cluster # 4516

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4516 cluster # 4516 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4516#0 length = 1082 sequences # 2

consensus_4516#1 length = 598 sequences # 1

consensusID : consensus_4516#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1082
fasta sequence

                              [GGCCGCGATGGCTCGCAGCACTTAATAGCGGTAGGTGAAATACAGTTCCAGCGCACTGAACGTCTGGTCATCGCCAAACACCTGTTTGGCGGCGGCCAGTGGCTTGACCCAGTTGTAGGACAGCGACGTATAGAACGATGGCGTGGGTGTCCAGTCGAGGAAAACCACACTTTCGTCGGCAAAGCGCCGATCGCTGACCGGTGCGCCCAGGTAGTTTTTCTCATCCAGCCAGAACTGGTAGTGAATCGCGCCGAGGGTCAGGGTTTCATTGAGGTGGGTCTTGAGGGAGAACTGCTGGACATTTTCGTTGCTGTTGAACAGCAGGTAATTGCCGACCACGTCCC-CGACCAGCCACGTGCTCCAGTCGACGAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGTTGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGTTGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGCTGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGGCGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTACCTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCGNAGG-TGTAATCCAGGNTGACGCCGGTCATGCGAAAATCGNCC-AGTCATCATCGGTGCGCAAGGGTG-AAG-CTGAGAC-TCAGCGCA-CATGAT-CCAGNCGA-GATCG-CGAAT--CTG-ACGCNG-TCGC-GGCCGAG-CA-TA-GCG-CAT-CTTG-ACTGGTC-AGG-TG-CATC--TGAC-ATGA---CCG-A-CGAT-AT-CT-GTGCGA---TCTTGGCTGAGGNCATNCTAGNGAGCGATATCNATCTGCTACTGTCCTGGGAATGTATCGTCATCCCAAATCAACCGACTAGGAACCTGGGGCTAAGGACACTCATATGTGCCCGCCCTCANGGACTGGCCTTATAATCCCCGGGGAGGGGGTGGCTCTCTCACCGCGGGGGGGGGGTTC]

[+] EMBL CD075168             [GGCCGCGATGGCTCGCAGCACTTAATAGCGGTAGGTGAAATACAGTTCCAGCGCACTGAACGTCTGGTCATCGCCAAACACCTGTTTGGCGGCGGCCAGTGGCTTGACCCAGTTGTAGGACAGCGACGTATAGAACGATGGCGTGGGTGTCCAGTCGAGGAAAACCACACTTTCGTCGGCAAAGCGCCGATCGCTGACCGGTGCGCCCAGGTAGTTTTTCTCATCCAGCCAGAACTGGTAGTGAATCGCGCCGAGGGTCAGGGTTTCATTGAGGTGGGTCTTGAGGGAGAACTGCTGGACATTTTCGTTGCTGTTGAACAGCAGGTAATTGCCGACCACGTCCC CGACCAGCCACGTGCTCCAGTCGACGAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGTTGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGTTGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGCTGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGGCGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTACCTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCGNAGG TGTAATCCAGGNTGACGCCGGTCATGCGAAAATCGNCC AGTCATCATCGGTGCGCAAGGGTG AAG CTGAGAC TCAGCGCA CATGAT CCAGNCGA GATCG CGAAT  CTG ACGCNG TCGC GGCCGAG CA TA GCG CAT CTTG ACTGGTC AGG TG CATC  TGAC ATGA   CCG A CGAT AT CT GTGCGA   TCTTGGCTGAGGNCATNCTAGNGAGCGATATCNATCTGCTACTGTCCTGGGAATGTATCGTCATCCCAAATCAACCGACTAGGAACCTGGGGCTAAGGACACTCATATGTGCCCGCCCTCANGGACTGGCCTTATAATCCCCGGGGAGGGGGTGGCTCTCTCACCGCGGGGGGGGGGTTC]
[-] EMBL CD080863             [                                                                                                                                                                                                                           CTCATCCAGCCAGAACTGGTAGTGAATCGCGCCGAGGGTCAGGGTTTCATTGAGGTGGGTCTTGAGGGAGAACTGCTGGACA TTTCG TGCTGTTGAACAGCAGGTAATTGCCGACCACGTCCCNCGACCAGCCACGTGCTCCAGTCGACGAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGTTGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGTTGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGCTGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGGCGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTACCTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCG AGGTTGTAATCCAGGTTGACGCCGGTCATGCGAAAATCGCCCAAGTCATCATCGGTGCGCAA GGTGAAAGCCTGAGACTTCAGCGCACCATGATCCCAGGCGAGGATCGCCGAATCCCTGAACGCGGTTCGCGGGCCGAGCCAGTAGGCGCCATCCTTGAACTGGTCGAGGTTGCCATCCATGACGATGAACCCCGTACCGATCATCCTCGTGCCAAATTNTTGGCcgcgag                                                                                                                                                                       ]




