cluster # 4530

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Schistosoma mansoni
cluster # 4530 cluster # 4530 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4530#0 length = 586 sequences # 1

consensus_4530#1 length = 571 sequences # 1
consensus_4530#2 length = 440 sequences # 1

consensusID : consensus_4530#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [CCATTGAAAATGCACTTCTACCTACTTTAATTACTTATTTAGAAAATCATGAAGAATCAGAGAGTGGAGATATTGAAGCATCCTTGAAAGTATTTGGTGTGTTAATCAGTCCATCAGAATTTGGAATTAGTTCCAGTTTGATTCAACGAGTATTTCCAGCTGTTGTACATATCGCTATCACAAGTACAGATTCTGTAGTGATTTCAGAATGCTGTGATGTGATACGCTGTTATCTAGCAGCCGGTTCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGGTACATACTCCATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATACAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGGTCAACAGGCTAAAGTACTGATCGATGTACCAATTATTGGTAGTATGTACAAATTGTTATTANACGAATTAGACCCAGAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGA]

[+] EMBL CD154244             [CCATTGAAAATGCACTTCTACCTACTTTAATTACTTATTTAGAAAATCATGAAGAATCAGAGAGTGGAGATATTGAAGCATCCTTGAAAGTATTTGGTGTGTTAATCAGTCCATCAGAATTTGGAATTAGTTCCAGTTTGATTCAACGAGTATTTCCAGCTGTTGTACATATCGCTATCACAAGTACAGATTCTGTAGTGATTTCAGAATGCTGTGATGTGATACGCTGTTATCTAGCAGCCGGTTCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGGTACATACTCCATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATACAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGGTCAACAGGCTAAAGTACTGATCGATGTACCAATTATTGGTAGTATGTACAAATTGTTATTANACGAATTAGACCCAGAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGA]




>consensus_4530#0
CCATTGAAAATGCACTTCTACCTACTTTAATTACTTATTTAGAAAATCATGAAGAATCAG
AGAGTGGAGATATTGAAGCATCCTTGAAAGTATTTGGTGTGTTAATCAGTCCATCAGAAT
TTGGAATTAGTTCCAGTTTGATTCAACGAGTATTTCCAGCTGTTGTACATATCGCTATCA
CAAGTACAGATTCTGTAGTGATTTCAGAATGCTGTGATGTGATACGCTGTTATCTAGCAG
CCGGTTCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGGTACA
TACTCCATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAG
CTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATA
CAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGGTCAACAGGCTA
AAGTACTGATCGATGTACCAATTATTGGTAGTATGTACAAATTGTTATTANACGAATTAG
ACCCAGAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGA

consensusID : consensus_4530#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [CGGTTCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGGTACATACTCCATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATACAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGGTAATAATCACAAACAATCTTCACAGTTAGTATATAATGATCAACAAAAGGGTATGCATGGAGCCAGACAAAGCTTACTGTTTGTCATAATCTTGTTGTTTCGTATACGAACTAAATTGGCTATTGATTTCTTGTCAACTATACCAGACTTATCTGGAAAGCCTATACTACAAGAAATATTATCAATATGGTGTAATTGTCAACCGTATTATTTTTCACGTTATGAAATTCAAGTTAGTACCATGGCATTGGCTAATTTGATACTGCACACAATCAATACAAAAGATGCACGTATTATGCAAATAACACTTCAAGAAGAAATGGACAATAATGATTCTATTCAA]

[+] EMBL CD153426             [CGGTTCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGGTACATACTCCATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATACAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGGTAATAATCACAAACAATCTTCACAGTTAGTATATAATGATCAACAAAAGGGTATGCATGGAGCCAGACAAAGCTTACTGTTTGTCATAATCTTGTTGTTTCGTATACGAACTAAATTGGCTATTGATTTCTTGTCAACTATACCAGACTTATCTGGAAAGCCTATACTACAAGAAATATTATCAATATGGTGTAATTGTCAACCGTATTATTTTTCACGTTATGAAATTCAAGTTAGTACCATGGCATTGGCTAATTTGATACTGCACACAATCAATACAAAAGATGCACGTATTATGCAAATAACACTTCAAGAAGAAATGGACAATAATGATTCTATTCAA]




>consensus_4530#1
CGGTTCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGGTACAT
ACTCCATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAGC
TGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATAC
AGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGGTAATAATCACAA
ACAATCTTCACAGTTAGTATATAATGATCAACAAAAGGGTATGCATGGAGCCAGACAAAG
CTTACTGTTTGTCATAATCTTGTTGTTTCGTATACGAACTAAATTGGCTATTGATTTCTT
GTCAACTATACCAGACTTATCTGGAAAGCCTATACTACAAGAAATATTATCAATATGGTG
TAATTGTCAACCGTATTATTTTTCACGTTATGAAATTCAAGTTAGTACCATGGCATTGGC
TAATTTGATACTGCACACAATCAATACAAAAGATGCACGTATTATGCAAATAACACTTCA
AGAAGAAATGGACAATAATGATTCTATTCAA

consensusID : consensus_4530#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [GGTACATACTCCATGTACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATACAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGTACCATGGCATTGGCTAATTTGATACTGCACACAATCAATACAAAAGATGCACGTATTGTGCAAATAACACTTCAAGAAGAAATGGACAATAATGATTCTATTCAAACCAGATCGAAATCTAGCTAAAGTACTGATCGATGTACCAATTATTGTTAGTATGTACAAATTGTTATTAAACGAATTAGACAAGAAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGACAGTGAATTCGACGACAATGATGATGATGATGATG]

