These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [TGGACAACAACTGCTAGGTACGGGAGAGATGCTGCTGTACTCCGGTCACGAAGAGGAAAGTGCTGCACACACTAAGGGAGTTGCTTTGATGCTGTCCAGAGAAGCACGAAACACACTTAAAGGATAGGAATCTCATGGATCCAGGATCATCAAAGCATCCTTCAAAACAAAGAAGCAGGGAATCACGATCAATGTTATCCACCCACGATGATATCAATGACGACGATAAAAATCAGTCCTACTCAGGTCTGCAGTCGATCATAGAGAATTACCCAAGAAAAGATCTCACCATCCTAATTAGAGATCTAAAGGTCAAAGTCAGTATGGACTACAACGGTTATGAATATATCATGGGACAACATGAACTAGGATAAAGGAATGAGAATGGTGAGAAATCTGGAAATCTGTGTGCATTCACCCTTCCTCTTTCTTCTGGTGATTGACTGGATT] [+] EMBL CD153334 [TGGACAACAACTGCTAGGTACGGGAGAGATGCTGCTGTACTCCGGTCACGAAGAGGAAAGTGCTGCACACACTAAGGGAGTTGCTTTGATGCTGTCCAGAGAAGCACGAAACACACTTAAAGGATAGGAATCTCATGGATCCAGGATCATCAAAGCATCCTTCAAAACAAAGAAGCAGGGAATCACGATCAATGTTATCCACCCACGATGATATCAATGACGACGATAAAAATCAGTCCTACTCAGGTCTGCAGTCGATCATAGAGAATTACCCAAGAAAAGATCTCACCATCCTAATTAGAGATCTAAAGGTCAAAGTCAGTATGGACTACAACGGTTATGAATATATCATGGGACAACATGAACTAGGATAAAGGAATGAGAATGGTGAGAAATCTGGAAATCTGTGTGCATTCACCCTTCCTCTTTCTTCTGGTGATTGACTGGATT] consensusID : consensus_4521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence [TCTTTAATAGAATCTGAATGACATTTTGAAGAGTGACATATATTTTTCTCCACAGAATCAACAGTAGAACTATGAAAGCAAACAGAAGTAAAATAATCATTTTAATTAAATATTAAACATATAAAANAGAAATGTATTTTTGCTATTAAATCTCATTGATGAAGTTGGAAGAGGAATAGGTGTTAAACAACTATTGTTTACTGTTTATCACAGATTATGAATCATAAGTAACAGGTAAATAATAAAGG] [+] EMBL AA999314 [TCTTTAATAGAATCTGAATGACATTTTGAAGAGTGACATATATTTTTCTCCACAGAATCAACAGTAGAACTATGAAAGCAAACAGAAGTAAAATAATCATTTTAATTAAATATTAAACATATAAAANAGAAATGTATTTTTGCTATTAAATCTCATTGATGAAGTTGGAAGAGGAATAGGTGTTAAACAACTATTGTTTACTGTTTATCACAGATTATGAATCATAAGTAACAGGTAAATAATAAAGG] consensusID : consensus_4521#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [GCAAGTGCACTTTGATTAGATCCTAGTTAATATACATTTATGCACTGTTCCATCCATGAGTCTACTGTAAGGACGGCCCGTCGGTAGACTCTCGGAAGCCCTAAGGAGCCCAGGAAGAGCCGCAGACATTCCATCCAATCACGGCTAGGGGAATGTTCTAGAAATGCCAACGTGGAGCTTCTCCATTGGATGGA] [+] EMBL CD116850 [GCAAGTGCACTTTGATTAGATCCTAGTTAATATACATTTATGCACTGTTCCATCCATGAGTCTACTGTAAGGACGGCCCGTCGGTAGACTCTCGGAAGCCCTAAGGAGCCCAGGAAGAGCCGCAGACATTCCATCCAATCACGGCTAGGGGAATGTTCTAGAAATGCCAACGTGGAGCTTCTCCATTGGATGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4521#0 TGGACAACAACTGCTAGGTACGGGAGAGATGCTGCTGTACTCCGGTCACGAAGAGGAAAG 60 consensus_4521#1 ------------------------------------------------------------ consensus_4521#2 ------------------------------------------------------------ consensus_4521#0 TGCTGCACACACTAAGGGAGTTGCTTTGATGCTGTCCAGAGAAGCACGAAACACACTTAA 120 consensus_4521#1 ------------------------------------------------------------ consensus_4521#2 ------------------------------------------------------------ consensus_4521#0 AGGATAGGAATCTCATGGATCCAGGATCATCAAAGCATCCTTCAAAACAAAGAAGCAGGG 180 consensus_4521#1 ------------------------------------------------------------ consensus_4521#2 ------------------------------------------------------------ consensus_4521#0 AATCACGATCAATGTTATCCACCCACGATGATATCAATGACGACGATAAAAATCAGTCCT 240 consensus_4521#1 ----------TCTTTAATAGAATCTGAATGACATTTTGAAGAGTGACATATATTTTTCTC 50 consensus_4521#2 -------------GCAAGTGCACTTTGATTAGATCCTAGTTAAT-ATACATTTATGCACT 46 * ** * ** * * * * consensus_4521#0 ACTCAGGTCTGCAGTCGATCATAGAGAATTACCCAAGAAAAGATCTCACCA-TCCTAATT 299 consensus_4521#1 CACAGAATCAACAGTAGAACTATGAAAGCAAAC--AGAAGTAAAATAATCA-TTTTAATT 107 consensus_4521#2 GTTCCATCCATGAGTCTACTGTAAGGACGGCCCGTCGGTAGACTCTCGGAAGCCCTAAGG 106 * *** * * * * * * *** consensus_4521#0 AGAGATCTAAAGGTCAAAGTCAGTATGGACTACAACGGTTATGAATATATCATGGGACAA 359 consensus_4521#1 AAATATTAAACATATAAAANAGAAATGTATTTTTGCTATTA----AATCTCATTG----- 158 consensus_4521#2 AGCCCAGGAAGAGCCGCAGACATTCCATCCAATCACGGCTAGGGGAATGTTCTAGAA--A 164 * ** * * ** ** * * * consensus_4521#0 CATGAACTAGGATAAAGGAATGAGAATGGTGAGAAATCTGGAAATCTGTGTG-CATTCAC 418 consensus_4521#1 -ATGAAGTTGGA-AGAGGAATAGGTGTTA-AACAACTATTGTTTACTGTTTATCACAGAT 215 consensus_4521#2 TGCCAACGTGGA-----GCTTCTCCATTGGATGGA------------------------- 194 ** *** * * * * consensus_4521#0 CCTTCCTCTTTCTT--CTGGTGATTGACTGGATT 450 consensus_4521#1 TATGAATCATAAGTAACAGGTAAATAATAAAGG- 248 consensus_4521#2 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||