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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1082 fasta sequence
[GGCCGCGATGGCTCGCAGCACTTAATAGCGGTAGGTGAAATACAGTTCCAGCGCACTGAACGTCTGGTCATCGCCAAACACCTGTTTGGCGGCGGCCAGTGGCTTGACCCAGTTGTAGGACAGCGACGTATAGAACGATGGCGTGGGTGTCCAGTCGAGGAAAACCACACTTTCGTCGGCAAAGCGCCGATCGCTGACCGGTGCGCCCAGGTAGTTTTTCTCATCCAGCCAGAACTGGTAGTGAATCGCGCCGAGGGTCAGGGTTTCATTGAGGTGGGTCTTGAGGGAGAACTGCTGGACATTTTCGTTGCTGTTGAACAGCAGGTAATTGCCGACCACGTCCC-CGACCAGCCACGTGCTCCAGTCGACGAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGTTGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGTTGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGCTGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGGCGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTACCTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCGNAGG-TGTAATCCAGGNTGACGCCGGTCATGCGAAAATCGNCC-AGTCATCATCGGTGCGCAAGGGTG-AAG-CTGAGAC-TCAGCGCA-CATGAT-CCAGNCGA-GATCG-CGAAT--CTG-ACGCNG-TCGC-GGCCGAG-CA-TA-GCG-CAT-CTTG-ACTGGTC-AGG-TG-CATC--TGAC-ATGA---CCG-A-CGAT-AT-CT-GTGCGA---TCTTGGCTGAGGNCATNCTAGNGAGCGATATCNATCTGCTACTGTCCTGGGAATGTATCGTCATCCCAAATCAACCGACTAGGAACCTGGGGCTAAGGACACTCATATGTGCCCGCCCTCANGGACTGGCCTTATAATCCCCGGGGAGGGGGTGGCTCTCTCACCGCGGGGGGGGGGTTC]
[+] EMBL CD075168 [GGCCGCGATGGCTCGCAGCACTTAATAGCGGTAGGTGAAATACAGTTCCAGCGCACTGAACGTCTGGTCATCGCCAAACACCTGTTTGGCGGCGGCCAGTGGCTTGACCCAGTTGTAGGACAGCGACGTATAGAACGATGGCGTGGGTGTCCAGTCGAGGAAAACCACACTTTCGTCGGCAAAGCGCCGATCGCTGACCGGTGCGCCCAGGTAGTTTTTCTCATCCAGCCAGAACTGGTAGTGAATCGCGCCGAGGGTCAGGGTTTCATTGAGGTGGGTCTTGAGGGAGAACTGCTGGACATTTTCGTTGCTGTTGAACAGCAGGTAATTGCCGACCACGTCCC CGACCAGCCACGTGCTCCAGTCGACGAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGTTGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGTTGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGCTGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGGCGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTACCTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCGNAGG TGTAATCCAGGNTGACGCCGGTCATGCGAAAATCGNCC AGTCATCATCGGTGCGCAAGGGTG AAG CTGAGAC TCAGCGCA CATGAT CCAGNCGA GATCG CGAAT CTG ACGCNG TCGC GGCCGAG CA TA GCG CAT CTTG ACTGGTC AGG TG CATC TGAC ATGA CCG A CGAT AT CT GTGCGA TCTTGGCTGAGGNCATNCTAGNGAGCGATATCNATCTGCTACTGTCCTGGGAATGTATCGTCATCCCAAATCAACCGACTAGGAACCTGGGGCTAAGGACACTCATATGTGCCCGCCCTCANGGACTGGCCTTATAATCCCCGGGGAGGGGGTGGCTCTCTCACCGCGGGGGGGGGGTTC]
[-] EMBL CD080863 [ CTCATCCAGCCAGAACTGGTAGTGAATCGCGCCGAGGGTCAGGGTTTCATTGAGGTGGGTCTTGAGGGAGAACTGCTGGACA TTTCG TGCTGTTGAACAGCAGGTAATTGCCGACCACGTCCCNCGACCAGCCACGTGCTCCAGTCGACGAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGTTGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGTTGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGCTGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGGCGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTACCTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCG AGGTTGTAATCCAGGTTGACGCCGGTCATGCGAAAATCGCCCAAGTCATCATCGGTGCGCAA GGTGAAAGCCTGAGACTTCAGCGCACCATGATCCCAGGCGAGGATCGCCGAATCCCTGAACGCGGTTCGCGGGCCGAGCCAGTAGGCGCCATCCTTGAACTGGTCGAGGTTGCCATCCATGACGATGAACCCCGTACCGATCATCCTCGTGCCAAATTNTTGGCcgcgag ]
consensusID : consensus_4516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence
[CCACGTGCTCCAGTCGACGAAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGTTGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGTTGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGCTGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGGCGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTACCTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCGAGGTTGTAATCCAGGTTGACGCCGGTCATGCGAAAATCGCCCAAGTCATCATCGGTGCGCAAGGTGAAAGCCTGAGACTTCAGCGCACCATGATCCCAGGCGAGGATCGCCGAATCCCTGAACGCGGTTCGCGGGCCGAGCCAGTAGGCGCCATCCTTGAACTGGTCGAGGTTGCCATCCATGACGATGAACCCCGTACCGATCGTCCTCGTGCCGAATTNTGGCCTCGG]