[-] EMBL CD121468             [GGTACATACTCCATGTACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATACAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGTACCATGGCATTGGCTAATTTGATACTGCACACAATCAATACAAAAGATGCACGTATTGTGCAAATAACACTTCAAGAAGAAATGGACAATAATGATTCTATTCAAACCAGATCGAAATCTAGCTAAAGTACTGATCGATGTACCAATTATTGTTAGTATGTACAAATTGTTATTAAACGAATTAGACAAGAAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGACAGTGAATTCGACGACAATGATGATGATGATGATG]




>consensus_4530#2
GGTACATACTCCATGTACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTAC
ACCAGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGA
AAATACAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGTACCATG
GCATTGGCTAATTTGATACTGCACACAATCAATACAAAAGATGCACGTATTGTGCAAATA
ACACTTCAAGAAGAAATGGACAATAATGATTCTATTCAAACCAGATCGAAATCTAGCTAA
AGTACTGATCGATGTACCAATTATTGTTAGTATGTACAAATTGTTATTAAACGAATTAGA
CAAGAAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGACAGTGAATTCGACGA
CAATGATGATGATGATGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4530#0      CCATTGAAAATGCACTTCTACCTACTTTAATTACTTATTTAGAAAATCATGAAGAATCAG 60
consensus_4530#2      ------------------------------------------------------------
consensus_4530#1      ------------------------------------------------------------
                                                                                  

consensus_4530#0      AGAGTGGAGATATTGAAGCATCCTTGAAAGTATTTGGTGTGTTAATCAGTCCATCAGAAT 120
consensus_4530#2      ------------------------------------------------------------
consensus_4530#1      --------------------------------------------------------CGGT 4
                                                                                  

consensus_4530#0      TTGGAATTAGTTCCAGTTTGATTCAACGAGTATTTCCAGCTGTTGTACATATCGCTATCA 180
consensus_4530#2      -------------------------------------------------GGTACATACTC 11
consensus_4530#1      TCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGGTACATACTC 64
                                                                         *   **   

consensus_4530#0      CAAGTA-CAGATTCTGTAGTGATTTCAGAATGCTGTGATGTGATACGCTGTTATCTAGCA 239
consensus_4530#2      CATGTA-CTTCTCGTTTACTGGATCCCTCGAACCCAGTTG-AATGGGCTAC--ACCAGCT 67
consensus_4530#1      CATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTG-AATGGGCTAC--ACCAGCT 121
                      ** *** *   *  * ** **  * *      *   * **  **  ***     * *** 

consensus_4530#0      GCCGGTTCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGG-TA 298
consensus_4530#2      GGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCT--CAGCAGTTGAGAGAAAATA 125
consensus_4530#1      GGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCT--CAGCAGTTGAGAGAAAATA 179
                      *     *   *  *   * **  *   **   *****    **  * * ***      **

consensus_4530#0      CATACTCCATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACC 358
consensus_4530#2      CAGATTTGTTATTACGT--GGTGTACTAGCTCGTCTGTGTACA-TTAATAGTACCATGGC 182
consensus_4530#1      CAGATTTGTTATTACGT--GGTGTACTAGCTCGTCTGTGTACA-TTAATAGGTAATAATC 236
                      ** * *   * * ** *   ** **** * **    *    ** ** *  *        *

consensus_4530#0      AGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAA 418
consensus_4530#2      A-TTGGCTAATTTG---ATACTGCACACAATCAATACAAAAGATGCACGTATTGTGCAAA 238
consensus_4530#1      A--CAAACAATCTTCACAGTTAGTATATAATGATCAACAAAAGGGTATGCATGGAGCCAG 294
                      *       ***      *            * *     *         *    * *  * 

consensus_4530#0      TACAGATTTGTTATTACGTGGTGTACTAGCTCGTC-TGTGTACATTAATAGGTCAACAGG 477
consensus_4530#2      TAACACTTCAAGAAGAAATGG-ACAATAATGATTC-TATTCAAACCAGATCGAAATCTAG 296
consensus_4530#1      ACAAAGCTTACTGTTTGTCATAATCTTGTTGTTTCGTATACGAACTAAATTGGCTATTGA 354
                             *                  *      ** * *    *  *    *        

consensus_4530#0      CTAA-----AGTACTGATCGATGTACCAATTATTGGTAGTATGTACAAATTGTTATTANA 532
consensus_4530#2      CTAA-----AGTACTGATCGATGTACCAATTATTGTTAGTATGTACAAATTGTTATTAAA 351
consensus_4530#1      TTTCTTGTCAACTATACCAGACTTATCTGGAAAGCCTATACTACAAGAAATATTATCAAT 414
                       *       *    *    **  ** *    *    **   *  *  ** * **** *  

consensus_4530#0      CGAATTAGACCCAGAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGA------ 586
consensus_4530#2      CGAATTAGACAAGAAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGACAGTGA 411
consensus_4530#1      ATGGTGTAATTGTCAACCGTATTATTTTTCACGTTATGA-AATTCAAGTTAGTACCATGG 473
                          *   *     ***   *  *     **   * ***  **  * *  *  *      

consensus_4530#0      ------------------------------------------------------------
consensus_4530#2      ATTCGACGACAATGATGATGATGATGATG------------------------------- 440
consensus_4530#1      CATTGGCTAATTTGATACTGCACACAATCAATACAAAAGATGCACGTATTATGCAAATAA 533
                                                                                  

consensus_4530#0      --------------------------------------
consensus_4530#2      --------------------------------------
consensus_4530#1      CACTTCAAGAAGAAATGGACAATAATGATTCTATTCAA 571