cluster # 4521

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Schistosoma mansoni
cluster # 4521 cluster # 4521 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4521#0 length = 450 sequences # 1

consensus_4521#1 length = 248 sequences # 1
consensus_4521#2 length = 194 sequences # 1

consensusID : consensus_4521#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [TGGACAACAACTGCTAGGTACGGGAGAGATGCTGCTGTACTCCGGTCACGAAGAGGAAAGTGCTGCACACACTAAGGGAGTTGCTTTGATGCTGTCCAGAGAAGCACGAAACACACTTAAAGGATAGGAATCTCATGGATCCAGGATCATCAAAGCATCCTTCAAAACAAAGAAGCAGGGAATCACGATCAATGTTATCCACCCACGATGATATCAATGACGACGATAAAAATCAGTCCTACTCAGGTCTGCAGTCGATCATAGAGAATTACCCAAGAAAAGATCTCACCATCCTAATTAGAGATCTAAAGGTCAAAGTCAGTATGGACTACAACGGTTATGAATATATCATGGGACAACATGAACTAGGATAAAGGAATGAGAATGGTGAGAAATCTGGAAATCTGTGTGCATTCACCCTTCCTCTTTCTTCTGGTGATTGACTGGATT]

[+] EMBL CD153334             [TGGACAACAACTGCTAGGTACGGGAGAGATGCTGCTGTACTCCGGTCACGAAGAGGAAAGTGCTGCACACACTAAGGGAGTTGCTTTGATGCTGTCCAGAGAAGCACGAAACACACTTAAAGGATAGGAATCTCATGGATCCAGGATCATCAAAGCATCCTTCAAAACAAAGAAGCAGGGAATCACGATCAATGTTATCCACCCACGATGATATCAATGACGACGATAAAAATCAGTCCTACTCAGGTCTGCAGTCGATCATAGAGAATTACCCAAGAAAAGATCTCACCATCCTAATTAGAGATCTAAAGGTCAAAGTCAGTATGGACTACAACGGTTATGAATATATCATGGGACAACATGAACTAGGATAAAGGAATGAGAATGGTGAGAAATCTGGAAATCTGTGTGCATTCACCCTTCCTCTTTCTTCTGGTGATTGACTGGATT]




>consensus_4521#0
TGGACAACAACTGCTAGGTACGGGAGAGATGCTGCTGTACTCCGGTCACGAAGAGGAAAG
TGCTGCACACACTAAGGGAGTTGCTTTGATGCTGTCCAGAGAAGCACGAAACACACTTAA
AGGATAGGAATCTCATGGATCCAGGATCATCAAAGCATCCTTCAAAACAAAGAAGCAGGG
AATCACGATCAATGTTATCCACCCACGATGATATCAATGACGACGATAAAAATCAGTCCT
ACTCAGGTCTGCAGTCGATCATAGAGAATTACCCAAGAAAAGATCTCACCATCCTAATTA
GAGATCTAAAGGTCAAAGTCAGTATGGACTACAACGGTTATGAATATATCATGGGACAAC
ATGAACTAGGATAAAGGAATGAGAATGGTGAGAAATCTGGAAATCTGTGTGCATTCACCC
TTCCTCTTTCTTCTGGTGATTGACTGGATT

consensusID : consensus_4521#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence

                              [TCTTTAATAGAATCTGAATGACATTTTGAAGAGTGACATATATTTTTCTCCACAGAATCAACAGTAGAACTATGAAAGCAAACAGAAGTAAAATAATCATTTTAATTAAATATTAAACATATAAAANAGAAATGTATTTTTGCTATTAAATCTCATTGATGAAGTTGGAAGAGGAATAGGTGTTAAACAACTATTGTTTACTGTTTATCACAGATTATGAATCATAAGTAACAGGTAAATAATAAAGG]

[+] EMBL AA999314             [TCTTTAATAGAATCTGAATGACATTTTGAAGAGTGACATATATTTTTCTCCACAGAATCAACAGTAGAACTATGAAAGCAAACAGAAGTAAAATAATCATTTTAATTAAATATTAAACATATAAAANAGAAATGTATTTTTGCTATTAAATCTCATTGATGAAGTTGGAAGAGGAATAGGTGTTAAACAACTATTGTTTACTGTTTATCACAGATTATGAATCATAAGTAACAGGTAAATAATAAAGG]




>consensus_4521#1
TCTTTAATAGAATCTGAATGACATTTTGAAGAGTGACATATATTTTTCTCCACAGAATCA
ACAGTAGAACTATGAAAGCAAACAGAAGTAAAATAATCATTTTAATTAAATATTAAACAT
ATAAAANAGAAATGTATTTTTGCTATTAAATCTCATTGATGAAGTTGGAAGAGGAATAGG
TGTTAAACAACTATTGTTTACTGTTTATCACAGATTATGAATCATAAGTAACAGGTAAAT
AATAAAGG

consensusID : consensus_4521#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence

