cluster # 4510

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Schistosoma mansoni
cluster # 4510 cluster # 4510 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4510#0 length = 460 sequences # 2

consensus_4510#1 length = 362 sequences # 1

consensusID : consensus_4510#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 460
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTTAAAAATATTTATTAGGAAAAATTACATAAATATTGGAACATTAAGCAACGATTAGTTCAGTAAAACATATACCCTTCTAGGGAGTAATCGCATGTTGCTTCTCCAATGGGGCCTCCAATACCAATGTATTGCCAACTACCTGAGCAGAAACAGATAACGGGTCAACTGTCTCTGGAATCGCATACGACTGACTGAACTCTGCGAATGAGCTCGACCTTCCAGGGAGATCACCCTTCTGCTTATGATGACGTCCACTAACCACACACGATTCGAGTCAACATTCACACACAAGTCTTCAGGCTTGTACACTGNGTCCACTGGAACTTTCACATGCAATCGCTTTCCACCTGAACCATCATCCCCAGTCGTATTATTTTGCTCTAGTGAGTATCGCATGTTG]

[+] EMBL AI395195             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTTAAAAATATTTATTAGGAAAAATTACATAAATATTGGAACATTAAGCAACGATTAGTTCAGTAAAACATATACCCTTCTAGGGAGTAATCGCATGTTGCTTCTCCAATGGGGCCTCCAATACCAATGTATTGCCAACTACCTGAGCAGAAACAGATAACGGGTCAACTGTCTCTGGAATCGCATACGACTGACTGAACTCTGCGAATGAGCTCGACCTTCCAGGGAGATCACCCTT                                                                                                                                                                     ]
[+] EMBL CD125625             [                                                                                                                            attattttgCTTCTAGTGAGTAATCGCATGTTGCTTCTCCAATGGCGCCTCCAATACCAATGTATTGCCAACTACCTGAGCAGAAACAGATAACGGATCAACTGTCTCTGGAATCGCATACGACTGACTGAACTCTGCGAATGAGCTCGACCTTCCATGTTGATCACTCTTCTGCTTATGATGACGTCCACTAACCACACACGATTCGAGTCAACATTCACACACAAGTCTTCAGGCTTGTACACTGNGTCCACTGGAACTTTCACATGCAATCGCTTTCCACCTGAACCATCATCCCCAGTCGTATTATTTTGCTCTAGTGAGTATCGCATGTTG]




>consensus_4510#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTT
AAAAATATTTATTAGGAAAAATTACATAAATATTGGAACATTAAGCAACGATTAGTTCAG
TAAAACATATACCCTTCTAGGGAGTAATCGCATGTTGCTTCTCCAATGGGGCCTCCAATA
CCAATGTATTGCCAACTACCTGAGCAGAAACAGATAACGGGTCAACTGTCTCTGGAATCG
CATACGACTGACTGAACTCTGCGAATGAGCTCGACCTTCCAGGGAGATCACCCTTCTGCT
TATGATGACGTCCACTAACCACACACGATTCGAGTCAACATTCACACACAAGTCTTCAGG
CTTGTACACTGNGTCCACTGGAACTTTCACATGCAATCGCTTTCCACCTGAACCATCATC
CCCAGTCGTATTATTTTGCTCTAGTGAGTATCGCATGTTG

consensusID : consensus_4510#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [GATATTTGAGAATGATTCCTATGAATACTCTCATTACTACTACCACTCTCAGTTAATACGCCTAAATCAGTCTCCTCCAGTTTCAAATGACACGTTTGAGAAGGTGGATATTGATGTGTCTGTTGCTCCAGCATTCTTGATTAAATTTTACGATAATGATGTCGATAGACTCTATATACAAGGTTCTGGTACGATACGTATGTACAGTGAAGGCCCCGTATAAGGAATAGTCAATTTTTTGAAAGAATTTGATGTGAGCAACTTGGAAATCTCAAATGGAAAGGAATTATCGGCTATCACACTGACTTATCATAAACAAGATAATGGTGAAAGTTTTACATTCAAGGTAACCAGTTTGATAT]

