cluster # 452

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Schistosoma mansoni
cluster # 452 cluster # 452 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_452#0 length = 541 sequences # 1

consensus_452#1 length = 419 sequences # 1

consensusID : consensus_452#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [AGTTTAGTGTTGAAAGTCAAGGTAGAAGGAATAGTAGGAATTGAAGAAGGAGATTGATTATGAATACAGTGGTCTTGAGTGCTGTTAGGGGTATGAGGGCGGTCATCACTTCCCGGTTGCCTACACCGTGGAAGGGTTCTTCTAGAGGTACTTGAAAAGGAAATTGGGGTAGAAGTGGTCTTAGTGACCTGGGAGCGTGACCGCATTGCCCAAAGGACAACTGCTTGAGGTCGGTCACACACGTCCTTTTTGTGGGTAATTTTTGTGTTACCTTCGTAGTTATTGGAACTTTACCGCCGGAGACGGACGTCCGTGTGCATTTTTAGGATCGACATTTTTTAACCCCACCCTTCCTTGTGAGAAGGCAGCATCGCTGTCATGCTGGTTGTCTGAAGGAAACACCTTACTGCCATCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTTGCTGCTTTTAGTCTCACCGCTCTTCAAACGACCTGCCTGGCATGGTAGGACCTTGAGGAACGATTGTTCCAGCCAGTA]

[+] EMBL CD097732             [AGTTTAGTGTTGAAAGTCAAGGTAGAAGGAATAGTAGGAATTGAAGAAGGAGATTGATTATGAATACAGTGGTCTTGAGTGCTGTTAGGGGTATGAGGGCGGTCATCACTTCCCGGTTGCCTACACCGTGGAAGGGTTCTTCTAGAGGTACTTGAAAAGGAAATTGGGGTAGAAGTGGTCTTAGTGACCTGGGAGCGTGACCGCATTGCCCAAAGGACAACTGCTTGAGGTCGGTCACACACGTCCTTTTTGTGGGTAATTTTTGTGTTACCTTCGTAGTTATTGGAACTTTACCGCCGGAGACGGACGTCCGTGTGCATTTTTAGGATCGACATTTTTTAACCCCACCCTTCCTTGTGAGAAGGCAGCATCGCTGTCATGCTGGTTGTCTGAAGGAAACACCTTACTGCCATCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTTGCTGCTTTTAGTCTCACCGCTCTTCAAACGACCTGCCTGGCATGGTAGGACCTTGAGGAACGATTGTTCCAGCCAGTA]




>consensus_452#0
AGTTTAGTGTTGAAAGTCAAGGTAGAAGGAATAGTAGGAATTGAAGAAGGAGATTGATTA
TGAATACAGTGGTCTTGAGTGCTGTTAGGGGTATGAGGGCGGTCATCACTTCCCGGTTGC
CTACACCGTGGAAGGGTTCTTCTAGAGGTACTTGAAAAGGAAATTGGGGTAGAAGTGGTC
TTAGTGACCTGGGAGCGTGACCGCATTGCCCAAAGGACAACTGCTTGAGGTCGGTCACAC
ACGTCCTTTTTGTGGGTAATTTTTGTGTTACCTTCGTAGTTATTGGAACTTTACCGCCGG
AGACGGACGTCCGTGTGCATTTTTAGGATCGACATTTTTTAACCCCACCCTTCCTTGTGA
GAAGGCAGCATCGCTGTCATGCTGGTTGTCTGAAGGAAACACCTTACTGCCATCACACCT
CTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTTGCTGCTTTTAGTCTCAC
CGCTCTTCAAACGACCTGCCTGGCATGGTAGGACCTTGAGGAACGATTGTTCCAGCCAGT
A

consensusID : consensus_452#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [TTTTAGTCATACCGCTCTTCAACCGACCTATCTGGCATGGTAGGACCTTGAGGAACGATTGTTCCAGACAGCATAGCTCGATTGGTTCATTACGATAGGTAAGCCCGACCACCACGTCATGGTAGCATCAACGGTCGGGATAGGAAGTTTATGCGGGAATGATCTACAAGAGACTAAAAACTCCAGCGGAACGAAACCTCCCTCCAAATCAATTCGGATTTCGAAAACGTCTTTTGATTACATATGCAATCATAGCAATCAGATATAATACAAGGTGAATTATATGCCAACCAAGAATGAATACTAACTTCCATTGACCTCACCAAAGCTTTCGACTTACTATTAAAAGAAACTGATTCTAGATACACTACAAAAACTGTCCTTCAAACAATATCAACCGAAACATCAACTAGCTATTA]

