cluster # 4533

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Schistosoma mansoni
cluster # 4533 cluster # 4533 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4533#0 length = 676 sequences # 2

consensus_4533#1 length = 395 sequences # 1

consensusID : consensus_4533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 676
fasta sequence

                              [CATTGCGTGATATAGGGATTGCTGGAGAATGATCTCTACGAAAATGTACTCTTTGTATGCCTAAATGTGGAACTGTACCACCTATACCGGGTTGTGCAGTCGATAAAGTCATATAACGTGTTTCCCAATCTTCACCAGTAGCTTGTTGAACCATACCATAATAAACTATTTTCATTGTTCCATCATTGTTAAAAATACGAATATCATAAGCTGGTTTCCATCCACAACGATTTACCACGTAAGAAACAAGCATTTCAACTTGACCTGTTTCTCTTGGTTCAACAAGTACACTTAATTCTCTGGCTAAGTGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAATTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTTCAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCATAAGGATTGGTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCATTTGCTGGTNGTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGATCTANCACACCTGTATGATTTGGTATATTATTCAGTGTCGTATGGCCATAATGACTACCCGCCATAGAATTTCATCC]

[+] EMBL CD131993             [CATTGCGTGATATAGGGATTGCTGGAGAATGATCTCTACGAAAATGTACTCTTTGTATGCCTAAATGTGGAACTGTACCACCTATACCGGGTTGTGCAGTCGATAAAGTCATATAACGTGTTTCCCAATCTTCACCAGTAGCTTGTTGAACCATACCATAATAAACTATTTTCATTGTTCCATCATTGTTAAAAATACGAATATCATAAGCTGGTTTCCATCCACAACGATTTACCACGTAAGAAACAAGCATTTCAACTTGACCTGTTTCTCTTGGTTCAACAAGTACACTTAATTCTCTGGCTAAGTGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAATTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTTCAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCATAAGGATTGGTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCATTTGCTGGTNGTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGATCTANCACACCTGTATGATTTGGTATATTATTCAGTGTCGTATGGCCATAATGACTACCCGCCATAGAATTTCATCC]
[-] EMBL CD181108             [                                                                                                                                                    AACCATACCATAATAAACTATTTTCATTGTTCCATCATTGTTAAAAATACGAATATCATAAGCTGGTTTCCATCCACAACGATTTACCACGTAAGAAACAAGCATTTCAACTTGACCTGTTTCTCTTGGTTCAACAAGTACACTTAATTCTCTGGCTAAGTGTTCATCTTGCTTTAGTTCTATATCACGAACTTCTTTTTCCAATGTCTCAATTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTTCAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCATAAGGATTGGTGACATCATTTATTCATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCATTTGCTGGTGTTGTTCCTCCCGATAATGTTGCTC                                                                                                       ]




>consensus_4533#0
CATTGCGTGATATAGGGATTGCTGGAGAATGATCTCTACGAAAATGTACTCTTTGTATGC
CTAAATGTGGAACTGTACCACCTATACCGGGTTGTGCAGTCGATAAAGTCATATAACGTG
TTTCCCAATCTTCACCAGTAGCTTGTTGAACCATACCATAATAAACTATTTTCATTGTTC
CATCATTGTTAAAAATACGAATATCATAAGCTGGTTTCCATCCACAACGATTTACCACGT
AAGAAACAAGCATTTCAACTTGACCTGTTTCTCTTGGTTCAACAAGTACACTTAATTCTC
TGGCTAAGTGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAA
TTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTT
CAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCAT
AAGGATTGGTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCAT
TTGCTGGTNGTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGAT
CTANCACACCTGTATGATTTGGTATATTATTCAGTGTCGTATGGCCATAATGACTACCCG
CCATAGAATTTCATCC

consensusID : consensus_4533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [CACTGTGGAAATCACCAAACTGCATCACGAGGCATGCTTTAGCTTGGAACCCTGGCTAAGTGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAATTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTTCAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCATAAGGATTGGTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCATTTGCTGGTGTTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGATCTACAACACCTGTATGATTTGGTATATTATTCAGTGTCGTATG]

[-] EMBL CD133096             [CACTGTGGAAATCACCAAACTGCATCACGAGGCATGCTTTAGCTTGGAACCCTGGCTAAGTGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAATTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTTCAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCATAAGGATTGGTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCATTTGCTGGTGTTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGATCTACAACACCTGTATGATTTGGTATATTATTCAGTGTCGTATG]




>consensus_4533#1
CACTGTGGAAATCACCAAACTGCATCACGAGGCATGCTTTAGCTTGGAACCCTGGCTAAG
TGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAATTCGTGTG
CGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTTCAGCTTCA
TCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCATAAGGATTG
GTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCATTTGCTGGT
GTTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGATCTACAACA
CCTGTATGATTTGGTATATTATTCAGTGTCGTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4533#0      CATTGCGTGATATAGGGATTGCTGGAGAATGATCTCTACGAAAATGTACTCTTTGTATGC 60
consensus_4533#1      ------------------------------------------------------------
                                                                                  

consensus_4533#0      CTAAATGTGGAACTGTACCACCTATACCGGGTTGTGCAGTCGATAAAGTCATATAACGTG 120
consensus_4533#1      ------------------------------------------------------------
                                                                                  

consensus_4533#0      TTTCCCAATCTTCACCAGTAGCTTGTTGAACCATACCATAATAAACTATTTTCATTGTTC 180
consensus_4533#1      ------------------------------------------------------------
                                                                                  

consensus_4533#0      CATCATTGTTAAAAATACGAATATCATAAGCTGGTTTCCATCCACAACGATTTACCACGT 240
consensus_4533#1      ------------------------------------------------------------
                                                                                  

consensus_4533#0      AAGAAACAAGCATTTCAACTTGACCTGTTTCTCTTGGTTCAACAAGTACACTTAATTCTC 300
consensus_4533#1      ---CACTGTGGAAATCACC--AAACTGCATCACGAGGC---ATGCTTTAGCTTGGAACCC 52
                          *    * *  *** *   * ***  ** *  **    *    *   ***    * *

consensus_4533#0      TGGCTAAGTGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAA 360
consensus_4533#1      TGGCTAAGTGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAA 112
                      ************************************************************

consensus_4533#0      TTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTT 420
consensus_4533#1      TTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTT 172
                      ************************************************************

consensus_4533#0      CAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCAT 480
consensus_4533#1      CAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCAT 232
                      ************************************************************

consensus_4533#0      AAGGATTGGTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCAT 540
consensus_4533#1      AAGGATTGGTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCAT 292
                      ************************************************************

consensus_4533#0      TTGCTGGTNGTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGAT 600
consensus_4533#1      TTGCTGGTGTTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGAT 352
                      ********  **************************************************

consensus_4533#0      CTANCACACCTGTATGATTTGGTATATTATTCAGTGTCGTATGGCCATAATGACTACCCG 660
consensus_4533#1      CTACAACACCTGTATGATTTGGTATATTATTCAGTGTCGTATG----------------- 395
                      ***  **************************************                 

consensus_4533#0      CCATAGAATTTCATCC 676
consensus_4533#1      ----------------