[+] EMBL CD165553             [GATATTTGAGAATGATTCCTATGAATACTCTCATTACTACTACCACTCTCAGTTAATACGCCTAAATCAGTCTCCTCCAGTTTCAAATGACACGTTTGAGAAGGTGGATATTGATGTGTCTGTTGCTCCAGCATTCTTGATTAAATTTTACGATAATGATGTCGATAGACTCTATATACAAGGTTCTGGTACGATACGTATGTACAGTGAAGGCCCCGTATAAGGAATAGTCAATTTTTTGAAAGAATTTGATGTGAGCAACTTGGAAATCTCAAATGGAAAGGAATTATCGGCTATCACACTGACTTATCATAAACAAGATAATGGTGAAAGTTTTACATTCAAGGTAACCAGTTTGATAT]




>consensus_4510#1
GATATTTGAGAATGATTCCTATGAATACTCTCATTACTACTACCACTCTCAGTTAATACG
CCTAAATCAGTCTCCTCCAGTTTCAAATGACACGTTTGAGAAGGTGGATATTGATGTGTC
TGTTGCTCCAGCATTCTTGATTAAATTTTACGATAATGATGTCGATAGACTCTATATACA
AGGTTCTGGTACGATACGTATGTACAGTGAAGGCCCCGTATAAGGAATAGTCAATTTTTT
GAAAGAATTTGATGTGAGCAACTTGGAAATCTCAAATGGAAAGGAATTATCGGCTATCAC
ACTGACTTATCATAAACAAGATAATGGTGAAAGTTTTACATTCAAGGTAACCAGTTTGAT
AT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4510#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTT 60
consensus_4510#1      -----------------------------------------------------GATATTT 7
                                                                            * ****

consensus_4510#0      AAAAATATTTATTAGGAAAAATTACATAAATATTGGAACATTAAGCAACGATTAGTTCAG 120
consensus_4510#1      GAGAATGATTCCTATGAATACTCTCATTACTACTACCACTCTCAG------TTAATACGC 61
                       * ***  **  ** *** * *  *** * ** *   **  * **      *** * *  

consensus_4510#0      TAAAACATATACCCTTCTAGGGAGTAATCGCATGTTGCTTCTCCAATGGGGCCTCCAATA 180
consensus_4510#1      CTAAAT-CAGTCTCCTCCAGTTTCAAATGACACGTT----TGAGAAGGTGGATATTGATG 116
                        ***   *  * * ** **     ***  ** ***        ** * **      ** 

consensus_4510#0      CCAATGTATTGCCAACTACCTGAGCAGAAACAGATAACGGGTCAACTGTCTCTGGAATCG 240
consensus_4510#1      TGTCTGTTGCTCCAGCATTCTTGATTAAATT---TTACGATAATGATGTCGATAGACTC- 172
                          ***    *** *   **      **     * ***       ****  * ** ** 

consensus_4510#0      CATACGACTGACTGAACTCTGCGAATGAGCTCGACCTTCCAGGGAGATCACCCTTCTGCT 300
consensus_4510#1      TATAT-----ACAAGGTTCTG-GTACGA-TACGTATGTACAGTGAAGGCCCCGTATAAGG 225
                       ***      **     **** * * **   **    * *** **   * ** *      

consensus_4510#0      TATGATGACGTCCACTAACCACACACGATTCGAGTCAACATTCACA-CACAAGTCTTCAG 359
consensus_4510#1      AATAGTCA-ATTTTTTGAAAGAATTTGATGTGAG-CAACTTGGAAATCTCAAATGGAAAG 283
                       **  * *  *    * *    *   ***  *** **** *  * * * *** *    **

consensus_4510#0      GCTTGTACACTGNGTCCACTGGAACTTTCACATGCAATCGCTTTCCACCTGAACCATCAT 419
consensus_4510#1      GAATTATCGGCTATCACACTG-ACTTATCATAAACAAGA---TAATGGTGAAAGTTTTAC 339
                      *  *   *        ***** *  * *** *  ***     *        **   * * 

consensus_4510#0      CCCCAGTCGTATTATTTTGCTCTAGTGAGTATCGCATGTTG 460
consensus_4510#1      ATTCAAGGTAACCAGTTTGATAT------------------ 362
                         **     *  * **** * *