>consensus_4516#0
GGCCGCGATGGCTCGCAGCACTTAATAGCGGTAGGTGAAATACAGTTCCAGCGCACTGAA
CGTCTGGTCATCGCCAAACACCTGTTTGGCGGCGGCCAGTGGCTTGACCCAGTTGTAGGA
CAGCGACGTATAGAACGATGGCGTGGGTGTCCAGTCGAGGAAAACCACACTTTCGTCGGC
AAAGCGCCGATCGCTGACCGGTGCGCCCAGGTAGTTTTTCTCATCCAGCCAGAACTGGTA
GTGAATCGCGCCGAGGGTCAGGGTTTCATTGAGGTGGGTCTTGAGGGAGAACTGCTGGAC
ATTTTCGTTGCTGTTGAACAGCAGGTAATTGCCGACCACGTCCCCGACCAGCCACGTGCT
CCAGTCGACGAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGTT
GTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGTT
GAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGCT
GCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGGC
GTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTACC
TCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCGNA
GGTGTAATCCAGGNTGACGCCGGTCATGCGAAAATCGNCCAGTCATCATCGGTGCGCAAG
GGTGAAGCTGAGACTCAGCGCACATGATCCAGNCGAGATCGCGAATCTGACGCNGTCGCG
GCCGAGCATAGCGCATCTTGACTGGTCAGGTGCATCTGACATGACCGACGATATCTGTGC
GATCTTGGCTGAGGNCATNCTAGNGAGCGATATCNATCTGCTACTGTCCTGGGAATGTAT
CGTCATCCCAAATCAACCGACTAGGAACCTGGGGCTAAGGACACTCATATGTGCCCGCCC
TCANGGACTGGCCTTATAATCCCCGGGGAGGGGGTGGCTCTCTCACCGCGGGGGGGGGGT
TC

consensusID : consensus_4516#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [CCACGTGCTCCAGTCGACGAAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGTTGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGTTGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGCTGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGGCGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTACCTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCGAGGTTGTAATCCAGGTTGACGCCGGTCATGCGAAAATCGCCCAAGTCATCATCGGTGCGCAAGGTGAAAGCCTGAGACTTCAGCGCACCATGATCCCAGGCGAGGATCGCCGAATCCCTGAACGCGGTTCGCGGGCCGAGCCAGTAGGCGCCATCCTTGAACTGGTCGAGGTTGCCATCCATGACGATGAACCCCGTACCGATCGTCCTCGTGCCGAATTNTGGCCTCGG]

[-] EMBL CD081335             [CCACGTGCTCCAGTCGACGAAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGTTGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGTTGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGCTGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGGCGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTACCTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCGAGGTTGTAATCCAGGTTGACGCCGGTCATGCGAAAATCGCCCAAGTCATCATCGGTGCGCAAGGTGAAAGCCTGAGACTTCAGCGCACCATGATCCCAGGCGAGGATCGCCGAATCCCTGAACGCGGTTCGCGGGCCGAGCCAGTAGGCGCCATCCTTGAACTGGTCGAGGTTGCCATCCATGACGATGAACCCCGTACCGATCGTCCTCGTGCCGAATTNTGGCCTCGG]




