These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 726 fasta sequence [AATGAAAACCTGTGTACCAAATGTTGGATCATGACTGACATTGACAATTCTGAACATCGGGAAATCTCCCACAACATCTCCATCTCTGTGTTTCCCATATGAGTATGCTGCTAAGGTTGCAGTTGTGCTCATGGAACCAATATCAAAAAACACGTGATATTGAGGTGTTTCGTTGAAGCTTTTAAAACGGAGCAAACCGAAATTTAGAGCCACTGCAGAATTATCGTTAATTATTTGAAGAACGTTTAAGCCAGCTATTTCAGACACTTGTATCAAGCGACGCCTTTCAGCCTGACCAAAATGGCTAGGTACAGTCAACACGCAAGTCTTGATAATAGAACCAGCATAAAGTTCAGCGTAATTGTGGGCATATTCAAAGAGCATAGCAACCAGTTCATCAACCGAAAATACCACACCATCTTTTAGAGTGAAAAATAGTTGTCCAGATGTGGCATCATAAGACAAATTGTGGTAAGGATAACGTTCCTGAAAGAGTTTAACCATTGGATGATCTATAGACTTCCCAAGAAGAGACGGAATGGACTGGAATACGTTTTCGGGACTTTTAGAAGCCAAATTGACTGCGAGACTCCCGAATAACCTTTCATTGTTTTTGAAGCCGATTGCAGTTGAAGTTTTTCTTTTGGAATCAGGTGCAACGGCGATCTCCATGGGTTTTCCAGGCAAAACCACCGCAACTTTCATAAACTCGGTCCCTAAGTCTAT] [-] EMBL CD125203 [AATGAAAACCTGTGTACCAAATGTTGGATCATGACTGACATTGACAATTCTGAACATCGGGAAATCTCCCACAACATCTCCATCTCTGTGTTTCCCATATGAGTATGCTGCTAAGGTTGCAGTTGTGCTCATGGAACCAATATCAAAAAACACGTGATATTGAGGTGTTTCGTTGAAGCTTTTAAAACGGAGCAAACCGAAATTTAGAGCCACTGCAGAATTATCGTTAATTATTTGAAGAACGTTTAAGCCAGCTATTTCAGACACTTGTATCAAGCGACGCCTTTCAGCCTGACCAAAATGGCTAGGTACAGTCAACACGCAAGTCTTGATAATAGAACCAGCATAAAGTTCA ] [+] EMBL CD067892 [ CTGTGTTTCCCATATGAGTATGCTGCTAAGGTTGCAGTTGTGCTCATGGAACCAATATCAAAAAACACGTAATATTGAGGTGTTTCGTTGAAGCTTTTAAAACGGAGCAAACCGAAATTTAGAGCCACTGCAGAATTATCGTTAATTATTTGAAGAACGTTTAAGCCAGCTATTTCAGACACTTGTATCAAGCGACGCCTTTCAGCCTGACCAAAATGGCTAGGTACAGTCAACACGCAAGTCTTGATAATAGAACCAGCATAAAGTTCAGCGTAATTGTGGGCATATTCAAAGAGCATAGCAACCAGTTCATCAACCGAAAATACCACACCATCTTTTAGAGTGAAAAATAGTTGTCCAGATGTGGCATCATAAGACAAATTGTGGTAAGGATAACGTTCCTGAAAGAGTTTAACCATTGGATGATCTATAGACTTCCCAAGAAGAGACGGAATGGACTGGAATACGTTTTCGGGACTTTTAGAAGCCAAATTGACTGCGAGACTCCCGAATAACCTTTCATTGTTTTTGAAGCCGATTGCAGTTGAAGTTTTTCTTTTGGAATCAGGTGCAACGGCGATCTCCATGGGTTTTCCAGGCAAAACCACCGCAACTTTCATAAACTCGGTCCCTAAGTCTAT] consensusID : consensus_4524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence [GGNAATTACGATTGGAGTAGCACCNNCTGTCCTGGGAAAAACTTCAACTGCAATCGGCTTCAAAAACAATGAAAGGTTATTCGGGAGTCTCGCAGTCAATTTGGCTTCTAAAAGTCCCGAAACGTATTCAGTCATA] [+] EMBL CD183459 [GGNAATTACGATTGGAGTAGCACCNNCTGTCCTGGGAAAAACTTCAACTGCAATCGGCTTCAAAAACAATGAAAGGTTATTCGGGAGTCTCGCAGTCAATTTGGCTTCTAAAAGTCCCGAAACGTATTCAGTCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4524#0 AATGAAAACCTGTGTACCAAATGTTGGATCATGACTGACATTGACAATTCTGAACATCGG 60 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 GAAATCTCCCACAACATCTCCATCTCTGTGTTTCCCATATGAGTATGCTGCTAAGGTTGC 120 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 AGTTGTGCTCATGGAACCAATATCAAAAAACACGTGATATTGAGGTGTTTCGTTGAAGCT 180 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 TTTAAAACGGAGCAAACCGAAATTTAGAGCCACTGCAGAATTATCGTTAATTATTTGAAG 240 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 AACGTTTAAGCCAGCTATTTCAGACACTTGTATCAAGCGACGCCTTTCAGCCTGACCAAA 300 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 ATGGCTAGGTACAGTCAACACGCAAGTCTTGATAATAGAACCAGCATAAAGTTCAGCGTA 360 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 ATTGTGGGCATATTCAAAGAGCATAGCAACCAGTTCATCAACCGAAAATACCACACCATC 420 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 TTTTAGAGTGAAAAATAGTTGTCCAGATGTGGCATCATAAGACAAATTGTGGTAAGGATA 480 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 ACGTTCCTGAAAGAGTTTAACCATTGGATGATCTATAGACTTCCCAAGAAGAGACGGAAT 540 consensus_4524#1 ------------GGNAATTACGATTGGAGTAGC-ACCNNCTGTCCTGGGAAAAAC---TT 44 * * ** ****** * * * ** ** * * * ** * consensus_4524#0 GGACTGGAATACGTTTTCGGGACTTTTAGAAGCCAAATTGACTGCGAGACTCCCGAATAA 600 consensus_4524#1 CAACTGCAAT-CGGCTTCAAAAACAATGAAAGGTTATTCGGGAGTCTCGCAGTCAATTTG 103 **** *** ** *** * * *** * * * * * * * * consensus_4524#0 CCTTTCATTGTTTTTGAAGCCGATTGCAGTTGAAGTTTTTCTTTTGGAATCAGGTGCAAC 660 consensus_4524#1 GCTTCTAAAAGTCCCGAAACGTATT-CAGTCATA-------------------------- 136 *** * * *** * *** **** * consensus_4524#0 GGCGATCTCCATGGGTTTTCCAGGCAAAACCACCGCAACTTTCATAAACTCGGTCCCTAA 720 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 GTCTAT 726 consensus_4524#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||