[+] EMBL CD188378             [TTTTAGTCATACCGCTCTTCAACCGACCTATCTGGCATGGTAGGACCTTGAGGAACGATTGTTCCAGACAGCATAGCTCGATTGGTTCATTACGATAGGTAAGCCCGACCACCACGTCATGGTAGCATCAACGGTCGGGATAGGAAGTTTATGCGGGAATGATCTACAAGAGACTAAAAACTCCAGCGGAACGAAACCTCCCTCCAAATCAATTCGGATTTCGAAAACGTCTTTTGATTACATATGCAATCATAGCAATCAGATATAATACAAGGTGAATTATATGCCAACCAAGAATGAATACTAACTTCCATTGACCTCACCAAAGCTTTCGACTTACTATTAAAAGAAACTGATTCTAGATACACTACAAAAACTGTCCTTCAAACAATATCAACCGAAACATCAACTAGCTATTA]




>consensus_452#1
TTTTAGTCATACCGCTCTTCAACCGACCTATCTGGCATGGTAGGACCTTGAGGAACGATT
GTTCCAGACAGCATAGCTCGATTGGTTCATTACGATAGGTAAGCCCGACCACCACGTCAT
GGTAGCATCAACGGTCGGGATAGGAAGTTTATGCGGGAATGATCTACAAGAGACTAAAAA
CTCCAGCGGAACGAAACCTCCCTCCAAATCAATTCGGATTTCGAAAACGTCTTTTGATTA
CATATGCAATCATAGCAATCAGATATAATACAAGGTGAATTATATGCCAACCAAGAATGA
ATACTAACTTCCATTGACCTCACCAAAGCTTTCGACTTACTATTAAAAGAAACTGATTCT
AGATACACTACAAAAACTGTCCTTCAAACAATATCAACCGAAACATCAACTAGCTATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_452#0      AGTTTAGTGTTGAAAGTCAAGGTAGAAGGAATAGTAGGAATTGAAGAAGGAGATTGATTA 60
consensus_452#1      ------------------------------------------------------------
                                                                                 

consensus_452#0      TGAATACAGTGGTCTTGAGTGCTGTTAGGGGTATGAGGGCGGTCATCACTTCCCGGTTG- 119
consensus_452#1      ---------------------------------TTTTAGTCAT-ACCGCTCTTCAACCGA 26
                                                      *    *   * * * **   *    * 

consensus_452#0      CCTACACCGTGGAAGGGTTCTTCTAGAGGTACTTGAAAAGGAAATTGGGGTAGAAGTGGT 179
consensus_452#1      CCTATCTGGCATGGTAGGACCTTGAGGAACGATTGTTCCAGACAGCATAGCTCGATTGGT 86
                     ****    *       *  * *  **      ***     ** *     *    * ****

consensus_452#0      CT-TAGTGACCTGGGAGCGTGACCGCATTGCCCAAAGGACAACTGCTTGAGGTCGGTCAC 238
consensus_452#1      TCATTACGATAGGTAAGCCCGACCACCACGTCATGGTAGCATCAAC----GGTCGGG-AT 141
                        *   **   *  ***  **** *   * *       ** *  *    ******  * 

consensus_452#0      ACACGTCCTTTTTGTGGGTAATTTTTGTGTTACCTTCGTAGTTATTGGAACTTTACCGCC 298
consensus_452#1      AGGAAGTTTATGCGGGAATGATCTACAAGAGACTAAAAACTCCAGCGGAACGAAACCTCC 201
                     *       * *  * *  * ** *    *  **          *  *****   *** **

consensus_452#0      GGAGACGGACGTCCGTGTGCATTTTTAGGATCGACATTTTTTAACCCCACCCTTCCTTGT 358
consensus_452#1      C----TCCAAATCAATTCGGATTTCGAAAA----CGTCTTTTGATTACATATGCAATCAT 253
                             *  **  *  * ****  *  *    * * **** *   **       *  *

consensus_452#0      GAGAAGGCAGCATCGCTGTCATGCTGGTTGTCTGAAGGAAACACCTTACTGCCATCACAC 418
consensus_452#1      -AGCAATCAGATATAATACAAGGTGAATTATATGCCAACCAAGAATGAATACTA----AC 308
                      ** *  ***      *   * *    ** * **      *    * * * * *    **

consensus_452#0      CTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTTGCTGCTTTTAGTCTC 478
consensus_452#1      TTCCATTGACCTCACCA-AAGCTTTCGACTTACTAT-TAAAAGAAACTGATTCTAGATAC 366
                      **  *  *     *   * *  **** ***   *  *        *** ** ***   *

consensus_452#0      ACCGCTCTTCAAACGACCTGCCTGGCATGGTAGGACCTTGAGGAACGATTGTTCCAGCCA 538
consensus_452#1      ACTAC-----AAAAACTGTCCTTCAAACAATATCAACCGAAACATCAA-----CTAGCTA 416
                     **  *     ***     * * *   *   **  * *   *  * * *     * *** *

consensus_452#0      GTA 541
consensus_452#1      TTA 419
                      **