>consensus_4516#1
CCACGTGCTCCAGTCGACGAAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGT
CGGTGAGGTTGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCG
GCAAGGTGTTGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACAC
CCTCGCCGCTGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGG
GCACTTTGGCGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGA
GCGTGCTACCTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCT
GGTCATCGAGGTTGTAATCCAGGTTGACGCCGGTCATGCGAAAATCGCCCAAGTCATCAT
CGGTGCGCAAGGTGAAAGCCTGAGACTTCAGCGCACCATGATCCCAGGCGAGGATCGCCG
AATCCCTGAACGCGGTTCGCGGGCCGAGCCAGTAGGCGCCATCCTTGAACTGGTCGAGGT
TGCCATCCATGACGATGAACCCCGTACCGATCGTCCTCGTGCCGAATTNTGGCCTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4516#0      GGCCGCGATGGCTCGCAGCACTTAATAGCGGTAGGTGAAATACAGTTCCAGCGCACTGAA 60
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      CGTCTGGTCATCGCCAAACACCTGTTTGGCGGCGGCCAGTGGCTTGACCCAGTTGTAGGA 120
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      CAGCGACGTATAGAACGATGGCGTGGGTGTCCAGTCGAGGAAAACCACACTTTCGTCGGC 180
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      AAAGCGCCGATCGCTGACCGGTGCGCCCAGGTAGTTTTTCTCATCCAGCCAGAACTGGTA 240
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      GTGAATCGCGCCGAGGGTCAGGGTTTCATTGAGGTGGGTCTTGAGGGAGAACTGCTGGAC 300
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      ATTTTCGTTGCTGTTGAACAGCAGGTAATTGCCGACCACGTCCCCGACCAGCCACGTGCT 360
consensus_4516#1      ---------------------------------------------------CCACGTGCT 9
                                                                         *********

consensus_4516#0      CCAGTCGACGAA-GCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGT 419
consensus_4516#1      CCAGTCGACGAAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGT 69
                      ************ ***********************************************

consensus_4516#0      TGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGT 479
consensus_4516#1      TGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGT 129
                      ************************************************************

consensus_4516#0      TGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGC 539
consensus_4516#1      TGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGC 189
                      ************************************************************

consensus_4516#0      TGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGG 599
consensus_4516#1      TGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGG 249
                      ************************************************************

consensus_4516#0      CGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTAC 659
consensus_4516#1      CGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTAC 309
                      ************************************************************

consensus_4516#0      CTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCGN 719
consensus_4516#1      CTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCGA 369
                      *********************************************************** 

consensus_4516#0      AGGTGTAATCCAGGNTGACGCCGGTCATGCGAAAATCGNCCA-GTCATCATCGGTGCGCA 778
consensus_4516#1      GGTTGTAATCCAGGTTGACGCCGGTCATGCGAAAATCGCCCAAGTCATCATCGGTGCGCA 429
                       * *********** *********************** *** *****************

consensus_4516#0      AGGGTGAAGC-TGAGACT-CAGCGCAC-ATGATCC-AGNCGAG-ATCGC-GAATCT---G 829
consensus_4516#1      AGGTGAAAGCCTGAGACTTCAGCGCACCATGATCCCAGGCGAGGATCGCCGAATCCCTGA 489
                      ***   **** ******* ******** ******* ** **** ***** *****     

consensus_4516#0      ACGCNGT-CGCGG-CCGAGC-ATAGCGCATCTTGACTGGTCAGGT-GCATCTGACATGAC 885
consensus_4516#1      ACGCGGTTCGCGGGCCGAGCCAGTAGGCGCCATCCTTGAACTGGTCGAGGTTGCCATCCA 549
                      **** ** ***** ****** *    **  * *   **  * *** *    ** ***   

consensus_4516#0      CGACGATATCTGTGCGATCTTGGCTGAGGNCATNCTAGNGAGCGATATCNATCTGCTACT 945
consensus_4516#1      TGACGATG--AACCCCGTACCGATCGTCCTCGTGCCGAATTNTGGCCTCGG--------- 598
                       ******       *  *   *   *    * * *        *   **           

consensus_4516#0      GTCCTGGGAATGTATCGTCATCCCAAATCAACCGACTAGGAACCTGGGGCTAAGGACACT 1005
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      CATATGTGCCCGCCCTCANGGACTGGCCTTATAATCCCCGGGGAGGGGGTGGCTCTCTCA 1065
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      CCGCGGGGGGGGGGTTC 1082
consensus_4516#1      -----------------