[-] EMBL CD081335 [CCACGTGCTCCAGTCGACGAAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGTTGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGTTGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGCTGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGGCGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTACCTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCGAGGTTGTAATCCAGGTTGACGCCGGTCATGCGAAAATCGCCCAAGTCATCATCGGTGCGCAAGGTGAAAGCCTGAGACTTCAGCGCACCATGATCCCAGGCGAGGATCGCCGAATCCCTGAACGCGGTTCGCGGGCCGAGCCAGTAGGCGCCATCCTTGAACTGGTCGAGGTTGCCATCCATGACGATGAACCCCGTACCGATCGTCCTCGTGCCGAATTNTGGCCTCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4516#0 GGCCGCGATGGCTCGCAGCACTTAATAGCGGTAGGTGAAATACAGTTCCAGCGCACTGAA 60
consensus_4516#1 ------------------------------------------------------------
consensus_4516#0 CGTCTGGTCATCGCCAAACACCTGTTTGGCGGCGGCCAGTGGCTTGACCCAGTTGTAGGA 120
consensus_4516#1 ------------------------------------------------------------
consensus_4516#0 CAGCGACGTATAGAACGATGGCGTGGGTGTCCAGTCGAGGAAAACCACACTTTCGTCGGC 180
consensus_4516#1 ------------------------------------------------------------
consensus_4516#0 AAAGCGCCGATCGCTGACCGGTGCGCCCAGGTAGTTTTTCTCATCCAGCCAGAACTGGTA 240
consensus_4516#1 ------------------------------------------------------------
consensus_4516#0 GTGAATCGCGCCGAGGGTCAGGGTTTCATTGAGGTGGGTCTTGAGGGAGAACTGCTGGAC 300
consensus_4516#1 ------------------------------------------------------------
consensus_4516#0 ATTTTCGTTGCTGTTGAACAGCAGGTAATTGCCGACCACGTCCCCGACCAGCCACGTGCT 360
consensus_4516#1 ---------------------------------------------------CCACGTGCT 9
*********
consensus_4516#0 CCAGTCGACGAA-GCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGT 419
consensus_4516#1 CCAGTCGACGAAAGCCTTTGCTCAGTGGGTCCCAGGCTTTTTGCCGGTTGTCGGTGAGGT 69
************ ***********************************************
consensus_4516#0 TGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGT 479
consensus_4516#1 TGTCGTCGCCGGAAAAGCTCGCGTAGCGGTAGCCAAGGACCGGCGTCAGCGGCAAGGTGT 129
************************************************************
consensus_4516#0 TGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGC 539
consensus_4516#1 TGAAGGCATAGTCGGCCTGGGCATACCAGGCGCTGGCAGCGTAATCGACACCCTCGCCGC 189
************************************************************
consensus_4516#0 TGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGG 599
consensus_4516#1 TGCCCCGCTCCAGCGCGTACTCGGCATTCAGCGTCAGCGCCTATACGCCGGGCACTTTGG 249
************************************************************
consensus_4516#0 CGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTAC 659
consensus_4516#1 CGTTGAGCGCCCGCAGGTTATACACCTGCATCCCGTCCCGGCGGCGCGGGAGCGTGCTAC 309
************************************************************
consensus_4516#0 CTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCGN 719
consensus_4516#1 CTCTGGGGCCAAGGGCATTGACCTTCATGGCCATGGCGCCGAGCGTCACCTGGTCATCGA 369
***********************************************************
consensus_4516#0 AGGTGTAATCCAGGNTGACGCCGGTCATGCGAAAATCGNCCA-GTCATCATCGGTGCGCA 778
consensus_4516#1 GGTTGTAATCCAGGTTGACGCCGGTCATGCGAAAATCGCCCAAGTCATCATCGGTGCGCA 429
* *********** *********************** *** *****************
consensus_4516#0 AGGGTGAAGC-TGAGACT-CAGCGCAC-ATGATCC-AGNCGAG-ATCGC-GAATCT---G 829
consensus_4516#1 AGGTGAAAGCCTGAGACTTCAGCGCACCATGATCCCAGGCGAGGATCGCCGAATCCCTGA 489
*** **** ******* ******** ******* ** **** ***** *****
consensus_4516#0 ACGCNGT-CGCGG-CCGAGC-ATAGCGCATCTTGACTGGTCAGGT-GCATCTGACATGAC 885
consensus_4516#1 ACGCGGTTCGCGGGCCGAGCCAGTAGGCGCCATCCTTGAACTGGTCGAGGTTGCCATCCA 549
**** ** ***** ****** * ** * * ** * *** * ** ***
consensus_4516#0 CGACGATATCTGTGCGATCTTGGCTGAGGNCATNCTAGNGAGCGATATCNATCTGCTACT 945
consensus_4516#1 TGACGATG--AACCCCGTACCGATCGTCCTCGTGCCGAATTNTGGCCTCGG--------- 598
****** * * * * * * * * **
consensus_4516#0 GTCCTGGGAATGTATCGTCATCCCAAATCAACCGACTAGGAACCTGGGGCTAAGGACACT 1005
consensus_4516#1 ------------------------------------------------------------
consensus_4516#0 CATATGTGCCCGCCCTCANGGACTGGCCTTATAATCCCCGGGGAGGGGGTGGCTCTCTCA 1065
consensus_4516#1 ------------------------------------------------------------
consensus_4516#0 CCGCGGGGGGGGGGTTC 1082
consensus_4516#1 -----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||