                              [GCAAGTGCACTTTGATTAGATCCTAGTTAATATACATTTATGCACTGTTCCATCCATGAGTCTACTGTAAGGACGGCCCGTCGGTAGACTCTCGGAAGCCCTAAGGAGCCCAGGAAGAGCCGCAGACATTCCATCCAATCACGGCTAGGGGAATGTTCTAGAAATGCCAACGTGGAGCTTCTCCATTGGATGGA]

[+] EMBL CD116850             [GCAAGTGCACTTTGATTAGATCCTAGTTAATATACATTTATGCACTGTTCCATCCATGAGTCTACTGTAAGGACGGCCCGTCGGTAGACTCTCGGAAGCCCTAAGGAGCCCAGGAAGAGCCGCAGACATTCCATCCAATCACGGCTAGGGGAATGTTCTAGAAATGCCAACGTGGAGCTTCTCCATTGGATGGA]




>consensus_4521#2
GCAAGTGCACTTTGATTAGATCCTAGTTAATATACATTTATGCACTGTTCCATCCATGAG
TCTACTGTAAGGACGGCCCGTCGGTAGACTCTCGGAAGCCCTAAGGAGCCCAGGAAGAGC
CGCAGACATTCCATCCAATCACGGCTAGGGGAATGTTCTAGAAATGCCAACGTGGAGCTT
CTCCATTGGATGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4521#0      TGGACAACAACTGCTAGGTACGGGAGAGATGCTGCTGTACTCCGGTCACGAAGAGGAAAG 60
consensus_4521#1      ------------------------------------------------------------
consensus_4521#2      ------------------------------------------------------------
                                                                                  

consensus_4521#0      TGCTGCACACACTAAGGGAGTTGCTTTGATGCTGTCCAGAGAAGCACGAAACACACTTAA 120
consensus_4521#1      ------------------------------------------------------------
consensus_4521#2      ------------------------------------------------------------
                                                                                  

consensus_4521#0      AGGATAGGAATCTCATGGATCCAGGATCATCAAAGCATCCTTCAAAACAAAGAAGCAGGG 180
consensus_4521#1      ------------------------------------------------------------
consensus_4521#2      ------------------------------------------------------------
                                                                                  

consensus_4521#0      AATCACGATCAATGTTATCCACCCACGATGATATCAATGACGACGATAAAAATCAGTCCT 240
consensus_4521#1      ----------TCTTTAATAGAATCTGAATGACATTTTGAAGAGTGACATATATTTTTCTC 50
consensus_4521#2      -------------GCAAGTGCACTTTGATTAGATCCTAGTTAAT-ATACATTTATGCACT 46
                                      *          ** * **           * * *  *       

consensus_4521#0      ACTCAGGTCTGCAGTCGATCATAGAGAATTACCCAAGAAAAGATCTCACCA-TCCTAATT 299
consensus_4521#1      CACAGAATCAACAGTAGAACTATGAAAGCAAAC--AGAAGTAAAATAATCA-TTTTAATT 107
consensus_4521#2      GTTCCATCCATGAGTCTACTGTAAGGACGGCCCGTCGGTAGACTCTCGGAAGCCCTAAGG 106
                              *   ***  *        *     *   *        *    *    ***  

consensus_4521#0      AGAGATCTAAAGGTCAAAGTCAGTATGGACTACAACGGTTATGAATATATCATGGGACAA 359
consensus_4521#1      AAATATTAAACATATAAAANAGAAATGTATTTTTGCTATTA----AATCTCATTG----- 158
consensus_4521#2      AGCCCAGGAAGAGCCGCAGACATTCCATCCAATCACGGCTAGGGGAATGTTCTAGAA--A 164
                      *       **       *                 *   **     ** *  * *     

consensus_4521#0      CATGAACTAGGATAAAGGAATGAGAATGGTGAGAAATCTGGAAATCTGTGTG-CATTCAC 418
consensus_4521#1      -ATGAAGTTGGA-AGAGGAATAGGTGTTA-AACAACTATTGTTTACTGTTTATCACAGAT 215
consensus_4521#2      TGCCAACGTGGA-----GCTTCTCCATTGGATGGA------------------------- 194
                          **   ***     *  *     *       *                         

consensus_4521#0      CCTTCCTCTTTCTT--CTGGTGATTGACTGGATT 450
consensus_4521#1      TATGAATCATAAGTAACAGGTAAATAATAAAGG- 248
consensus_4521#2      ----------------------------------