cluster # 4524

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Schistosoma mansoni
cluster # 4524 cluster # 4524 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4524#0 length = 726 sequences # 2

consensus_4524#1 length = 136 sequences # 1

consensusID : consensus_4524#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 726
fasta sequence

                              [AATGAAAACCTGTGTACCAAATGTTGGATCATGACTGACATTGACAATTCTGAACATCGGGAAATCTCCCACAACATCTCCATCTCTGTGTTTCCCATATGAGTATGCTGCTAAGGTTGCAGTTGTGCTCATGGAACCAATATCAAAAAACACGTGATATTGAGGTGTTTCGTTGAAGCTTTTAAAACGGAGCAAACCGAAATTTAGAGCCACTGCAGAATTATCGTTAATTATTTGAAGAACGTTTAAGCCAGCTATTTCAGACACTTGTATCAAGCGACGCCTTTCAGCCTGACCAAAATGGCTAGGTACAGTCAACACGCAAGTCTTGATAATAGAACCAGCATAAAGTTCAGCGTAATTGTGGGCATATTCAAAGAGCATAGCAACCAGTTCATCAACCGAAAATACCACACCATCTTTTAGAGTGAAAAATAGTTGTCCAGATGTGGCATCATAAGACAAATTGTGGTAAGGATAACGTTCCTGAAAGAGTTTAACCATTGGATGATCTATAGACTTCCCAAGAAGAGACGGAATGGACTGGAATACGTTTTCGGGACTTTTAGAAGCCAAATTGACTGCGAGACTCCCGAATAACCTTTCATTGTTTTTGAAGCCGATTGCAGTTGAAGTTTTTCTTTTGGAATCAGGTGCAACGGCGATCTCCATGGGTTTTCCAGGCAAAACCACCGCAACTTTCATAAACTCGGTCCCTAAGTCTAT]

[-] EMBL CD125203             [AATGAAAACCTGTGTACCAAATGTTGGATCATGACTGACATTGACAATTCTGAACATCGGGAAATCTCCCACAACATCTCCATCTCTGTGTTTCCCATATGAGTATGCTGCTAAGGTTGCAGTTGTGCTCATGGAACCAATATCAAAAAACACGTGATATTGAGGTGTTTCGTTGAAGCTTTTAAAACGGAGCAAACCGAAATTTAGAGCCACTGCAGAATTATCGTTAATTATTTGAAGAACGTTTAAGCCAGCTATTTCAGACACTTGTATCAAGCGACGCCTTTCAGCCTGACCAAAATGGCTAGGTACAGTCAACACGCAAGTCTTGATAATAGAACCAGCATAAAGTTCA                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD067892             [                                                                                     CTGTGTTTCCCATATGAGTATGCTGCTAAGGTTGCAGTTGTGCTCATGGAACCAATATCAAAAAACACGTAATATTGAGGTGTTTCGTTGAAGCTTTTAAAACGGAGCAAACCGAAATTTAGAGCCACTGCAGAATTATCGTTAATTATTTGAAGAACGTTTAAGCCAGCTATTTCAGACACTTGTATCAAGCGACGCCTTTCAGCCTGACCAAAATGGCTAGGTACAGTCAACACGCAAGTCTTGATAATAGAACCAGCATAAAGTTCAGCGTAATTGTGGGCATATTCAAAGAGCATAGCAACCAGTTCATCAACCGAAAATACCACACCATCTTTTAGAGTGAAAAATAGTTGTCCAGATGTGGCATCATAAGACAAATTGTGGTAAGGATAACGTTCCTGAAAGAGTTTAACCATTGGATGATCTATAGACTTCCCAAGAAGAGACGGAATGGACTGGAATACGTTTTCGGGACTTTTAGAAGCCAAATTGACTGCGAGACTCCCGAATAACCTTTCATTGTTTTTGAAGCCGATTGCAGTTGAAGTTTTTCTTTTGGAATCAGGTGCAACGGCGATCTCCATGGGTTTTCCAGGCAAAACCACCGCAACTTTCATAAACTCGGTCCCTAAGTCTAT]




>consensus_4524#0
AATGAAAACCTGTGTACCAAATGTTGGATCATGACTGACATTGACAATTCTGAACATCGG
GAAATCTCCCACAACATCTCCATCTCTGTGTTTCCCATATGAGTATGCTGCTAAGGTTGC
AGTTGTGCTCATGGAACCAATATCAAAAAACACGTGATATTGAGGTGTTTCGTTGAAGCT
TTTAAAACGGAGCAAACCGAAATTTAGAGCCACTGCAGAATTATCGTTAATTATTTGAAG
AACGTTTAAGCCAGCTATTTCAGACACTTGTATCAAGCGACGCCTTTCAGCCTGACCAAA
ATGGCTAGGTACAGTCAACACGCAAGTCTTGATAATAGAACCAGCATAAAGTTCAGCGTA
ATTGTGGGCATATTCAAAGAGCATAGCAACCAGTTCATCAACCGAAAATACCACACCATC
TTTTAGAGTGAAAAATAGTTGTCCAGATGTGGCATCATAAGACAAATTGTGGTAAGGATA
ACGTTCCTGAAAGAGTTTAACCATTGGATGATCTATAGACTTCCCAAGAAGAGACGGAAT
GGACTGGAATACGTTTTCGGGACTTTTAGAAGCCAAATTGACTGCGAGACTCCCGAATAA
CCTTTCATTGTTTTTGAAGCCGATTGCAGTTGAAGTTTTTCTTTTGGAATCAGGTGCAAC
GGCGATCTCCATGGGTTTTCCAGGCAAAACCACCGCAACTTTCATAAACTCGGTCCCTAA
GTCTAT

consensusID : consensus_4524#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 136
fasta sequence

