These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 676 fasta sequence [CATTGCGTGATATAGGGATTGCTGGAGAATGATCTCTACGAAAATGTACTCTTTGTATGCCTAAATGTGGAACTGTACCACCTATACCGGGTTGTGCAGTCGATAAAGTCATATAACGTGTTTCCCAATCTTCACCAGTAGCTTGTTGAACCATACCATAATAAACTATTTTCATTGTTCCATCATTGTTAAAAATACGAATATCATAAGCTGGTTTCCATCCACAACGATTTACCACGTAAGAAACAAGCATTTCAACTTGACCTGTTTCTCTTGGTTCAACAAGTACACTTAATTCTCTGGCTAAGTGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAATTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTTCAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCATAAGGATTGGTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCATTTGCTGGTNGTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGATCTANCACACCTGTATGATTTGGTATATTATTCAGTGTCGTATGGCCATAATGACTACCCGCCATAGAATTTCATCC] [+] EMBL CD131993 [CATTGCGTGATATAGGGATTGCTGGAGAATGATCTCTACGAAAATGTACTCTTTGTATGCCTAAATGTGGAACTGTACCACCTATACCGGGTTGTGCAGTCGATAAAGTCATATAACGTGTTTCCCAATCTTCACCAGTAGCTTGTTGAACCATACCATAATAAACTATTTTCATTGTTCCATCATTGTTAAAAATACGAATATCATAAGCTGGTTTCCATCCACAACGATTTACCACGTAAGAAACAAGCATTTCAACTTGACCTGTTTCTCTTGGTTCAACAAGTACACTTAATTCTCTGGCTAAGTGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAATTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTTCAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCATAAGGATTGGTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCATTTGCTGGTNGTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGATCTANCACACCTGTATGATTTGGTATATTATTCAGTGTCGTATGGCCATAATGACTACCCGCCATAGAATTTCATCC] [-] EMBL CD181108 [ AACCATACCATAATAAACTATTTTCATTGTTCCATCATTGTTAAAAATACGAATATCATAAGCTGGTTTCCATCCACAACGATTTACCACGTAAGAAACAAGCATTTCAACTTGACCTGTTTCTCTTGGTTCAACAAGTACACTTAATTCTCTGGCTAAGTGTTCATCTTGCTTTAGTTCTATATCACGAACTTCTTTTTCCAATGTCTCAATTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTTCAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCATAAGGATTGGTGACATCATTTATTCATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCATTTGCTGGTGTTGTTCCTCCCGATAATGTTGCTC ] consensusID : consensus_4533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [CACTGTGGAAATCACCAAACTGCATCACGAGGCATGCTTTAGCTTGGAACCCTGGCTAAGTGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAATTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTTCAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCATAAGGATTGGTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCATTTGCTGGTGTTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGATCTACAACACCTGTATGATTTGGTATATTATTCAGTGTCGTATG] [-] EMBL CD133096 [CACTGTGGAAATCACCAAACTGCATCACGAGGCATGCTTTAGCTTGGAACCCTGGCTAAGTGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAATTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTTCAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCATAAGGATTGGTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCATTTGCTGGTGTTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGATCTACAACACCTGTATGATTTGGTATATTATTCAGTGTCGTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4533#0 CATTGCGTGATATAGGGATTGCTGGAGAATGATCTCTACGAAAATGTACTCTTTGTATGC 60 consensus_4533#1 ------------------------------------------------------------ consensus_4533#0 CTAAATGTGGAACTGTACCACCTATACCGGGTTGTGCAGTCGATAAAGTCATATAACGTG 120 consensus_4533#1 ------------------------------------------------------------ consensus_4533#0 TTTCCCAATCTTCACCAGTAGCTTGTTGAACCATACCATAATAAACTATTTTCATTGTTC 180 consensus_4533#1 ------------------------------------------------------------ consensus_4533#0 CATCATTGTTAAAAATACGAATATCATAAGCTGGTTTCCATCCACAACGATTTACCACGT 240 consensus_4533#1 ------------------------------------------------------------ consensus_4533#0 AAGAAACAAGCATTTCAACTTGACCTGTTTCTCTTGGTTCAACAAGTACACTTAATTCTC 300 consensus_4533#1 ---CACTGTGGAAATCACC--AAACTGCATCACGAGGC---ATGCTTTAGCTTGGAACCC 52 * * * *** * * *** ** * ** * * *** * * consensus_4533#0 TGGCTAAGTGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAA 360 consensus_4533#1 TGGCTAAGTGTTCATCTTGCTTTAATTCTATATCACGAACTTCTTTTTCCAATGTCTCAA 112 ************************************************************ consensus_4533#0 TTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTT 420 consensus_4533#1 TTCGTGTGCGAACTTGTTCCAATTCTTCGGTTGTATCCATTAAAACTGTATCAAATCGTT 172 ************************************************************ consensus_4533#0 CAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCAT 480 consensus_4533#1 CAGCTTCATCTTTGTAAATTTCAAGAAATTTATGCAACGTTTCCACATTTTTTGGATCAT 232 ************************************************************ consensus_4533#0 AAGGATTGGTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCAT 540 consensus_4533#1 AAGGATTGGTGACATCATTTATACATTTATGTTCCGCAGTCGTTGCGGCCATTTGAGCAT 292 ************************************************************ consensus_4533#0 TTGCTGGTNGTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGAT 600 consensus_4533#1 TTGCTGGTGTTGTTCCTCCCGATAATGTTGCTCCTTGTGATGAGATATTATTTACTTGAT 352 ******** ************************************************** consensus_4533#0 CTANCACACCTGTATGATTTGGTATATTATTCAGTGTCGTATGGCCATAATGACTACCCG 660 consensus_4533#1 CTACAACACCTGTATGATTTGGTATATTATTCAGTGTCGTATG----------------- 395 *** ************************************** consensus_4533#0 CCATAGAATTTCATCC 676 consensus_4533#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||