These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 460 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTTAAAAATATTTATTAGGAAAAATTACATAAATATTGGAACATTAAGCAACGATTAGTTCAGTAAAACATATACCCTTCTAGGGAGTAATCGCATGTTGCTTCTCCAATGGGGCCTCCAATACCAATGTATTGCCAACTACCTGAGCAGAAACAGATAACGGGTCAACTGTCTCTGGAATCGCATACGACTGACTGAACTCTGCGAATGAGCTCGACCTTCCAGGGAGATCACCCTTCTGCTTATGATGACGTCCACTAACCACACACGATTCGAGTCAACATTCACACACAAGTCTTCAGGCTTGTACACTGNGTCCACTGGAACTTTCACATGCAATCGCTTTCCACCTGAACCATCATCCCCAGTCGTATTATTTTGCTCTAGTGAGTATCGCATGTTG] [+] EMBL AI395195 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTTAAAAATATTTATTAGGAAAAATTACATAAATATTGGAACATTAAGCAACGATTAGTTCAGTAAAACATATACCCTTCTAGGGAGTAATCGCATGTTGCTTCTCCAATGGGGCCTCCAATACCAATGTATTGCCAACTACCTGAGCAGAAACAGATAACGGGTCAACTGTCTCTGGAATCGCATACGACTGACTGAACTCTGCGAATGAGCTCGACCTTCCAGGGAGATCACCCTT ] [+] EMBL CD125625 [ attattttgCTTCTAGTGAGTAATCGCATGTTGCTTCTCCAATGGCGCCTCCAATACCAATGTATTGCCAACTACCTGAGCAGAAACAGATAACGGATCAACTGTCTCTGGAATCGCATACGACTGACTGAACTCTGCGAATGAGCTCGACCTTCCATGTTGATCACTCTTCTGCTTATGATGACGTCCACTAACCACACACGATTCGAGTCAACATTCACACACAAGTCTTCAGGCTTGTACACTGNGTCCACTGGAACTTTCACATGCAATCGCTTTCCACCTGAACCATCATCCCCAGTCGTATTATTTTGCTCTAGTGAGTATCGCATGTTG] consensusID : consensus_4510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [GATATTTGAGAATGATTCCTATGAATACTCTCATTACTACTACCACTCTCAGTTAATACGCCTAAATCAGTCTCCTCCAGTTTCAAATGACACGTTTGAGAAGGTGGATATTGATGTGTCTGTTGCTCCAGCATTCTTGATTAAATTTTACGATAATGATGTCGATAGACTCTATATACAAGGTTCTGGTACGATACGTATGTACAGTGAAGGCCCCGTATAAGGAATAGTCAATTTTTTGAAAGAATTTGATGTGAGCAACTTGGAAATCTCAAATGGAAAGGAATTATCGGCTATCACACTGACTTATCATAAACAAGATAATGGTGAAAGTTTTACATTCAAGGTAACCAGTTTGATAT] [+] EMBL CD165553 [GATATTTGAGAATGATTCCTATGAATACTCTCATTACTACTACCACTCTCAGTTAATACGCCTAAATCAGTCTCCTCCAGTTTCAAATGACACGTTTGAGAAGGTGGATATTGATGTGTCTGTTGCTCCAGCATTCTTGATTAAATTTTACGATAATGATGTCGATAGACTCTATATACAAGGTTCTGGTACGATACGTATGTACAGTGAAGGCCCCGTATAAGGAATAGTCAATTTTTTGAAAGAATTTGATGTGAGCAACTTGGAAATCTCAAATGGAAAGGAATTATCGGCTATCACACTGACTTATCATAAACAAGATAATGGTGAAAGTTTTACATTCAAGGTAACCAGTTTGATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4510#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTT 60 consensus_4510#1 -----------------------------------------------------GATATTT 7 * **** consensus_4510#0 AAAAATATTTATTAGGAAAAATTACATAAATATTGGAACATTAAGCAACGATTAGTTCAG 120 consensus_4510#1 GAGAATGATTCCTATGAATACTCTCATTACTACTACCACTCTCAG------TTAATACGC 61 * *** ** ** *** * * *** * ** * ** * ** *** * * consensus_4510#0 TAAAACATATACCCTTCTAGGGAGTAATCGCATGTTGCTTCTCCAATGGGGCCTCCAATA 180 consensus_4510#1 CTAAAT-CAGTCTCCTCCAGTTTCAAATGACACGTT----TGAGAAGGTGGATATTGATG 116 *** * * * ** ** *** ** *** ** * ** ** consensus_4510#0 CCAATGTATTGCCAACTACCTGAGCAGAAACAGATAACGGGTCAACTGTCTCTGGAATCG 240 consensus_4510#1 TGTCTGTTGCTCCAGCATTCTTGATTAAATT---TTACGATAATGATGTCGATAGACTC- 172 *** *** * ** ** * *** **** * ** ** consensus_4510#0 CATACGACTGACTGAACTCTGCGAATGAGCTCGACCTTCCAGGGAGATCACCCTTCTGCT 300 consensus_4510#1 TATAT-----ACAAGGTTCTG-GTACGA-TACGTATGTACAGTGAAGGCCCCGTATAAGG 225 *** ** **** * * ** ** * *** ** * ** * consensus_4510#0 TATGATGACGTCCACTAACCACACACGATTCGAGTCAACATTCACA-CACAAGTCTTCAG 359 consensus_4510#1 AATAGTCA-ATTTTTTGAAAGAATTTGATGTGAG-CAACTTGGAAATCTCAAATGGAAAG 283 ** * * * * * * *** *** **** * * * * *** * ** consensus_4510#0 GCTTGTACACTGNGTCCACTGGAACTTTCACATGCAATCGCTTTCCACCTGAACCATCAT 419 consensus_4510#1 GAATTATCGGCTATCACACTG-ACTTATCATAAACAAGA---TAATGGTGAAAGTTTTAC 339 * * * ***** * * *** * *** * ** * * consensus_4510#0 CCCCAGTCGTATTATTTTGCTCTAGTGAGTATCGCATGTTG 460 consensus_4510#1 ATTCAAGGTAACCAGTTTGATAT------------------ 362 ** * * **** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||