                              [GGNAATTACGATTGGAGTAGCACCNNCTGTCCTGGGAAAAACTTCAACTGCAATCGGCTTCAAAAACAATGAAAGGTTATTCGGGAGTCTCGCAGTCAATTTGGCTTCTAAAAGTCCCGAAACGTATTCAGTCATA]

[+] EMBL CD183459             [GGNAATTACGATTGGAGTAGCACCNNCTGTCCTGGGAAAAACTTCAACTGCAATCGGCTTCAAAAACAATGAAAGGTTATTCGGGAGTCTCGCAGTCAATTTGGCTTCTAAAAGTCCCGAAACGTATTCAGTCATA]




>consensus_4524#1
GGNAATTACGATTGGAGTAGCACCNNCTGTCCTGGGAAAAACTTCAACTGCAATCGGCTT
CAAAAACAATGAAAGGTTATTCGGGAGTCTCGCAGTCAATTTGGCTTCTAAAAGTCCCGA
AACGTATTCAGTCATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4524#0      AATGAAAACCTGTGTACCAAATGTTGGATCATGACTGACATTGACAATTCTGAACATCGG 60
consensus_4524#1      ------------------------------------------------------------
                                                                                  

consensus_4524#0      GAAATCTCCCACAACATCTCCATCTCTGTGTTTCCCATATGAGTATGCTGCTAAGGTTGC 120
consensus_4524#1      ------------------------------------------------------------
                                                                                  

consensus_4524#0      AGTTGTGCTCATGGAACCAATATCAAAAAACACGTGATATTGAGGTGTTTCGTTGAAGCT 180
consensus_4524#1      ------------------------------------------------------------
                                                                                  

consensus_4524#0      TTTAAAACGGAGCAAACCGAAATTTAGAGCCACTGCAGAATTATCGTTAATTATTTGAAG 240
consensus_4524#1      ------------------------------------------------------------
                                                                                  

consensus_4524#0      AACGTTTAAGCCAGCTATTTCAGACACTTGTATCAAGCGACGCCTTTCAGCCTGACCAAA 300
consensus_4524#1      ------------------------------------------------------------
                                                                                  

consensus_4524#0      ATGGCTAGGTACAGTCAACACGCAAGTCTTGATAATAGAACCAGCATAAAGTTCAGCGTA 360
consensus_4524#1      ------------------------------------------------------------
                                                                                  

consensus_4524#0      ATTGTGGGCATATTCAAAGAGCATAGCAACCAGTTCATCAACCGAAAATACCACACCATC 420
consensus_4524#1      ------------------------------------------------------------
                                                                                  

consensus_4524#0      TTTTAGAGTGAAAAATAGTTGTCCAGATGTGGCATCATAAGACAAATTGTGGTAAGGATA 480
consensus_4524#1      ------------------------------------------------------------
                                                                                  

consensus_4524#0      ACGTTCCTGAAAGAGTTTAACCATTGGATGATCTATAGACTTCCCAAGAAGAGACGGAAT 540
consensus_4524#1      ------------GGNAATTACGATTGGAGTAGC-ACCNNCTGTCCTGGGAAAAAC---TT 44
                                  *    * ** ******  * * *    **  **  * * * **    *

consensus_4524#0      GGACTGGAATACGTTTTCGGGACTTTTAGAAGCCAAATTGACTGCGAGACTCCCGAATAA 600
consensus_4524#1      CAACTGCAAT-CGGCTTCAAAAACAATGAAAGGTTATTCGGGAGTCTCGCAGTCAATTTG 103
                        **** *** **  ***   *    *  ***   * * *   *     *   * * *  

consensus_4524#0      CCTTTCATTGTTTTTGAAGCCGATTGCAGTTGAAGTTTTTCTTTTGGAATCAGGTGCAAC 660
consensus_4524#1      GCTTCTAAAAGTCCCGAAACGTATT-CAGTCATA-------------------------- 136
                       ***  *    *   *** *  *** ****   *                          

consensus_4524#0      GGCGATCTCCATGGGTTTTCCAGGCAAAACCACCGCAACTTTCATAAACTCGGTCCCTAA 720
consensus_4524#1      ------------------------------------------------------------
                                                                                  

consensus_4524#0      GTCTAT 726
consensus_4524#1      ------