ** * * * ** ** consensus_450#0 TGTTC-CTGAAAGCGCAGAGACGCACTA-GCGTTGTCTGTCGTCGCATTGGGGACAACAG 236 consensus_450#1 CGGAGACAGCAAATGTAGCAGCGGCCTCTGCATCAATAG--GCCTCAGCATACACAAAGG 160 * * * ** * ** ** ** ** * * * * ** **** * consensus_450#0 AGAAGG-ATGATTCCATAGTGGGTGAGATGGTAATGATGCTGTTTCAATGTGGGATTGTA 295 consensus_450#1 AGAAAGCAAGATTCT----CATATAAAACACGGAGAACACCAACTCAATCACAATTGATG 216 **** * * ***** * * * * * * ***** * * consensus_450#0 CAGTTG-TATGGCGAATG-AGATGAATTGAAGTGATCATGTGATGTGGTATTGATGATAG 353 consensus_450#1 GAGAAACTCTGGAAGGTGTAGAAATATTCACGT-ATC-TGGGAAGCATCATTGATGAACA 274 ** * *** ** *** *** * ** *** ** ** * ******** consensus_450#0 ATTGTGTTTTTCTAGCGACGTGTTTGTTTCCGTAATAACTGTAAGAGTGTTTACTTTGTT 413 consensus_450#1 AGCAGAATCT------GATGCAGATGTAAAGGCAAGGATTGGCAAAGCAAGGACCGCATT 328 * * * ** * *** * ** * ** * ** ** ** consensus_450#0 GTTGTTGTTGTGTGTGTGTGTGTGTGTGAGAATGACTAGGTGCTTGTTGTTAGT 467 consensus_450#1 CCTACAATTGAA-GAACATATGGAACTCAAAACAACTCTC-------------- 367 * *** * * ** * * ** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||